BAC Information

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BAC

Clone NameB6Ng01-055N09
Chromosome14 (Build37)
Map Location 109,710,853 - 109,711,998
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055N09.bB6Ng01-055N09.g
ACCDH878175DH878176
length1,0931,118
definitionDH878175|Mus musculus domesticus DNA, BAC clone: B6Ng01-055N09, 5' end.DH878176|Mus musculus domesticus DNA, BAC clone: B6Ng01-055N09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactatggaaatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcacagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatcgacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagagggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagataa
aaggatggaccatgtagacctagcatatccggggatccatcccataatca
gcttccaaatgctgacaccattgcatacactagcaagattatgctgaaag
gaccttgatatagctgtttttttgtcagagtatgctgggcttagcaaaca
tagaagtggatgctcacagtctgctattggaaggatcacatggcccccat
gaagagcagagaaagtaccaaagaactaaagggatctgcaacccttatag
tgaacaacattatgaactaaccagtaccccgactctctgatcttagctgc
atatgctatatagatggcctagtcggcatcactgcaataaagt
gaattccttaggcgtcatcagagaagctgacatttaagtagtgtgcactc
attaatgaagggctcacaactaatcaatgtgcagagaattagtgactctg
atatactctcctccacatgtgacatctaaaactatcatcccatggaagat
gaacattatgaaaaagaaaacagaaagaagatatgacctagaggttggca
gtgagttctactcaattgtatcttctggtcattgtattcatgttgggcgt
ccacaggtagttatcttcaacttgtacaaaatcggttctctcatgaatgg
aggaaaggaaatatactttatattgttgtagtgcagataaatgaatcggt
cttctcaatagttatgagctttttttttcttctaaaatggtctcttctat
ctttttaagatagcaagtatattatgagaattattgccatcctgtggtac
aataagacatcaaattttcttctgcgtaagaataatcttgacaaacttga
ttaatggtctccttctctgtcactgtccttaatttatagttactactatt
gcactcttgatttctattagatcaacagtaaaaattacagtgcccattat
gacttgatttgatttgctctttcccactctggtcagagtttaaactatga
tggaaatataacgaagttgggaaatgtctaacagtgtgctgttgtgagag
gtctatggagatcagaaccttggaaatgatgagggcatttctaatggggc
tctaaagaacaccctttttcttattagagtaaattgttataaaacattgg
gatgagaaattctctgcttcaccctcaggaatgttatctctccctcttac
ccttgttcacctttcatttaggtcaaccatacaccatcaaattcagtaag
ctgatcttatttgaagcatctacactaggagccagatagttattgttttc
ataaatatgtactctcttggtttttgtttataacaacatagattataaag
ataattatattctacaaattattaattatatcatcatatgatcagtacta
ctgtgctaatatcagtgatttatatgttatggtattattaagaatttgta
atcagcaatccttatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109710853_109711998
seq2: B6Ng01-055N09.g_69_1186 (reverse)

seq1  AAAATAAAGAGTATGCTGATTATACAAATATCTTAATATATACACATATA  50
      ||||||| ||   |||||||  ||||||| |||||||| |||| |||| |
seq2  AAAATAAGGA--TTGCTGAT--TACAAAT-TCTTAATA-ATAC-CATA-A  42

seq1  CATATATATCACTTGATATTTAGCACCATGTAGTTTACTGATCATTATGA  100
      |||||| ||||| ||||| |||||||   ||||  ||||||||| |||||
seq2  CATATAAATCAC-TGATA-TTAGCAC--AGTAG--TACTGATCA-TATGA  85

seq1  TGATATAAATTAATATATTTGTTATGAATATAATTTATTCTTTTATAATT  150
      |||||| |||||||| ||||||   |||||||| ||||   |||||||| 
seq2  TGATAT-AATTAATA-ATTTGT--AGAATATAA-TTAT--CTTTATAAT-  127

seq1  CCTATGTTGTTTATATAACAAAAACCAAGAGAGTACATATTTATGAAAAC  200
       |||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  -CTATGTTG-TTATA-AACAAAAACCAAGAGAGTACATATTTATGAAAAC  174

seq1  AATAACTTATCTGGCTCCTAGTTGTAGATGCTTCAAATAAGATCAGCTTA  250
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  AATAAC-TATCTGGCTCCTAG-TGTAGATGCTTCAAATAAGATCAGCTTA  222

seq1  CTGAATTTGATGGTGTATGGTTGACCTAAATGAAAGGTGAACAAGGGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTGATGGTGTATGGTTGACCTAAATGAAAGGTGAACAAGGGTAA  272

seq1  GAGGGAGAGATAACATTCCTGAGGGTGAAGCAGAGAATTTCTCATCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGAGATAACATTCCTGAGGGTGAAGCAGAGAATTTCTCATCCCAA  322

seq1  TGTTTTATAACAATTTACTCTAATAAGAAAAAGGGTGTTCTTTAGAGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATAACAATTTACTCTAATAAGAAAAAGGGTGTTCTTTAGAGCCC  372

seq1  CATTAGAAATGCCCTCATCATTTCCAAGGTTCTGATCTCCATAGACCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAAATGCCCTCATCATTTCCAAGGTTCTGATCTCCATAGACCTCT  422

seq1  CACAACAGCACACTGTTAGACATTTCCCAACTTCGTTATATTTCCATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAGCACACTGTTAGACATTTCCCAACTTCGTTATATTTCCATCAT  472

seq1  AGTTTAAACTCTGACCAGAGTGGGAAAGAGCAAATCAAATCAAGTCATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAACTCTGACCAGAGTGGGAAAGAGCAAATCAAATCAAGTCATAA  522

seq1  TGGGCACTGTAATTTTTACTGTTGATCTAATAGAAATCAAGAGTGCAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACTGTAATTTTTACTGTTGATCTAATAGAAATCAAGAGTGCAATA  572

seq1  GTAGTAACTATAAATTAAGGACAGTGACAGAGAAGGAGACCATTAATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAACTATAAATTAAGGACAGTGACAGAGAAGGAGACCATTAATCAA  622

seq1  GTTTGTCAAGATTATTCTTACGCAGAAGAAAATTTGATGTCTTATTGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCAAGATTATTCTTACGCAGAAGAAAATTTGATGTCTTATTGTAC  672

seq1  CACAGGATGGCAATAATTCTCATAATATACTTGCTATCTTAAAAAGATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGATGGCAATAATTCTCATAATATACTTGCTATCTTAAAAAGATAG  722

seq1  AAGAGACCATTTTAGAAGAAAAAAAAAGCTCATAACTATTGAGAAGACCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACCATTTTAGAAGAAAAAAAAAGCTCATAACTATTGAGAAGACCG  772

seq1  ATTCATTTATCTGCACTACAACAATATAAAGTATATTTCCTTTCCTCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTATCTGCACTACAACAATATAAAGTATATTTCCTTTCCTCCAT  822

seq1  TCATGAGAGAACCGATTTTGTACAAGTTGAAGATAACTACCTGTGGACGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGAGAACCGATTTTGTACAAGTTGAAGATAACTACCTGTGGACGC  872

seq1  CCAACATGAATACAATGACCAGAAGATACAATTGAGTAGAACTCACTGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATGAATACAATGACCAGAAGATACAATTGAGTAGAACTCACTGCC  922

seq1  AACCTCTAGGTCATATCTTCTTTCTGTTTTCTTTTTCATAATGTTCATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTAGGTCATATCTTCTTTCTGTTTTCTTTTTCATAATGTTCATCT  972

seq1  TCCATGGGATGATAGTTTTAGATGTCACATGTGGAGGAGAGTATATCAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGGATGATAGTTTTAGATGTCACATGTGGAGGAGAGTATATCAGA  1022

seq1  GTCACTAATTCTCTGCACATTGATTAGTTGTGAGCCCTTCATTAATGAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTAATTCTCTGCACATTGATTAGTTGTGAGCCCTTCATTAATGAGT  1072

seq1  GCACACTACTTAAATGTCAGCTTCTCTGATGACGCCTAAGGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTACTTAAATGTCAGCTTCTCTGATGACGCCTAAGGAATTC  1118