BAC Information

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BAC

Clone NameB6Ng01-050J09
Chromosome14 (Build37)
Map Location 68,237,232 - 68,378,985
singlet/doubletdoublet
Overlap geneCdca2, Kctd9, Gnrh1, Dock5
Upstream geneAdra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416, LOC100043046, LOC100043056
Downstream geneNefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050J09.bB6Ng01-050J09.g
ACCDH874486DH874487
length1,0061,025
definitionDH874486|Mus musculus domesticus DNA, BAC clone: B6Ng01-050J09, 5' end.DH874487|Mus musculus domesticus DNA, BAC clone: B6Ng01-050J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,237,232 - 68,238,239)(68,377,948 - 68,378,985)
sequence
gaattctgtcttctctcctgagaagttccctctcttgtcttttcaatatg
ctcttggccccgaagtatcttcttttgtttggcttgttatataaggttat
gtaaatacgaactgatactacttgattcaattcaaaagacatccccagag
aagtccactcctcagttctgacttctttggacctcccagttgtatcttct
gaagtctcccactgcagtattcagggtctttgtctttcttcctcctggtt
ctgccaggactgcttcctaggccagacaggctctgcgctggcctggaccc
ctctgtagagcctcgggccacaggcgtgaacagtcatcagctgatcctgg
gtgaagtggttttggaatcctgtacagccctgctccaactctcagctagg
cagagacgagaggaggtgtttggggatttctaagtcctcaaagagacttc
ccgggctacatatccatcagccacaaggatttcctctcaagggtcagccc
aaggacctctgaacttaccaatggttatcatctagctctgcccgtgccct
gcactcaactagggattgagggtactcaagcagggagccaagcagatggc
cctggacctgaggttctgggcttctagccagggtgggtgaccttcatcgt
gactttctgtcatcttccagccccacccttctttctcctcttctttctgg
tctccttgttcccccgagttctctttccccttctctccctcatgccaggc
aagtttgcaacaggctgctctttgcacagtgaactcaagggcactcttgg
ctcttctggtagcattatggctacgacagaagtcccgtttcctggtctct
cttctttgctccatatctcctcaccaatcgtttgaacttttaaacagtgt
caactgctgagtcctggagagcaccagctttcccaggctatggtgttgag
tggatatggcagtttcttctcccattgtgtggaaagccacgtgagcaccg
ctgttc
gaattccatcctgatccacaggaagaaagagggagaccagaggcagactg
ggctgggtgtgggcttttaaagccttcaagcccactcccagtgccactcc
ttgatgaataagccatttttatgcaaaccaccacaactgatagaatgata
cgctgactaacagcaacaacaaagcagagacctccaaagaggaacttgga
gtcttaaggaactcagtgtgacctcaagcagacctccctagagtttgtcc
tgcctgcagtcctctaagccagtgacaatacttaattctggactggctga
aagagagatctagcgttttttaaaatcttaaagtgatctactcagtgtac
tatctaatacagggagtaactcttaattgcatcctaattcagtcaagcca
cccatttaaaaaattgtaagaaaattgggaagttaatttgaagattgttg
catgagattagggcatgatggggttgtggttatgaccgcgtcttgtagaa
atgccctctggaactatggtaggtatggcaccaggcagcccctcccaagt
catgtagggaagggtgagggctgtaactgggtatgtagactaaacaagac
ctgctctaagacggtcatttttgatgatgtgggacctgaacatgcgctta
ttatattatccattttttttttttgcattgaaactcaacaaaaactttgc
ccaatccagttccaaacccttggacttgagtgatcctcctgcctcagctt
actaagttcctgggatataagacataagacatcatcctcagctgcagtta
ttttcatttatgtaataataagtgaaaccaaattttatactttttggatt
tctttttttcattaattatccatttatatctaagtttttaaaatgaggct
actctttctatttgactgcaaaatgtctgtcttacctatatatgcttgtt
actatccaactctctctctacgtgtagtgtttgatcaggttctgatggat
tattttcattatgggacttggaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_68237232_68238239
seq2: B6Ng01-050J09.b_47_1052

seq1  GAATTCTGTCTTCTCTCCTGAGAAGTTCCCTCTCTTGTCTTTTCAATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTTCTCTCCTGAGAAGTTCCCTCTCTTGTCTTTTCAATATG  50

seq1  CTCTTGGCCCCGAAGTATCTTCTTTTGTTTGGCTTGTTATATAAGGTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGCCCCGAAGTATCTTCTTTTGTTTGGCTTGTTATATAAGGTTAT  100

seq1  GTAAATACGAACTGATACTACTTGATTCAATTCAAAAGACATCCCCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATACGAACTGATACTACTTGATTCAATTCAAAAGACATCCCCAGAG  150

seq1  AAGTCCACTCCTCAGTTCTGACTTCTTTGGACCTCCCAGTTGTATCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCACTCCTCAGTTCTGACTTCTTTGGACCTCCCAGTTGTATCTTCT  200

seq1  GAAGTCTCCCACTGCAGTATTCAGGGTCTTTGTCTTTCTTCCTCCTGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTCCCACTGCAGTATTCAGGGTCTTTGTCTTTCTTCCTCCTGGTT  250

seq1  CTGCCAGGACTGCTTCCTAGGCCAGACAGGCTCTGCGCTGGCCTGGACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGGACTGCTTCCTAGGCCAGACAGGCTCTGCGCTGGCCTGGACCC  300

seq1  CTCTGTAGAGCCTCGGGCCACAGGCGTGAACAGTCATCAGCTGATCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGAGCCTCGGGCCACAGGCGTGAACAGTCATCAGCTGATCCTGG  350

seq1  GTGAAGTGGTTTTGGAATCCTGTACAGCCCTGCTCCAACTCTCAGCTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTGGTTTTGGAATCCTGTACAGCCCTGCTCCAACTCTCAGCTAGG  400

seq1  CAGAGACGAGAGGAGGTGTTTGGGGATTTCTAAGTCCTCAAAGAGACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACGAGAGGAGGTGTTTGGGGATTTCTAAGTCCTCAAAGAGACTTC  450

seq1  CCGGGCTACATATCCATCAGCCACAAGGATTTCCTCTCAAGGGTCAGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCTACATATCCATCAGCCACAAGGATTTCCTCTCAAGGGTCAGCCC  500

seq1  AAGGACCTCTGAACTTACCAATGGTTATCATCTAGCTCTGCCCGTGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCTCTGAACTTACCAATGGTTATCATCTAGCTCTGCCCGTGCCCT  550

seq1  GCACTCAACTAGGGATTGAGGGTACTCAAGCAGGGAGCCAAGCAGATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCAACTAGGGATTGAGGGTACTCAAGCAGGGAGCCAAGCAGATGGC  600

seq1  CCTGGACCTGAGGTTCTGGGCTTCTAGCCAGGGTGGGTGACCTTCATCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACCTGAGGTTCTGGGCTTCTAGCCAGGGTGGGTGACCTTCATCGT  650

seq1  GACTTTCTGTCATCTTCCAGCCCCACCCTTCTTTCTCCTCTTCTTTCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCTGTCATCTTCCAGCCCCACCCTTCTTTCTCCTCTTCTTTCTGG  700

seq1  TCTCCTTGTTCCCCCGAGTTCTCTTTCCCCTTCTCTCCCTCATGCCAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGTTCCCCCGAGTTCTCTTTCCCCTTCTCTCCCTCATGCCAGGC  750

seq1  AAGTTTGCAACAGGCTGCTCTTTGCACAGTGAACTCAAAGGGCACTCTTG  800
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGTTTGCAACAGGCTGCTCTTTGCACAGTGAACTC-AAGGGCACTCTTG  799

seq1  GCTCTTCTGGTAGCATTATGGCTACGACAGAAGTCCCGTTTCCTGGTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCTGGTAGCATTATGGCTACGACAGAAGTCCCGTTTCCTGGTCTC  849

seq1  TCTTCTTTGCTCCATATCTCCTCACCAATCGTTTGAACTTTTAAACAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTGCTCCATATCTCCTCACCAATCGTTTGAACTTTTAAACAGTG  899

seq1  TCAACTGCTGAGTCCTGGAGAGCACCAGCTTTCCCAGGCTATGGTGTTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGCTGAGTCCTGGAGAGCACCAGCTTTCCCAGGCTATGGTGTTGA  949

seq1  GTGGATATGGCAGGTTTCTTCTCCCATTGTGTGGAAAGCCACGTGAGCAC  1000
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTGGATATGGCA-GTTTCTTCTCCCATTGTGTGGAAAGCCACGTGAGCAC  998

seq1  CGCTGTTC  1008
      ||||||||
seq2  CGCTGTTC  1006

seq1: chr14_68377948_68378985
seq2: B6Ng01-050J09.g_68_1092 (reverse)

seq1  ATTTCCAAGTCCCATAATGAAAACTAATCCATCAGGAATCATGATCAAAC  50
      ||||||||||||||||||||||| |||||||||||  | | |||||||||
seq2  ATTTCCAAGTCCCATAATGAAAA-TAATCCATCAG--AACCTGATCAAAC  47

seq1  ACTACACGTAGAGGAGAGAGTTGGATATGTAACAAGCATATTATAGGTAA  100
      |||||||||||| |||||||||||||| |||||||||||| |||||||||
seq2  ACTACACGTAGA-GAGAGAGTTGGATA-GTAACAAGCATA-TATAGGTAA  94

seq1  GGACAGACATTTTTGGCAGTCAAAATAGAAAGAGTAGCCTCATTTTTAAA  150
       ||||||||||||  |||||| ||||||||||||||||||||||||  ||
seq2  -GACAGACATTTT--GCAGTC-AAATAGAAAGAGTAGCCTCATTTT--AA  138

seq1  AAACTTAAGATATAAATGGATAATTAATGAAAAAAAGAAAATCCAAAAAG  200
      |||||| |||||||||||||||||||||||||||||| ||||||||||||
seq2  AAACTT-AGATATAAATGGATAATTAATGAAAAAAAG-AAATCCAAAAAG  186

seq1  TATAAAATTTGGTTTCACTTATTATTACATAAATGAAAATAACTGCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATTTGGTTTCACTTATTATTACATAAATGAAAATAACTGCAGCT  236

seq1  GAGGATGATGTCTTATGTCTTATATCCCAGGAACTTAGTAAGCTGAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGATGTCTTATGTCTTATATCCCAGGAACTTAGTAAGCTGAGGCA  286

seq1  GGAGGATCACTCAAGTCCAAGGGTTTGGAACTGGATTGGGCAAAGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATCACTCAAGTCCAAGGGTTTGGAACTGGATTGGGCAAAGTTTTT  336

seq1  GTTGAGTTTCAATGC-AAAAAAAAAAATGGATAATATAATAAGCGCATGT  399
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTTGAGTTTCAATGCAAAAAAAAAAAATGGATAATATAATAAGCGCATGT  386

seq1  TCAGGTCCCACATCATCAAAAATGACCGTCTTAGAGCAGGTCTTGTTTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCCCACATCATCAAAAATGACCGTCTTAGAGCAGGTCTTGTTTAG  436

seq1  TCTACATACCCAGTTACAGCCCTCACCCTTCCCTACATGACTTGGGAGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATACCCAGTTACAGCCCTCACCCTTCCCTACATGACTTGGGAGGG  486

seq1  GCTGCCTGGTGCCATACCTACCATAGTTCCAGAGGGCATTTCTACAAGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTGGTGCCATACCTACCATAGTTCCAGAGGGCATTTCTACAAGAC  536

seq1  GCGGTCATAACCACAACCCCATCATGCCCTAATCTCATGCAACAATCTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTCATAACCACAACCCCATCATGCCCTAATCTCATGCAACAATCTTC  586

seq1  AAATTAACTTCCCAATTTTCTTACAATTTTTTAAATGGGTGGCTTGACTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACTTCCCAATTTTCTTACAATTTTTTAAATGGGTGGCTTGACTG  636

seq1  AATTAGGATGCAATTAAGAGTTACTCCCTGTATTAGATAGTACACTGAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGATGCAATTAAGAGTTACTCCCTGTATTAGATAGTACACTGAGT  686

seq1  AGATCACTTTAAGATTTTAAAAAACGCTAGATCTCTCTTTCAGCCAGTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACTTTAAGATTTTAAAAAACGCTAGATCTCTCTTTCAGCCAGTCC  736

seq1  AGAATTAAGTATTGTCACTGGCTTAGAGGACTGCAGGCAGGACAAACTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAAGTATTGTCACTGGCTTAGAGGACTGCAGGCAGGACAAACTCT  786

seq1  AGGGAGGTCTGCTTGAGGTCACACTGAGTTCCTTAAGACTCCAAGTTCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGTCTGCTTGAGGTCACACTGAGTTCCTTAAGACTCCAAGTTCCT  836

seq1  CTTTGGAGGTCTCTGCTTTGTTGTTGCTGTTAGTCAGCGTATCATTCTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAGGTCTCTGCTTTGTTGTTGCTGTTAGTCAGCGTATCATTCTAT  886

seq1  CAGTTGTGGTGGTTTGCATAAAAATGGCTTATTCATCAAGGAGTGGCACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTGGTGGTTTGCATAAAAATGGCTTATTCATCAAGGAGTGGCACT  936

seq1  GGGAGTGGGCTTGAAGGCTTTAAAAGCCCACACCCAGCCCAGTCTGCCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGGGCTTGAAGGCTTTAAAAGCCCACACCCAGCCCAGTCTGCCTC  986

seq1  TGGTCTCCCTCTTTCTTCCTGTGGATCAGGATGGAATTC  1038
      |||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCCCTCTTTCTTCCTGTGGATCAGGATGGAATTC  1025