BAC Information

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BAC

Clone NameB6Ng01-054L03
Chromosome14 (Build37)
Map Location 12,394,197 - 12,510,838
singlet/doubletdoublet
Overlap genePtprg
Upstream geneFhit, LOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996
Downstream geneLOC100042441, 3830406C13Rik, EG667072, Fezf2, Cadps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054L03.bB6Ng01-054L03.g
ACCDH877371DH877372
length3291,103
definitionDH877371|Mus musculus domesticus DNA, BAC clone: B6Ng01-054L03, 5' end.DH877372|Mus musculus domesticus DNA, BAC clone: B6Ng01-054L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,394,197 - 12,394,505)(12,509,728 - 12,510,838)
sequence
ctatcagttactatgtgactccaaaagctgtctggtttctcatgccgact
gcctcataaagtcttcagcagcttaaatcagatcggtacatttatctgga
tggatttgcatgaaggacacagccattagcattttaccaggcctaggaac
agagtctagatgagtgaggaaatactgttatctttcaagatctttcctaa
cttaaatcatgtatttatttagtgtgtgtgtatttgtgcatggcgtgtgc
ccgtgtgtgcccgtgtgtgcccgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgcg
gaattcaccctggcactgcttcccaagctagcgatccaggctaacaggcc
ctctggaccactgcagacacacagaatgtccattcaacatagagactgag
attacaggttagtatacgaggttgctttttgtccattaactgtctgggta
gtaacccatcacacaaacaggtctcctttaaaatctcctagcaatgggta
ctgaggtcatttcaagtctcacggcagtccagggaagcttttcacacaga
tacctcagtgaggtaagagggttcttccacaagataaactccctgaaaat
agggtcactgagaggaaagatggtgtatttctgcccgcttctggaaactg
accagctgcttccaaagagttctcaaaatctatttccaatgacatgactg
cagatagcaccaccgagctgataaagagctttgatagcactgctcacaga
ggtggtattttatcaactgacaatcaacacgacagaaatgatgttatctc
acttcactaaggtagtgatttaatttacacacacacacacacacacacac
acacacacacacacacacacacacggaggggggctcttaaaaggctcttc
atgaactagcctcctgtctccgttgcgttgctctagcttttttgaattgt
aatcgtgaccatttcctaaggaattaagaattacctagaactgtgttccc
aggtctcttagaaaacagtctttctttaaaatactgttgcctctctctct
gaaatgacagcggttgaccctcaagccccatggtgtcatcccttgcccaa
tgctgaaacaccaaatttctactgtgtctcttaaattctctttggagtac
aggcctagagacaaattccaatgagcctttctcttcctcctcctcaccca
ccactgtcaatctgcccttcttctggcatcccttcccggaatagttgagt
ttcctattcttactgcagcgtgactatctaacttatcttgtctggctgag
actggaactcactgtctaagccagtattctatccttcgaggtcactcacc
ctgtcaccagtctaggacggatgtccaggcctctagcagattcttatact
atg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_12394197_12394505
seq2: B6Ng01-054L03.b_48_356

seq1  GAATTCCTATCAGTTACTATGTGACTCCAAAAGCTGTCTGGTTTCTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATCAGTTACTATGTGACTCCAAAAGCTGTCTGGTTTCTCATG  50

seq1  CCGACTGCCTCATAAAGTCTTCAGCAGCTTAAATCAGATCGGTACATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTGCCTCATAAAGTCTTCAGCAGCTTAAATCAGATCGGTACATTTA  100

seq1  TCTGGATGGATTTGCATGAAGGACACAGCCATTAGCATTTTACCAGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATGGATTTGCATGAAGGACACAGCCATTAGCATTTTACCAGGCCT  150

seq1  AGGAACAGAGTCTAGATGAGTGAGGAAATACTGTTATCTTTCAAGATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGAGTCTAGATGAGTGAGGAAATACTGTTATCTTTCAAGATCTT  200

seq1  TCCTAACTTAAATCATGTATTTATTTAGTGTGTGTGTATTTGTGCATGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACTTAAATCATGTATTTATTTAGTGTGTGTGTATTTGTGCATGGC  250

seq1  GTGTGCCCGTGTGTGCCCGTGTGTGCCCGTGTGTGTGTGTGTGTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCCGTGTGTGCCCGTGTGTGCCCGTGTGTGTGTGTGTGTGTGTGT  300

seq1  GTGTGTGTG  309
      |||||||||
seq2  GTGTGTGTG  309

seq1: chr14_12509728_12510838
seq2: B6Ng01-054L03.g_68_1170 (reverse)

seq1  CATAGTAATAAGGAATCTGCCTAGAGGCCTGGGACATCCGTCCTAGACTG  50
      |||||| |||| ||||||| |||||||||| |||||||||||||||||||
seq2  CATAGT-ATAA-GAATCTG-CTAGAGGCCT-GGACATCCGTCCTAGACTG  46

seq1  TGTGACAGGGTTGGGTTGGACCTCG-AGGGTAGAATACTGGCTTAAGACA  99
       ||||||||| || ||  ||||||| ||| |||||||||||||| |||||
seq2  -GTGACAGGG-TGAGT--GACCTCGAAGGATAGAATACTGGCTT-AGACA  91

seq1  GTGGGTTCCAGTCTCAGCCAGAC-AGATAAGTTAAGATAGTCACGCTGCA  148
      ||| ||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  GTGAGTTCCAGTCTCAGCCAGACAAGATAAGTT-AGATAGTCACGCTGCA  140

seq1  GTAAGAATAGGAAACTCAACTATTCCGGGAAGGGATGCCAGAAGAAGGGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAATAGGAAACTCAACTATTCCGGGAAGGGATGCCAGAAGAAGGGC  190

seq1  AGATTGACAGTGGTGGGTGAGGAGGAGGAAGAGGAAGGCTCATTGGAATT  248
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGATTGACAGTGGTGGGTGAGGAGGAGGAAGAGAAAGGCTCATTGGAATT  240

seq1  TGTCTCTAGGCCTGTACTCCAAAGAGAATTTAAGAGACACAGTAGAAATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTAGGCCTGTACTCCAAAGAGAATTTAAGAGACACAGTAGAAATT  290

seq1  TGGTGTTTCAGCATTGGGCAAGGGATGACACCATGGGGCTTGAGGGTCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTCAGCATTGGGCAAGGGATGACACCATGGGGCTTGAGGGTCAA  340

seq1  CCGCTGTCATTTCAGAGAGAGAGGCAACAGTATTTTAAAGAAAGACTGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGTCATTTCAGAGAGAGAGGCAACAGTATTTTAAAGAAAGACTGTT  390

seq1  TTCTAAGAGACCTGGGAACACAGTTCTAGGTAATTCTTAATTCCTTAGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGAGACCTGGGAACACAGTTCTAGGTAATTCTTAATTCCTTAGGA  440

seq1  AATGGTCACGATTACAATTCAAAAAAGCTAGAGCAACGCAACGGAGACAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCACGATTACAATTCAAAAAAGCTAGAGCAACGCAACGGAGACAG  490

seq1  GAGGCTAGTTCATGAAGAGCCTTTTAAGAGCCCCCCTCCGTGTGTGTGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTAGTTCATGAAGAGCCTTTTAAGAGCCCCCCTCCGTGTGTGTGTG  540

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAATTAAATCACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAATTAAATCACT  590

seq1  ACCTTAGTGAAGTGAGATAACATCATTTCTGTCGTGTTGATTGTCAGTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGTGAAGTGAGATAACATCATTTCTGTCGTGTTGATTGTCAGTTG  640

seq1  ATAAAATACCACCTCTGTGAGCAGTGCTATCAAAGCTCTTTATCAGCTCG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATACCACCTCTGTGAGCAGTGCTATCAAAGCTCTTTATCAGCTCG  690

seq1  GTGGTGCTATCTGCAGTCATGTCATTGGAAATAGATTTTGAGAACTCTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCTATCTGCAGTCATGTCATTGGAAATAGATTTTGAGAACTCTTT  740

seq1  GGAAGCAGCTGGTCAGTTTCCAGAAGCGGGCAGAAATACACCATCTTTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGCTGGTCAGTTTCCAGAAGCGGGCAGAAATACACCATCTTTCC  790

seq1  TCTCAGTGACCCTATTTTCAGGGAGTTTATCTTGTGGAAGAACCCTCTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGACCCTATTTTCAGGGAGTTTATCTTGTGGAAGAACCCTCTTA  840

seq1  CCTCACTGAGGTATCTGTGTGAAAAGCTTCCCTGGACTGCCGTGAGACTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTGAGGTATCTGTGTGAAAAGCTTCCCTGGACTGCCGTGAGACTT  890

seq1  GAAATGACCTCAGTACCCATTGCTAGGAGATTTTAAAGGAGACCTGTTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGACCTCAGTACCCATTGCTAGGAGATTTTAAAGGAGACCTGTTTG  940

seq1  TGTGATGGGTTACTACCCAGACAGTTAATGGACAAAAAGCAACCTCGTAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGGGTTACTACCCAGACAGTTAATGGACAAAAAGCAACCTCGTAT  990

seq1  ACTAACCTGTAATCTCAGTCTCTATGTTGAATGGACATTCTGTGTGTCTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCTGTAATCTCAGTCTCTATGTTGAATGGACATTCTGTGTGTCTG  1040

seq1  CAGTGGTCCAGAGGGCCTGTTAGCCTGGATCGCTAGCTTGGGAAGCAGTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTCCAGAGGGCCTGTTAGCCTGGATCGCTAGCTTGGGAAGCAGTG  1090

seq1  CCAGGGTGAATTC  1111
      |||||||||||||
seq2  CCAGGGTGAATTC  1103