BAC Information

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BAC

Clone NameB6Ng01-054O18
Chromosome14 (Build37)
Map Location 54,270,760 - 54,271,958
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124
Downstream geneA430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054O18.bB6Ng01-054O18.g
ACCDH877530DH877531
length7141,192
definitionDH877530|Mus musculus domesticus DNA, BAC clone: B6Ng01-054O18, 5' end.DH877531|Mus musculus domesticus DNA, BAC clone: B6Ng01-054O18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaacagagttctggtgctatggatgggcaggctgggggattgcc
atgctctctccatgtgtccccaggtgggcatctggctgtggaaagccatg
gaaccccagtctgtgggagatggagagggagcattccgaggtctctggga
ctcatggaggccagagatgacaggcgctcagtctcagacatccgagatat
ctctgtatatctcagaagagctgagaattaagtgggggctctgggggcag
cgggcaggggtagagggggtgcttggtggttcccacgtgggagagagtcc
ttgatccagtggtggcagttggaaatgctggaaggccttcccaaaggata
ttagacgtgtctctttagggaaggcccattccatcgttcaagcacagggt
tcttgatgagcagagacaggccatggttttagagctttattgcagaaagg
cagagaaaaagagaaaaggtagagaaagcaagatcagccattgccacatt
tggggggtgggagaaggagagctagagatgagaataaaagaggtgagagc
ttaagagagagaggaggggccaagcagccctttatatagtgggctgggct
atcttgcagttgcagggtagctgtggggaggagcatacctggctattgtc
aggttactgtgagggtggagtctagccagaataccaggagcttgggactt
tgttttttaaatct
gaattcttatagaatcatcattaagaattaagaaatcatctgtctatgta
gcatcataagacagtgcatctttgttgatctgcagaaatctgcccaaacg
gtgggctaatacccagtgactgttttacatattttttaacaggaaaagca
tatcactagcaggaatctttcctaaagtgtcctccctttggccttatcta
gacgggatcatccattgtgattttatagtccatggtgaaaccatctcaga
aaagatcacctgctagtttttagaatcgcctagatgcttcctaacaaact
acacattgcaaaaataattttccaataaactctccagctttttaactttg
ttattgttttgttttaggcaggttgtagctgttgtattgggttgcttcaa
actgacaatcctctgccacaggtacacaggtaacttaaaactgcaggcag
atgctattaagtccaactgaggaacctttaaaaaggagaactacaaacaa
gttcatcggatgttacagtttttcattaaaatgttctttaaaatttgttt
cccttgttgacttatcaggctttttaataaagcatcagggcttttgcttc
ttagagtaaagaatataaattttacatctgttaacaatattttgttgttt
gcatttagtgagttctctaagtgcatattgccttccctgccctgcctggg
attctcctgccaaattcagagaggtggacttgcaggatccctttgctctg
aaggtattttggttgtttgttaacttaggaaggcttgctaaagtcacagt
gagacaatgaagtctaagatcattactaattagggactcatgtgacattt
tcgatcaattagagtttattttgttgaactagacgctaaagctccatgca
ctcacaggcccaggcttaccctttgtggctatgtagtagctctctcctga
ctagctgtgggtctgaagtctctttttcagataaggagacttgctgggcc
tcttgtttacagagttcattcacctcacgtgctaatccgctggtggtttg
gtggttcctagctatagaaaggttttcctgggagaactgatagtattcat
gttaagcaccccaggaggccttgactttagttgatgatgggagctattta
cctctttttcatggcagttatgcagtacctaaaacgggcggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_54270760_54271958
seq2: B6Ng01-054O18.g_67_1258 (reverse)

seq1  CCCGCCCCTGTTTCTAGGTAATTTGCATAAACTG-CATGATAAAAGAGGT  49
      |||||||  |||| ||||||   ||||| ||||| ||||| |||||||||
seq2  CCCGCCC--GTTT-TAGGTA--CTGCAT-AACTGCCATGA-AAAAGAGGT  43

seq1  AAATAGCTTCCATTCATCAACTAAAAGTCATAGGCTACCT-GGGTGCTTT  98
      |||||||| ||| ||||||||| ||||||| ||||  ||| |||||| ||
seq2  AAATAGCTCCCA-TCATCAACT-AAAGTCA-AGGCCTCCTGGGGTGC-TT  89

seq1  AACAATGAATACTATCAGTGTCTCCAAGAAACACC-TTCTATAGCTAGGA  147
      ||| ||||||||||||||| ||||| || || ||| ||||||||||||||
seq2  AAC-ATGAATACTATCAGT-TCTCCCAGGAAAACCTTTCTATAGCTAGGA  137

seq1  A-CACCAAA-CAACAGC-GATTAGCACGTGAAGTGAATGAACTCTGTAAA  194
      | ||||||| || |||| ||||||||||||| ||||||||||||||||||
seq2  ACCACCAAACCACCAGCGGATTAGCACGTGAGGTGAATGAACTCTGTAAA  187

seq1  CAAGAGGCACAGCAAGTCT-CATATCTGAAAAAGGAGACTTCAGA-CCAC  242
      |||||||| |||||||||| | ||||||||||| ||||||||||| ||||
seq2  CAAGAGGCCCAGCAAGTCTCCTTATCTGAAAAA-GAGACTTCAGACCCAC  236

seq1  AGCTAGTCAGGAGAGAGCTACTACATAGCCACAAAGGGTAAGCCTTGGGC  292
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGCTAGTCAGGAGAGAGCTACTACATAGCCACAAAGGGTAAGCC-TGGGC  285

seq1  CTGTGAGTGCATGGAGCTTTAGCGTCTAGTTCAACAAAATAAACTCTAAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTGCATGGAGCTTTAGCGTCTAGTTCAACAAAATAAACTCTAAT  335

seq1  TGATCGAAAATGTCACATGAGTCCCTAATTAGTAATGATCTTAGACTTCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCGAAAATGTCACATGAGTCCCTAATTAGTAATGATCTTAGACTTCA  385

seq1  TTGTCTCACTGTGACTTTAGCAAGCCTTCCTAAGTTAACAAACAACCAAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCACTGTGACTTTAGCAAGCCTTCCTAAGTTAACAAACAACCAAA  435

seq1  ATACCTTCAGAGCAAAGGGATCCTGCAAGTCCACCTCTCTGAATTTGGCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTCAGAGCAAAGGGATCCTGCAAGTCCACCTCTCTGAATTTGGCA  485

seq1  GGAGAATCCCAGGCAGGGCAGGGAAGGCAATATGCACTTAGAGAACTCAC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATCCCAGGCAGGGCAGGGAAGGCAATATGCACTTAGAGAACTCAC  535

seq1  TAAATGCAAACAACAAAATATTGTTAACAGATGTAAAATTTATATTCTTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCAAACAACAAAATATTGTTAACAGATGTAAAATTTATATTCTTT  585

seq1  ACTCTAAGAAGCAAAAGCCCTGATGCTTTATTAAAAAGCCTGATAAGTCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAGAAGCAAAAGCCCTGATGCTTTATTAAAAAGCCTGATAAGTCA  635

seq1  ACAAGGGAAACAAATTTTAAAGAACATTTTAATGAAAAACTGTAACATCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGAAACAAATTTTAAAGAACATTTTAATGAAAAACTGTAACATCC  685

seq1  GATGAACTTGTTTGTAGTTCTCCTTTTTAAAGGTTCCTCAGTTGGACTTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACTTGTTTGTAGTTCTCCTTTTTAAAGGTTCCTCAGTTGGACTTA  735

seq1  ATAGCATCTGCCTGCAGTTTTAAGTTACCTGTGTACCTGTGGCAGAGGAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATCTGCCTGCAGTTTTAAGTTACCTGTGTACCTGTGGCAGAGGAT  785

seq1  TGTCAGTTTGAAGCAACCCAATACAACAGCTACAACCTGCCTAAAACAAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTTTGAAGCAACCCAATACAACAGCTACAACCTGCCTAAAACAAA  835

seq1  ACAATAACAAAGTTAAAAAGCTGGAGAGTTTATTGGAAAATTATTTTTGC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAACAAAGTTAAAAAGCTGGAGAGTTTATTGGAAAATTATTTTTGC  885

seq1  AATGTGTAGTTTGTTAGGAAGCATCTAGGCGATTCTAAAAACTAGCAGGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTAGTTTGTTAGGAAGCATCTAGGCGATTCTAAAAACTAGCAGGT  935

seq1  GATCTTTTCTGAGATGGTTTCACCATGGACTATAAAATCACAATGGATGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTTCTGAGATGGTTTCACCATGGACTATAAAATCACAATGGATGA  985

seq1  TCCCGTCTAGATAAGGCCAAAGGGAGGACACTTTAGGAAAGATTCCTGCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTCTAGATAAGGCCAAAGGGAGGACACTTTAGGAAAGATTCCTGCT  1035

seq1  AGTGATATGCTTTTCCTGTTAAAAAATATGTAAAACAGTCACTGGGTATT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATATGCTTTTCCTGTTAAAAAATATGTAAAACAGTCACTGGGTATT  1085

seq1  AGCCCACCGTTTGGGCAGATTTCTGCAGATCAACAAAGATGCACTGTCTT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACCGTTTGGGCAGATTTCTGCAGATCAACAAAGATGCACTGTCTT  1135

seq1  ATGATGCTACATAGACAGATGATTTCTTAATTCTTAATGATGATTCTATA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCTACATAGACAGATGATTTCTTAATTCTTAATGATGATTCTATA  1185

seq1  AGAATTC  1199
      |||||||
seq2  AGAATTC  1192