BAC Information

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BAC

Clone NameB6Ng01-052E17
Chromosome14 (Build37)
Map Location 43,593,316 - 43,703,034
singlet/doubletdoublet
Overlap geneLOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130
Upstream gene1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114
Downstream geneLOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052E17.bB6Ng01-052E17.g
ACCDH875689DH875690
length1,0551,094
definitionDH875689|Mus musculus domesticus DNA, BAC clone: B6Ng01-052E17, 5' end.DH875690|Mus musculus domesticus DNA, BAC clone: B6Ng01-052E17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,701,973 - 43,703,034)(43,593,316 - 43,594,424)
sequence
gaattcaattttcaactgcttgttaagctcatataactttcagggatata
ggtattgcagttgttgcgaactgcagtgatggtgttttactgttattcag
tttataagagggggaggcaaccatgattttgtggaatctgatagtgtttc
ttccatttctgactcatacaaacatttgctgttcttgaaagatctgtggc
aaaatatgattgtgtatctgttttgttttgggcacttattgcttggaaga
cattatcatggcttatcattctgtgtgtatttgaggtttctgagtattga
atggtatgggaaggacttgaactgctgtaacacaaagggacattgcaaag
aatctccataaatactacccaaattagtacttgccagcatgcctctcttc
aaggagcattaggtagtccaaaaatagactcaaaaatagaacggaagaag
gctggggatattgtgaattctttttatagtgaggaattgttctgtaatct
tatgagtcccattaccttttacagagaagaaaggggacagaagtaattga
agctcatgggtatttaaaatctatactcaattaggttagggaggggagct
gggaaactgatgagataacaatcaataaagctagggtcaggaggccattc
aggtgtgaatttatatttctgagtgacttttctactctttttttataatt
tatttttattcattttctaatcagaaatacaaatagggagaaaaccaaca
aagaatgtttcatgacacatgaagcaaaaataaaagcaactatatgaaac
accaggaaaaatacatatacctcctatcaaagacaaaaacactgatccct
ttaagatagaaggaacacagaagtcaaggaaattctggcatcccagtgca
aaatcaaggttgagaaggagggatgacccaaatctgctgaaagagaagta
tgcccctagcacactgtcacactcctgagaaagaattgctttggtcaatt
ctcttagctaccaaatgacatgaatcttcttctccacaaacatatttcag
ggggc
gaattctttcaaaccttcaaagaagacctaatacctattcccttcaaacc
attccacaaaatagaaacaaaaggaatgatacccaatgtgctctatggag
ccacagttacactgataccaaagccacacaaagacccaacgaggaaagaa
cttctgaatttcacttatggataccagtgcaaaattatgcaattcacttc
tcatgatgagtttgttacatgagaccatgcaaggtaactaatgtctctgt
gactgttttccttatttgaaagtgagtaatgagatcgatcatctgaggag
taaccactcctgactaacatgaatgataggactgtacagagcatgggctt
aacgttctaggtacagtgcaaataactggggcagttaacaacaaaaacca
aaggaaataatagaaatactaacaacatttttaaaaaatatcttctgagt
gctgggattaaaggcatgcctctggctagttttatatgtatttataataa
aaaacaacaaaataccctattacaggtctagcagttgccgtagagggagc
tgtgtgattctgtgtgctgcttcctttccccagatacctcaagttatcag
tcctgtaccaggtgagctggacctaagagcagcctagttgaccttcctgc
tgcctggaatgattctgcaacaatccttttcttgataaaaaagagcatgt
atggagtaggccccttcttggtggttcgaaaatcctttagccaggaaaca
accaagccaccgtttatgaaaaatcaaaggaaaaatcacattggcacaat
ataggcctcattttggaagaaaacaccctcaaattctaaggcttcaataa
tcccccccccccaattttgagctctgcatattggtattttttggctccag
atgggtagtcaatggcagatgtcttcaataaagacattattgaattttca
tcttgcatctctgagggcaggttgcattatagcacacatcagcagcccag
cttatgatctctgtagtctccggatgacaagcgaagggacttctctggac
tatggaccataaattgaggttaactgactcaggccattcattcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_43701973_43703034
seq2: B6Ng01-052E17.b_46_1100 (reverse)

seq1  GCCCACTGAAATATGTCTGGTGGAGACGAAGATTCCTGTCATTCTGGTAG  50
      |||| ||||||||||| | ||||||| |||||||| ||||||| ||||||
seq2  GCCCCCTGAAATATGT-TTGTGGAGAAGAAGATTCATGTCATT-TGGTAG  48

seq1  CTAAGAGAATTTGACCATATGCATTTCTTTCTCAGGAGTGTGACAGTGTG  100
      ||||||||| ||||||| | ||| ||||||||||||||||||||||||||
seq2  CTAAGAGAA-TTGACCA-AAGCAATTCTTTCTCAGGAGTGTGACAGTGTG  96

seq1  TCTAAGAGGCATACTTCTCTTTCAGCAGATTTGGGTCATCCCCTCCTTCT  150
       || || |||||||||||||||||||||||||||||||| ||||||||||
seq2  -CT-AGGGGCATACTTCTCTTTCAGCAGATTTGGGTCAT-CCCTCCTTCT  143

seq1  CAACCTTGATTTTGCACTGGGATGCCAGAATTTCCTTGACTTCTGTGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTGATTTTGCACTGGGATGCCAGAATTTCCTTGACTTCTGTGTTC  193

seq1  CTTCTATCTTAAAGGGATCAGTTTTTTTGTCTTTGATAGGAGGTATATGT  250
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTCTATCTTAAAGGGATCAGTGTTTTTGTCTTTGATAGGAGGTATATGT  243

seq1  ATTTTTCCTGGTGTTTCATATAGTTGCTTTTATTTTTGCTTCATGTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCTGGTGTTTCATATAGTTGCTTTTATTTTTGCTTCATGTGTCA  293

seq1  TGAAACATTCTTTGTTGGTTTTCTCCCTATTTGTATTTCTGATTAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATTCTTTGTTGGTTTTCTCCCTATTTGTATTTCTGATTAGAAAA  343

seq1  TGAATAAAAATAAATTATAAAAAAAGAGTAGAAAAGTCACTCAGAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAAATAAATTATAAAAAAAGAGTAGAAAAGTCACTCAGAAATAT  393

seq1  AAATTCACACCTGAATGGCCTCCTGACCCTAGCTTTATTGATTGTTATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACACCTGAATGGCCTCCTGACCCTAGCTTTATTGATTGTTATCT  443

seq1  CATCAGTTTCCCAGCTCCCCTCCCTAACCTAATTGAGTATAGATTTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTTTCCCAGCTCCCCTCCCTAACCTAATTGAGTATAGATTTTAAA  493

seq1  TACCCATGAGCTTCAATTACTTCTGTCCCCTTTCTTCTCTGTAAAAGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATGAGCTTCAATTACTTCTGTCCCCTTTCTTCTCTGTAAAAGGTA  543

seq1  ATGGGACTCAAAAGATTACAGAACAATTCCTCACTATAAAAAGAATTCAC  600
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACTCATAAGATTACAGAACAATTCCTCACTATAAAAAGAATTCAC  593

seq1  AATATCCCCAGCCTTCTTCCGTTCTATTTTTGAGTCTATTTTTGGACTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCCCAGCCTTCTTCCGTTCTATTTTTGAGTCTATTTTTGGACTAC  643

seq1  CTAATGCTCCTTGAAGAGAGGCATGCTGGCAAGTACTAATTTGGGTAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCTCCTTGAAGAGAGGCATGCTGGCAAGTACTAATTTGGGTAGTA  693

seq1  TTTATGGAGATTCTTTGCAATGTCCCTTTGTGTTACAGCAGTTCAAGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGAGATTCTTTGCAATGTCCCTTTGTGTTACAGCAGTTCAAGTCC  743

seq1  TTCCCATACCATTCAATACTCAGAAACCTCAAATACACACAGAATGATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATACCATTCAATACTCAGAAACCTCAAATACACACAGAATGATAA  793

seq1  GCCATGATAATGTCTTCCAAGCAATAAGTGCCCAAAACAAAACAGATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGATAATGTCTTCCAAGCAATAAGTGCCCAAAACAAAACAGATACA  843

seq1  CAATCATATTTTGCCACAGATCTTTCAAGAACAGCAAATGTTTGTATGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATATTTTGCCACAGATCTTTCAAGAACAGCAAATGTTTGTATGAG  893

seq1  TCAGAAATGGAAGAAACACTATCAGATTCCACAAAATCATGGTTGCCTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATGGAAGAAACACTATCAGATTCCACAAAATCATGGTTGCCTCC  943

seq1  CCCTCTTATAAACTGAATAACAGTAAAACACCATCACTGCAGTTCGCAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTATAAACTGAATAACAGTAAAACACCATCACTGCAGTTCGCAAC  993

seq1  AACTGCAATACCTATATCCCTGAAAGTTATATGAGCTTAACAAGCAGTTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAATACCTATATCCCTGAAAGTTATATGAGCTTAACAAGCAGTTG  1043

seq1  AAAATTGAATTC  1062
      ||||||||||||
seq2  AAAATTGAATTC  1055

seq1: chr14_43593316_43594424
seq2: B6Ng01-052E17.g_68_1161

seq1  GAATTCTTTCAAACCTTCAAAGAAGACCTAATACCTATTCCCTTCAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAAACCTTCAAAGAAGACCTAATACCTATTCCCTTCAAACC  50

seq1  ATTCCACAAAATAGAAACAAAAGGAATGATACCCAATGTGCTCTATGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACAAAATAGAAACAAAAGGAATGATACCCAATGTGCTCTATGGAG  100

seq1  CCACAGTTACACTGATACCAAAGCCACACAAAGACCCAACGAGGAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTACACTGATACCAAAGCCACACAAAGACCCAACGAGGAAAGAA  150

seq1  CTTCTGAATTTCACTTATGGATACCAGTGCAAAATTATGCAATTCACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAATTTCACTTATGGATACCAGTGCAAAATTATGCAATTCACTTC  200

seq1  TCATGATGAGTTTGTTACATGAGACCATGCAAGGTAACTAATGTCTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATGAGTTTGTTACATGAGACCATGCAAGGTAACTAATGTCTCTGT  250

seq1  GACTGTTTTCCTTATTTGAAAGTGAGTAATGAGATCGATCATCTGAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTTCCTTATTTGAAAGTGAGTAATGAGATCGATCATCTGAGGAG  300

seq1  TAACCACTCCTGACTAACATGAATGATAGGACTGTACAGAGCATGGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACTCCTGACTAACATGAATGATAGGACTGTACAGAGCATGGGCTT  350

seq1  AACGTTCTAGGTACAGTGCAAATAACTGGGGCAGTTAACAACAAAAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTCTAGGTACAGTGCAAATAACTGGGGCAGTTAACAACAAAAACCA  400

seq1  AAGGAAATAATAGAAATACTAACAACATTTTTAAAAAATATCTTCTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATAATAGAAATACTAACAACATTTTTAAAAAATATCTTCTGAGT  450

seq1  GCTGGGATTAAAGGCATGCCTCTGGCTAGTTTTATATGTATTTATAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTAAAGGCATGCCTCTGGCTAGTTTTATATGTATTTATAATAA  500

seq1  AAAACAACAAAATACCCTATTACAGGTCTAGCAGTTGCCGTAGAGGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACAAAATACCCTATTACAGGTCTAGCAGTTGCCGTAGAGGGAGC  550

seq1  TGTGTGATTCTGTGTGCTGCTTCCTTTCCCCAGATACCTCAAGTTATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGATTCTGTGTGCTGCTTCCTTTCCCCAGATACCTCAAGTTATCAG  600

seq1  TCCTGTACCAGGTGAGCTGGACCTAAGAGCAGCCTAGTTGACCTTCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTACCAGGTGAGCTGGACCTAAGAGCAGCCTAGTTGACCTTCCTGC  650

seq1  TGCCTGGAATGATTCTGCAACAATCCTTTTCTTGATAAAAAAGAGCATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGAATGATTCTGCAACAATCCTTTTCTTGATAAAAAAGAGCATGT  700

seq1  ATGGAGTAGGCCCCTTCTTGGTGGTTCGAAAATCCTTTAGGCCAGGAAAC  750
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGGAGTAGGCCCCTTCTTGGTGGTTCGAAAATCCTTTA-GCCAGGAAAC  749

seq1  AACCAAGCCACCGTTTATGAAAAATCAAAGGAAAAATCACATTGGCACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGCCACCGTTTATGAAAAATCAAAGGAAAAATCACATTGGCACAA  799

seq1  TATAGGCCTCATTTTGGAAGAAAACACCCTCAAATTCTAAGGCTTCAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCCTCATTTTGGAAGAAAACACCCTCAAATTCTAAGGCTTCAATA  849

seq1  ATCCCCCCCCCCCAATTTTGAGCTCTGCATATTGGTATTGTGTGGCTCCA  900
      ||||||||||||||||||||||||||||||||||||||| | ||||||||
seq2  ATCCCCCCCCCCCAATTTTGAGCTCTGCATATTGGTATTTTTTGGCTCCA  899

seq1  GAT-GGTAGTCAAAGGCAGATGTCTTCCAATAAAAGACATATATGAATTT  949
      ||| ||||||||| |||||||||||| |||| ||||||||   |||||||
seq2  GATGGGTAGTCAATGGCAGATGTCTT-CAAT-AAAGACATTATTGAATTT  947

seq1  TCATCTTGCATCTCTGAGGGCAGGTTGCATTATAGCACACATTCAGCACA  999
      ||||||||||||||||||||||||||||||||||||||||| ||||||  
seq2  TCATCTTGCATCTCTGAGGGCAGGTTGCATTATAGCACACA-TCAGCA-G  995

seq1  CCCAGCATAAGAACACAGAAGCCT-CAGATGACAAAGCCAAAGGGACTCC  1048
      |||||| || || | | | || || | ||||||||   | |||||||| |
seq2  CCCAGCTTATGATCTCTGTAGTCTCCGGATGACAA--GCGAAGGGACTTC  1043

seq1  ATCCTGAACTTATGGACCCATTAAAATTGAGGTTTAACCTGAACTCAGGC  1098
         ||| || |||||| ||||  |||||||||||  | ||| ||||||||
seq2  --TCTGGAC-TATGGA-CCAT--AAATTGAGGTT--AACTG-ACTCAGGC  1084

seq1  CATTCCATTCC  1109
      |||| ||||||
seq2  CATT-CATTCC  1094