BAC Information

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BAC

Clone NameB6Ng01-052O21
Chromosome14 (Build37)
Map Location 30,380,695 - 30,516,271
singlet/doubletdoublet
Overlap geneCacna2d3
Upstream geneLrtm1, Ppia-ps15
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052O21.bB6Ng01-052O21.g
ACCDH876136DH876137
length1,0541,001
definitionDH876136|Mus musculus domesticus DNA, BAC clone: B6Ng01-052O21, 5' end.DH876137|Mus musculus domesticus DNA, BAC clone: B6Ng01-052O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,380,695 - 30,381,737)(30,515,273 - 30,516,271)
sequence
gaattcactaccaagatcacgttagatgtttacaagtgtacatgctgtga
acatgaagactctaagtgtcttgactcacagctgtctgggtctatgtgct
acgggggcctcagaggtctgcaatgatctgcacagtattctgcacttcta
tattggcaccactgttctgcatacctcatgctttgtcccttacctgatgt
caatcattcaggggactatgagcataccaactcaatcttcaatcttaaaa
caaaggggcagggggaaaaagaacaaacttgtatttttacagctctaaac
cacagctctctgtattggtttactgcaaaaaaaaaaaaaaaactaatatc
cattacaaaaaatgtattgcatatattcaaaatggaaaagtcagtggaaa
ttctacaacattaccacacccgatagcaaaaaaacatgcctttaagatct
gagtgtgtggtcagcatattttgttgaaagtcgaacatacacatttgaaa
gaaatcaaaattgttctgtgcatgccattttttatgtaagctttcttata
tttaataaaaggctttctatgtcattaagtagttttctgtcacccttgct
tttattagccacgctctgatgccctggggcctctctgggaatcctgctct
tttgaatactgtaaaagctaaaagacagtcagcaatgactaatgtacata
aagtgtagaaggaggtctgactctgcgctgttttgctatatactcttagc
tccctttagggcagtgtgggatacaggttcccattatcaggcctcagaag
aattcctgggactgatcaagtctaacttccaatgaccactgtggattcca
gactcagcatccctcctggcaggctacactacacaattatcttttcttct
tactgacaatctgtgcagccattcaataaaacatcactgcactactggac
ctgccacaaatccttctgagtgtgcaaggctccattgttgatggccacag
gcacacatcttatgtagctgttctttgcctcagcagtttgaagaattgaa
gaat
gaattcttgccactcagataatcggtttcccttccttttggttgttttgg
cgtgatgccagtcaaagaaacctttgtgtcagagagtgcaggcgccttgt
ttacagttctgaaattgcagccttttctttggttctgtacaggatagagt
tcgaaggtccttccgtgtggagcttctgctgcagagggctggagatcaga
cctcatttgtttcccagtctgctcttcagtaggtgggggcccttccttca
tttcatatgatactagcacccctctttctaccagcagcacctgcctctcc
tctgtccacagctggcatctgcaggaggacagggaaatgtggagttgccg
ctggctctacccagctttgtaggctggcaccagactcgccagggagggct
cagtcgaatggccaaaagagaggattaaaacagctccagtaggaaggaaa
gcagaagtgatactcgattttagtaacaaaaaaaactacatttctgctat
cattctcccccaagagtccttgtaccgtagccttgttctttgagctgtgt
atgagaatggagtcatctctgaatataaaaggcaagaatatagggactaa
aatatttgacatatgatgaaattttgtggtattttagacagtgagtaaat
tgatatttatataaacccagtatattcatttctcccgaaccatccttcct
tgaatgtggacttaataacacgcttgactaaatgacattaattgctttaa
actgccaaattaaaaaaaaatccagtctagattcaacaagtgtgctgtat
tcacagcttcaggctagaggtggggaaaaagaacagtccttctgagtgtc
tcataggcatgtccccgtgagccctctaccaatatcgggacaatggacaa
acgagcttcatgaggctagatctagaaatggcttcacatcctggctctac
tggtgggcaggattgtgcctcgcagtttctagctctcctaatttcttcat
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_30380695_30381737
seq2: B6Ng01-052O21.b_50_1103

seq1  GAATTCACTACCAAGATCACGTTAGATGTTTACAAGTGTACATGCTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTACCAAGATCACGTTAGATGTTTACAAGTGTACATGCTGTGA  50

seq1  ACATGAAGACTCTAAGTGTCTTGACTCACAGCTGTCTGGGTCTATGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAGACTCTAAGTGTCTTGACTCACAGCTGTCTGGGTCTATGTGCT  100

seq1  ACGGGGGCCTCAGAGGTCTGCAATGATCTGCACAGTATTCTGCACTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGGCCTCAGAGGTCTGCAATGATCTGCACAGTATTCTGCACTTCTA  150

seq1  TATTGGCACCACTGTTCTGCATACCTCATGCTTTGTCCCTTACCTGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCACCACTGTTCTGCATACCTCATGCTTTGTCCCTTACCTGATGT  200

seq1  CAATCATTCAGGGGACTATGAGCATACCAACTCAATCTTCAATCTTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATTCAGGGGACTATGAGCATACCAACTCAATCTTCAATCTTAAAA  250

seq1  CAAAGGGGCAGGGGGAAAAAGAACAAACTTGTATTTTTACAGCTCTAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGGCAGGGGGAAAAAGAACAAACTTGTATTTTTACAGCTCTAAAC  300

seq1  CACAGCTCTCTGTATTGGTTTACTGCAAAAAAAAAAAAAAAACTAATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTCTCTGTATTGGTTTACTGCAAAAAAAAAAAAAAAACTAATATC  350

seq1  CATTACAAAAAATGTATTGCATATATTCAAAATGGAAAAGTCAGTGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAAAAAATGTATTGCATATATTCAAAATGGAAAAGTCAGTGGAAA  400

seq1  TTCTACAACATTACCACACCCGATAGCAAAAAAACATGCCTTTAAGATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAACATTACCACACCCGATAGCAAAAAAACATGCCTTTAAGATCT  450

seq1  GAGTGTGTGGTCAGCATATTTTGTTGAAAGTCGAACATACACATTTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGTGGTCAGCATATTTTGTTGAAAGTCGAACATACACATTTGAAA  500

seq1  GAAATCAAAATTGTTCTGTGCATGCCATTTTTTATGTAAGCTTTCTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAAAATTGTTCTGTGCATGCCATTTTTTATGTAAGCTTTCTTATA  550

seq1  TTTAATAAAAGGCTTTCTATGTCATTAAGTAGTTTTCTGTCACCCTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAAAGGCTTTCTATGTCATTAAGTAGTTTTCTGTCACCCTTGCT  600

seq1  TTTATTAGCCACGCTCTGATGCCCTGGGGCCTCTCTGGGAATCCTGCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAGCCACGCTCTGATGCCCTGGGGCCTCTCTGGGAATCCTGCTCT  650

seq1  TTTGAATACTGTAAAAGCTAAAAGACAGTCAGCAATGACTAATGTACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATACTGTAAAAGCTAAAAGACAGTCAGCAATGACTAATGTACATA  700

seq1  AAGTGTAGAAGGAGGTCTGACTCTGCGCTG-TTTGCTATATACTCTTAGC  749
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGTGTAGAAGGAGGTCTGACTCTGCGCTGTTTTGCTATATACTCTTAGC  750

seq1  TCCCTTTAGGGCAGTGTGGGATACAGG-TCCCATTATCAGGCCTCAGAAG  798
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCCCTTTAGGGCAGTGTGGGATACAGGTTCCCATTATCAGGCCTCAGAAG  800

seq1  AATTCCT-GGACTGATC-AGTCTAACTTCCAATGACCACTGTGGA-TCCA  845
      ||||||| ||||||||| ||||||||||||||||||||||||||| ||||
seq2  AATTCCTGGGACTGATCAAGTCTAACTTCCAATGACCACTGTGGATTCCA  850

seq1  GACTCAGCATCCCTCCTGGCAGGCTACACTACACAA-TATCTTTTCTCCT  894
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  GACTCAGCATCCCTCCTGGCAGGCTACACTACACAATTATCTTTTCTTCT  900

seq1  TACTGACAATCTGTGCAGCCA-TCAATAAAACATCACTGCACTACTGGAC  943
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TACTGACAATCTGTGCAGCCATTCAATAAAACATCACTGCACTACTGGAC  950

seq1  CTGCCACAAATCC-TCTGAGGTGTGCAAGGCTCCCATG-TGATGGCCACA  991
      ||||||||||||| ||||| ||||||||||||||  || |||||||||||
seq2  CTGCCACAAATCCTTCTGA-GTGTGCAAGGCTCCATTGTTGATGGCCACA  999

seq1  GGCACACATC-TATGTAAGCTGTTCTT--GCTCAGCAGTTTGAAGAA-TG  1037
      |||||||||| ||||| ||||||||||   ||||||||||||||||| ||
seq2  GGCACACATCTTATGT-AGCTGTTCTTTGCCTCAGCAGTTTGAAGAATTG  1048

seq1  AAGAAT  1043
      ||||||
seq2  AAGAAT  1054

seq1: chr14_30515273_30516271
seq2: B6Ng01-052O21.g_68_1068 (reverse)

seq1  GATGAAGAAAATA-GAGAGCTAAGAAACTGCGAGGCCACATCCTGCCCAC  49
      |||||||||| || ||||||| ||||||||||||||   |||||||||||
seq2  GATGAAGAAATTAGGAGAGCT-AGAAACTGCGAGGCACAATCCTGCCCAC  49

seq1  CAGTAGAGCCAGAATGTGAAGCCATTTCTAGATCTAGCCTCATGAAGCTC  99
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAGCCAGGATGTGAAGCCATTTCTAGATCTAGCCTCATGAAGCTC  99

seq1  GTTTGTCCATTGTCCCGATATTGGTAGAGGGCTCACGGGGACATTGCCTC  149
      ||||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  GTTTGTCCATTGTCCCGATATTGGTAGAGGGCTCACGGGGACA-TGCCTA  148

seq1  TGAGACACTCAG-AGGACTGTTCTTTTTCCCCACCTCTAGCCTG-AGCTG  197
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  TGAGACACTCAGAAGGACTGTTCTTTTTCCCCACCTCTAGCCTGAAGCTG  198

seq1  TGAATACAGCACACTTGTTGAATCTAGACTGGATTTTTTTTTAATTTGGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACAGCACACTTGTTGAATCTAGACTGGATTTTTTTTTAATTTGGC  248

seq1  AGTTTAAAGCAATTAATGTCATTTAGTCAAGCGTGTTATTAAGTCCACAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAAGCAATTAATGTCATTTAGTCAAGCGTGTTATTAAGTCCACAT  298

seq1  TCAAGGAAGGATGGTTCGGGAGAAATGAATATACTGGG-TTATATAAATA  346
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCAAGGAAGGATGGTTCGGGAGAAATGAATATACTGGGTTTATATAAATA  348

seq1  TCAATTTACTCACTGTCTAAAATACCACAAAATTTCATCATATGTCAAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTACTCACTGTCTAAAATACCACAAAATTTCATCATATGTCAAAT  398

seq1  ATTTTAGTCCCTATATTCTTGCCTTTTATATTCAGAGATGACTCCATTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTCCCTATATTCTTGCCTTTTATATTCAGAGATGACTCCATTCT  448

seq1  CATACACAGCTCAAAGAACAAGGCTACGGTACAAGGACTCTTGGGGGAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACAGCTCAAAGAACAAGGCTACGGTACAAGGACTCTTGGGGGAGA  498

seq1  ATGATAGCAGAAATGTAGTTTTTTTTGTTACTAAAATCGAGTATCACTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGCAGAAATGTAGTTTTTTTTGTTACTAAAATCGAGTATCACTTC  548

seq1  TGCTTTCCTTCCTACTGGAGCTGTTTTAATCCTCTCTTTTGGCCATTCGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCCTTCCTACTGGAGCTGTTTTAATCCTCTCTTTTGGCCATTCGA  598

seq1  CTGAGCCCTCCCTGGCGAGTCTGGTGCCAGCCTACAAAGCTGGGTAGAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCCTCCCTGGCGAGTCTGGTGCCAGCCTACAAAGCTGGGTAGAGC  648

seq1  CAGCGGCAACTCCACATTTCCCTGTCCTCCTGCAGATGCCAGCTGTGGAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGCAACTCCACATTTCCCTGTCCTCCTGCAGATGCCAGCTGTGGAC  698

seq1  AGAGGAGAGGCAGGTGCTGCTGGTAGAAAGAGGGGTGCTAGTATCATATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAGGCAGGTGCTGCTGGTAGAAAGAGGGGTGCTAGTATCATATG  748

seq1  AAATGAAGGAAGGGCCCCCACCTACTGAAGAGCAGACTGGGAAACAAATG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGGAAGGGCCCCCACCTACTGAAGAGCAGACTGGGAAACAAATG  798

seq1  AGGTCTGATCTCCAGCCCTCTGCAGCAGAAGCTCCACACGGAAGGACCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGATCTCCAGCCCTCTGCAGCAGAAGCTCCACACGGAAGGACCTT  848

seq1  CGAACTCTATCCTGTACAGAACCAAAGAAAAGGCTGCAATTTCAGAACTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACTCTATCCTGTACAGAACCAAAGAAAAGGCTGCAATTTCAGAACTG  898

seq1  TAAACAAGGCGCCTGCACTCTCTGACACAAAGGTTTCTTTGACTGGCATC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAGGCGCCTGCACTCTCTGACACAAAGGTTTCTTTGACTGGCATC  948

seq1  ACGCCAAAACAACCAAAAGGAAGGGAAACCGATTATCTGAGTGGCAAGAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCAAAACAACCAAAAGGAAGGGAAACCGATTATCTGAGTGGCAAGAA  998

seq1  TTC  999
      |||
seq2  TTC  1001