BAC Information

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BAC

Clone NameB6Ng01-050K02
Chromosome14 (Build37)
Map Location 19,188,575 - 19,319,966
singlet/doubletdoublet
Overlap genenone
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1
Downstream geneLOC627717, LOC238963, Ube2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050K02.bB6Ng01-050K02.g
ACCDH874517DH874518
length1,1781,020
definitionDH874517|Mus musculus domesticus DNA, BAC clone: B6Ng01-050K02, 5' end.DH874518|Mus musculus domesticus DNA, BAC clone: B6Ng01-050K02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,318,780 - 19,319,966)(19,188,575 - 19,189,600)
sequence
gaattcctgtgcagcccaggctggcctccaactcatcgtgggtgaaatct
gctaattaagatggaagtccaccataatcacatagcctctgagctaggca
ctatagcacctccaattcttcaaatgctttccaaagctaatgaggcatct
gaatgccctaagccctcagtctcaatgacctttgcccaccctggatgttc
ctgccctcagtccccaaaactttataagccttgagttaccctaaataaaa
ttgatctgtctcctgatagctggctttgatgtggttattcatcagatata
ttcacaggacttctgaaccccttccacccacacacactctcccaccccaa
ccctctacccccacactcccactgcccttgtggactaacaatccaggaga
acagggagacccacaactcatggctgtgctcttgcctcagcttcccaagg
gctggaattacaggcaggaaaccagcatgcctggacttattcttggcttt
gtttgtttgtttgtctgtctatctgtctgtctgttgtccctgattttcca
atcaggttttgatttctgcacccaggctggtctcagaatccctctgtatc
agctttccaaactcatctcactcagctcattgcacagatacaaggtgttt
ctgactgatttttatgtccagggctgaaagggaagcctaattaattaggt
tcatatttctttgaattgtctcagaaaacaactaatacttgtaccagctg
ggtggattatcttttctttttccgtgtgtggaaaagaagccccagcattt
catagggagcattcatgaggcaacagtgaagagagagacatttgttctgt
ggtggcgtggtactggctctcactcgtcacacagcaactcctgattctgt
agctctatttttactacagagcactaactccaagaactttctctagagtt
ccacaattggtggggcagcagtttaggaattagcatccagaacttcactg
tcctagctgtttatttatagactcaaggaattagagaaagtaaagaaaag
actcttaatccagcatccttctaccctcattactgttatgctctttcggc
agacaatgtagtctagtcaggcaaacgcaggctagctgtgacacagcctg
agcttcaagttcaagtctagctgacttg
gaattctctgggaacttgcttttcaagatccccatggctggccactgctg
gggaaatgaaggtgctacttcagtggcctccttagaaagggcaaatgact
ctgaagtgccaccttgacattaggtaaagcaacctaaaaatagtcctagt
attcaggatctggattctttgagtgagagccatcatccctcccttgggtg
acgttttatggagaagattctttctgtcacatgagggtagaggctgtgct
gtgcttatacattcaagatgcagattctaattcacacactaaggaacaga
acgtctatctctgcatgaatctctcctcccagaaaggagtcacatgcttg
tcttgagagatttgccatctcacgctcgggtcccagagggagaaaagata
atgatgtcatgtagcctggctgctcactctttatgctcctcaagctcagg
ttctctttttaaaggacatcacaagattctctgtgacacgattccactct
ggcatccactacaaagacatttatgtgcccttccagggcttggagccaga
cctccagactgcacaagctttctgtccatctgtcacatggaagacagagc
tgcagcttcagctaggcctcgagctgagaagataggtcaggagtgaagat
ggccactagtgctgtcccaagcctccatagctgctaggtaagggcttagg
cctgctcatgccccaccctggccatttgtggtcagtatagtgagaggaga
gaggccagcatggtcagtttgctttaatagacaaaagggatagtgtggct
ttcttttctgggttagtaaggaagagggaagtgactttctgggccagcag
gaggtgcctttgtcttacatctgagaaggcccttctttctctactaccac
ttggagacctctgtccgccaccaggtcaggatcctcaggaggccaagtca
gtgaggtatctttctagtttcaagattggctgtggtgggaaactcttatt
tatccttaattgcttccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_19318780_19319966
seq2: B6Ng01-050K02.b_43_1220 (reverse)

seq1  CAAGTCAGGCCTCAGACTTGGAACACTGGAAAGCCACCAGGCCTGCTGT-  49
      ||||||||  || |||||||    ||| | ||||   |||    ||||| 
seq2  CAAGTCAG--CT-AGACTTG---AACTTG-AAGC--TCAG----GCTGTG  37

seq1  TCACAGCTTAGCCTGCTGTTTGCCTGACTGGGCTGCCTTTGTCTTGCCGA  99
      ||||||| |||||||| |||||||||||| | ||  | ||||| ||||||
seq2  TCACAGC-TAGCCTGC-GTTTGCCTGACTAGACT-ACATTGTC-TGCCGA  83

seq1  AGAGGCCTTAACAGGTAATGAGGGGTGGGAGGGATGCTGGTATAAGAGTC  149
      | ||  | ||||| ||||||||||    || |||||||||  ||||||||
seq2  A-AGAGCATAACA-GTAATGAGGG--TAGAAGGATGCTGGATTAAGAGTC  129

seq1  TTTTCTTTTACTTTTCTCTATTTTCCCCTGAGTCTATAAATAAACAGCTA  199
      ||||| ||||| |||||||| ||  || ||||||||||||||||||||||
seq2  TTTTC-TTTAC-TTTCTCTAATT--CCTTGAGTCTATAAATAAACAGCTA  175

seq1  GG-CAGTGGAAGGTCTGGATGCTAATTCCTAAACTGCTG-CCCACCAATT  247
      || |||| |||| |||||||||||||||||||||||||| ||||||||||
seq2  GGACAGT-GAAGTTCTGGATGCTAATTCCTAAACTGCTGCCCCACCAATT  224

seq1  GT-GTACTCTTGAG-AAGTTCTTTGAGTATGTGCTCTGTAGTAAAAATAA  295
      || | ||||| ||| |||||||| ||||  ||||||||||||||||||| 
seq2  GTGGAACTCTAGAGAAAGTTCTTGGAGTTAGTGCTCTGTAGTAAAAATAG  274

seq1  GGCTACAGATTCA-GAGTTGCTGTGGTGACGAGTGAGAGGCCAGTA-CAC  343
       |||||||| ||| |||||||||| ||||||||||||| ||||||| |||
seq2  AGCTACAGAATCAGGAGTTGCTGT-GTGACGAGTGAGA-GCCAGTACCAC  322

seq1  CGCACCACAGAACAAATGTCTCTCTCTTCACTG-TGCCTCATG-ATGCT-  390
        ||||||||||||||||||||||||||||||| ||||||||| ||||| 
seq2  GCCACCACAGAACAAATGTCTCTCTCTTCACTGTTGCCTCATGAATGCTC  372

seq1  CCTATG-AATGCTTGGGCTTCTTTTCCACACACGGAAAA--GAAAGAT-A  436
      |||||| |||||| |||||||||||||||||||||||||   |||||| |
seq2  CCTATGAAATGCTGGGGCTTCTTTTCCACACACGGAAAAAGAAAAGATAA  422

seq1  TCCA-CCAGCT-GTAC-AGTATTAGTTGTTTTCTGAGACAATTCAAAGAA  483
      |||| |||||| |||| |||||||||||||||||||||||||||||||||
seq2  TCCACCCAGCTGGTACAAGTATTAGTTGTTTTCTGAGACAATTCAAAGAA  472

seq1  ATATGAACCTAATTAATTAGGCTTCCC-TTCAG-CCTGGACATAAAATTC  531
      ||||||||||||||||||||||||||| ||||| ||||||||||||| ||
seq2  ATATGAACCTAATTAATTAGGCTTCCCTTTCAGCCCTGGACATAAAAATC  522

seq1  AGTCAGAAACACCTTGTATCTGTGCAATGAGCTGAGTGAGATGAGTTTGG  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAAACACCTTGTATCTGTGCAATGAGCTGAGTGAGATGAGTTTGG  572

seq1  AAAGCTGATACAGAGGGATTCTGAGACCAGCCTGGGTGCAGAAATCAAAA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGATACAGAGGGATTCTGAGACCAGCCTGGGTGCAGAAATCAAAA  622

seq1  CCTGATTGGAAAATCAGGGACAACAGACAGACAGATAGACAGACAAACAA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTGGAAAATCAGGGACAACAGACAGACAGATAGACAGACAAACAA  672

seq1  ACAAACAAAGCCAAGAATAAGTCCAGGCATGCTGGTTTCCTGCCTGTAAT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAGCCAAGAATAAGTCCAGGCATGCTGGTTTCCTGCCTGTAAT  722

seq1  TCCAGCCCTTGGGAAGCTGAGGCAAGAGCACAGCCATGAGTTGTGGGTCT  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCCTTGGGAAGCTGAGGCAAGAGCACAGCCATGAGTTGTGGGTCT  772

seq1  CCCTGTTCTCCTGGATTGTTAGTCCACAAGGGCAGTGGGAGTGTGGGGGT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTCTCCTGGATTGTTAGTCCACAAGGGCAGTGGGAGTGTGGGGGT  822

seq1  AGAGGGTTGGGGTGGGAGAGTGTGTGTGGGTGGAAGGGGTTCAGAAGTCC  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTTGGGGTGGGAGAGTGTGTGTGGGTGGAAGGGGTTCAGAAGTCC  872

seq1  TGTGAATATATCTGATGAATAACCACATCAAAGCCAGCTATCAGGAGACA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATATATCTGATGAATAACCACATCAAAGCCAGCTATCAGGAGACA  922

seq1  GATCAATTTTATTTAGGGTAACTCAAGGCTTATAAAGTTTTGGGGACTGA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATTTTATTTAGGGTAACTCAAGGCTTATAAAGTTTTGGGGACTGA  972

seq1  GGGCAGGAACATCCAGGGTGGGCAAAGGTCATTGAGACTGAGGGCTTAGG  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGAACATCCAGGGTGGGCAAAGGTCATTGAGACTGAGGGCTTAGG  1022

seq1  GCATTCAGATGCCTCATTAGCTTTGGAAAGCATTTGAAGAATTGGAGGTG  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAGATGCCTCATTAGCTTTGGAAAGCATTTGAAGAATTGGAGGTG  1072

seq1  CTATAGTGCCTAGCTCAGAGGCTATGTGATTATGGTGGACTTCCATCTTA  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTGCCTAGCTCAGAGGCTATGTGATTATGGTGGACTTCCATCTTA  1122

seq1  ATTAGCAGATTTCACCCACGATGAGTTGGAGGCCAGCCTGGGCTGCACAG  1181
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAGATTTCACCCACGATGAGTTGGAGGCCAGCCTGGGCTGCACAG  1172

seq1  GAATTC  1187
      ||||||
seq2  GAATTC  1178

seq1: chr14_19188575_19189600
seq2: B6Ng01-050K02.g_68_1087

seq1  GAATTCTCTGGGAACTTGCTTTTCAAGATCCCCATGGCTGGCCACTGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGGAACTTGCTTTTCAAGATCCCCATGGCTGGCCACTGCTG  50

seq1  GGGAAATGAAGGTGCTACTTCAGTGGCCTCCTTAGAAAGGGCAAATGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATGAAGGTGCTACTTCAGTGGCCTCCTTAGAAAGGGCAAATGACT  100

seq1  CTGAAGTGCCACCTTGACATTAGGTAAAGCAACCTAAAAATAGTCCTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTGCCACCTTGACATTAGGTAAAGCAACCTAAAAATAGTCCTAGT  150

seq1  ATTCAGGATCTGGATTCTTTGAGTGAGAGCCATCATCCCTCCCTTGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGATCTGGATTCTTTGAGTGAGAGCCATCATCCCTCCCTTGGGTG  200

seq1  ACGTTTTATGGAGAAGATTCTTTCTGTCACATGAGGGTAGAGGCTGTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTTATGGAGAAGATTCTTTCTGTCACATGAGGGTAGAGGCTGTGCT  250

seq1  GTGCTTATACATTCAAGATGCAGATTCTAATTCACACACTAAGGAACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTATACATTCAAGATGCAGATTCTAATTCACACACTAAGGAACAGA  300

seq1  ACGTCTATCTCTGCATGAATCTCTCCTCCCAGAAAGGAGTCACATGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTATCTCTGCATGAATCTCTCCTCCCAGAAAGGAGTCACATGCTTG  350

seq1  TCTTGAGAGATTTGCCATCTCACGCTCGGGTCCCAGAGGGAGAAAAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGAGATTTGCCATCTCACGCTCGGGTCCCAGAGGGAGAAAAGATA  400

seq1  ATGATGTCATGTAGCCTGGCTGCTCACTCTTTATGCTCCTCAAGCTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTCATGTAGCCTGGCTGCTCACTCTTTATGCTCCTCAAGCTCAGG  450

seq1  TTCTCTTTTTAAAGGACATCACAAGATTCTCTGTGACACGATTCCACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTTTAAAGGACATCACAAGATTCTCTGTGACACGATTCCACTCT  500

seq1  GGCATCCACTACAAAGACATTTATGTGCCCTTCCAGGGCTTGGAGCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCACTACAAAGACATTTATGTGCCCTTCCAGGGCTTGGAGCCAGA  550

seq1  CCTCCAGACTGCACAAGCTTTCTGTCCATCTGTCACATGGAAGACAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGACTGCACAAGCTTTCTGTCCATCTGTCACATGGAAGACAGAGC  600

seq1  TGCAGCTTCAGCTAGGCCTCGAGCTGAGAAGATAGGTCAGGAGTGAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTTCAGCTAGGCCTCGAGCTGAGAAGATAGGTCAGGAGTGAAGAT  650

seq1  GGCCACTAGTGCTGTCCCAAGCCTCCATAGCTGCTAGGTAAGGGCTTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTAGTGCTGTCCCAAGCCTCCATAGCTGCTAGGTAAGGGCTTAGG  700

seq1  CCTGCTCATGCCCCACCCTGGCCATTTGTGGTCAGTATAGTGAGAGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCATGCCCCACCCTGGCCATTTGTGGTCAGTATAGTGAGAGGAGA  750

seq1  GAGGCCAGCATGGTCAGTTTGCTTTAATAGAC-AAAGGGATAGTGTG--C  797
      |||||||||||||||||||||||||||||||| ||||||||||||||   
seq2  GAGGCCAGCATGGTCAGTTTGCTTTAATAGACAAAAGGGATAGTGTGGCT  800

seq1  TTCCTTTCTGGG-TAGTCAGGAAGGAGGAGGTGACCTTCTGGGCCAAGCA  846
      ||| |||||||| |||| ||||||  ||| ||||| ||||||||| ||||
seq2  TTCTTTTCTGGGTTAGTAAGGAAGAGGGAAGTGACTTTCTGGGCC-AGCA  849

seq1  GGAGGTGCCTTTGTCCTAGCACCTGAGAAGGCCCCTTCTTCTCTACTACC  896
      ||||||||||||||| || || |||||||||||| |  ||||||||||||
seq2  GGAGGTGCCTTTGTCTTA-CATCTGAGAAGGCCCTTCTTTCTCTACTACC  898

seq1  ACTTGGAGA-CTCTGTCAGCCCACAGTTCAGGATCCTCACAGAGGCCAAG  945
      ||||||||| ||||||| |||  ||| ||||||||||||  |||||||||
seq2  ACTTGGAGACCTCTGTCCGCCACCAGGTCAGGATCCTCA-GGAGGCCAAG  947

seq1  TCAGTGAGGTAATCTATCCTAGTCTCAAGATTGGCTGTGGTGGGAGACTC  995
      |||||||||| |||| | ||||| ||||||||||||||||||||| ||| 
seq2  TCAGTGAGGT-ATCT-TTCTAGTTTCAAGATTGGCTGTGGTGGGAAACT-  994

seq1  CTTAATTTTATCCTCTATATTTGCTTCCTTC  1026
      ||||  ||||||||   || |||||||||||
seq2  CTTA--TTTATCCT---TAATTGCTTCCTTC  1020