BAC Information

Click to search

BAC

Clone NameB6Ng01-050A10
Chromosome14 (Build37)
Map Location 119,606,662 - 119,607,833
singlet/doubletsinglet
Overlap geneHs6st3
Upstream geneLOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2
Downstream geneLOC619601, EG621324, LOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050A10.bB6Ng01-050A10.g
ACCDH874097DH874098
length1,1341,241
definitionDH874097|Mus musculus domesticus DNA, BAC clone: B6Ng01-050A10, 5' end.DH874098|Mus musculus domesticus DNA, BAC clone: B6Ng01-050A10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctatgtctcgccactaaagtatgtagtgtcttcagcaatagag
tcatgccatctacttataatgggcaacagaaaacaacaacaacccaattg
cctgtgttgtttacagttgtgttgtcctctaagaccaacaactcatgggt
aagtaatcttaatatcactgggatttttaattaattatatgtcatctggg
agcagcactgttcatccatgagaaataactttgttcaaactcctgtttta
aatcatgctttatttagcctacaaatctttcttcaataacatttagtttc
tcattaagtttatacatactcttacctaaagaacactaaaaccttattag
agtctccacttccaagagaggctaaaactctatggtaaatatcttaggaa
cgatttgtctttactgggttcgtgcagtccactgtggtggaaagccccgg
gaagctggtcacactgcagctgcagtcaggggacagagatggaagctcct
gactatctcactctctctcttttctattcagtccaggaccccaaactgta
gaaacctgctgcccacagttaggtactcttctcactccaagtaatctaac
taaataccccccacaggcatgtcagaagctagtctcctggataattctag
atcttattaagtagaaaatcaatgttaccgatcatgacacttcagtagct
ctccttttctaatgtattatctctgttgtaatgtattttcatgagcccta
acctctagggttcctggttgctcagaaactctgtaccactacacactatc
tgcttttaaagaaactattcaagtcactgctgtgcccaattgacttgtca
gaattagctaagcaactgctagtgtctttgaagtcttctagttttctaaa
atctcctttaaatgtctccataagtacagattgacatcatgagtttaaat
cctggtccagctactccaatattcaaacttttgaagatagcatgatgtcc
atgtgaaattcatgctatgtgcataactgctacagcccaaatacacatgg
accaaaattgttaaatgactttagcatggtccacctgtggccaatacctg
ggggcaggtccatatcagaaattaatatgattca
gaattctttgtttagctctgtagcccattttttaatagggttattttgtt
ctctggagtctaacttcttgagttctctgtatatattggatattagccct
ctatcggatgcagggttggtaaagattttttcctaatctgttggttacca
ttttgtcctattgacagtgtcctttgctttacagaagctttacaatttta
tgaggtcccatttgtcaatacttagaacataagccattggtgttctgttc
aggaagttttcccctgtgtccatgtgttcaaggctcttctccactctctc
ttctattagttttagtgtatctggttttatgtggagttccttgattcact
tggacttgagctttgtacaaggagataagtatggattgatttgtattctt
ctacatgttgactgccagttgaagcagcaccatttgttgaaaatgctgtc
ttttttccactggatgctttttgctctttgtcaacgatcaagtgaccata
ggtgtgtggcttcatttctggctcttcaattctattccactgatctacct
gtctgtctgtgtaccaatatcatgaagtttttatcactactgctctgtaa
tacagcttgaggtcagggatggtgattcctccagacgttcttttattgtt
cagaatagttttcactatcctgggttttttgttattccagatgaatttgt
gaattgttctttctaattctatgaaaaattgagttggaattttgatagtg
attacactgaaactttgaagcaatcccactaaaatcagggactagacaag
gctgcccactctctccctacctagtcaatagagtatttgaagtcctaggc
agagcattagacaacaaaaggagatcaaaggatacaaattggaaagggag
aagtcaaatttcactatttgcaagatgatatgatagatatataagtgacc
ccaaaatttgaccaagaaaccccttaatcttgataaacaactcagccaag
tggcttggaataaaataaactcaaacaatccatagcctttttttaagaag
ggtacccggggttggaaaaaaaataagggacacacccccctcatagtccc
gattcttataaatgctctggtggtggctttacctattgagtaagagtcgt
gtggatagagatttcgtctctgaaaagagaatgatagagtgtcgaagaga
gaagattccccgctggtgatgtggggggattcatattgtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_119606662_119607833
seq2: B6Ng01-050A10.b_46_1179 (reverse)

seq1  TGAATCATAATATAAATATCTGATATGTGACTGTGACCCCCAAGGGTATT  50
      ||||||   |||| ||| |||||||||   |||   ||||||  ||||||
seq2  TGAATC---ATATTAATTTCTGATATGGACCTG---CCCCCA--GGTATT  42

seq1  GTGGCCCACAGGTTGAGAACCACTGCCCTAAAGTCAATTTTATACAATAT  100
         | ||||||||   | |||| ||  |||||||||  |||| |||  ||
seq2  ---GGCCACAGGT---GGACCA-TG--CTAAAGTCA--TTTA-ACA--AT  78

seq1  TTTGGTCCATGTGTATTTTGGCTGTATGCAGTTATGCACATAGCATGGAA  150
      |||||||||||||||||| ||||||| ||||||||||||||||||| |||
seq2  TTTGGTCCATGTGTATTTGGGCTGTA-GCAGTTATGCACATAGCAT-GAA  126

seq1  TTTTCCACATGGACATCATGGCTATCTTCAAAAAGTTTTGAATATTTGAG  200
      |||  |||||||||||||| |||||||||||||   |||||||||| |||
seq2  TTT--CACATGGACATCAT-GCTATCTTCAAAA--GTTTGAATATTGGAG  171

seq1  TAGCTTGGACCAGGATTTTAAACTCATGATTGTTCAATCTGTACCTTATG  250
      |||| |||||||||| ||||||||||||||   |||||||||| ||||||
seq2  TAGC-TGGACCAGGA-TTTAAACTCATGAT--GTCAATCTGTA-CTTATG  216

seq1  GAGACATTTTAAAGGAGATTTTTAGAAAACCTAGAAGACTTCAAAGACAC  300
      |||||| ||||||||||| |||||||||| ||||||||||||||||||||
seq2  GAGACA-TTTAAAGGAGA-TTTTAGAAAA-CTAGAAGACTTCAAAGACAC  263

seq1  TAGCAGTTGCTTAGCTAATTTCTGACAAGTCAATTGGGCACAGCAGTGAC  350
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAGCAGTTGCTTAGCTAA-TTCTGACAAGTCAATTGGGCACAGCAGTGAC  312

seq1  TTGAATAGTTTCTTTAAAAGCAGATAGTGTGTAGTGGTACAGAGTTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAGTTTCTTTAAAAGCAGATAGTGTGTAGTGGTACAGAGTTTCTG  362

seq1  AGCAACCAGGAACCCTAGAGGTTAGGGCTCATGAAAATACATTACAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCAGGAACCCTAGAGGTTAGGGCTCATGAAAATACATTACAACAG  412

seq1  AGATAATACATTAGAAAAGGAGAGCTACTGAAGTGTCATGATCGGTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATACATTAGAAAAGGAGAGCTACTGAAGTGTCATGATCGGTAACA  462

seq1  TTGATTTTCTACTTAATAAGATCTAGAATTATCCAGGAGACTAGCTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTCTACTTAATAAGATCTAGAATTATCCAGGAGACTAGCTTCTG  512

seq1  ACATGCCTGTGGGGGGTATTTAGTTAGATTACTTGGAGTGAGAAGAGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCTGTGGGGGGTATTTAGTTAGATTACTTGGAGTGAGAAGAGTAC  562

seq1  CTAACTGTGGGCAGCAGGTTTCTACAGTTTGGGGTCCTGGACTGAATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGTGGGCAGCAGGTTTCTACAGTTTGGGGTCCTGGACTGAATAGA  612

seq1  AAAGAGAGAGAGTGAGATAGTCAGGAGCTTCCATCTCTGTCCCCTGACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGAGAGTGAGATAGTCAGGAGCTTCCATCTCTGTCCCCTGACTG  662

seq1  CAGCTGCAGTGTGACCAGCTTCCCGGGGCTTTCCACCACAGTGGACTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCAGTGTGACCAGCTTCCCGGGGCTTTCCACCACAGTGGACTGCA  712

seq1  CGAACCCAGTAAAGACAAATCGTTCCTAAGATATTTACCATAGAGTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACCCAGTAAAGACAAATCGTTCCTAAGATATTTACCATAGAGTTTTA  762

seq1  GCCTCTCTTGGAAGTGGAGACTCTAATAAGGTTTTAGTGTTCTTTAGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTTGGAAGTGGAGACTCTAATAAGGTTTTAGTGTTCTTTAGGTA  812

seq1  AGAGTATGTATAAACTTAATGAGAAACTAAATGTTATTGAAGAAAGATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATGTATAAACTTAATGAGAAACTAAATGTTATTGAAGAAAGATTT  862

seq1  GTAGGCTAAATAAAGCATGATTTAAAACAGGAGTTTGAACAAAGTTATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTAAATAAAGCATGATTTAAAACAGGAGTTTGAACAAAGTTATTT  912

seq1  CTCATGGATGAACAGTGCTGCTCCCAGATGACATATAATTAATTAAAAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGATGAACAGTGCTGCTCCCAGATGACATATAATTAATTAAAAAT  962

seq1  CCCAGTGATATTAAGATTACTTACCCATGAGTTGTTGGTCTTAGAGGACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGATATTAAGATTACTTACCCATGAGTTGTTGGTCTTAGAGGACA  1012

seq1  ACACAACTGTAAACAACACAGGCAATTGGGTTGTTGTTGTTTTCTGTTGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACTGTAAACAACACAGGCAATTGGGTTGTTGTTGTTTTCTGTTGC  1062

seq1  CCATTATAAGTAGATGGCATGACTCTATTGCTGAAGACACTACATACTTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATAAGTAGATGGCATGACTCTATTGCTGAAGACACTACATACTTT  1112

seq1  AGTGGCGAGACATAGAGAATTC  1172
      ||||||||||||||||||||||
seq2  AGTGGCGAGACATAGAGAATTC  1134