BAC Information

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BAC

Clone NameB6Ng01-056N16
Chromosome14 (Build37)Y (Build37)
Map Location 120,843,085 - 120,844,3231,870,346 - 1,870,421
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneHs6st3, EG621324, LOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831, Mbnl2
Downstream geneRap2a, LOC668835, LOC668837, Ranbp5, Farp1, LOC100043837, Stk24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056N16.bB6Ng01-056N16.g
ACCDH878889DH878890
length1,208500
definitionDH878889|Mus musculus domesticus DNA, BAC clone: B6Ng01-056N16, 5' end.DH878890|Mus musculus domesticus DNA, BAC clone: B6Ng01-056N16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(120,843,085 - 120,844,323)(1,870,346 - 1,870,421)
sequence
gaattcccttgcaatggaattagtaaaccaagggccaattgtcaggtact
ggcctagctcagcagactgctcggcaatttatattttattgtaactaaca
tttcagagcaccatttcttgggcacaatggaataaatatattggatgagt
ctctggagaatagcaaagacgactagataaaatattgaaactatctcttt
aagtatcatggacttttgaaggagggaagtacacgggataattctgtagc
gtaacccaacactatctctagctcacctggaagactctgttggtttcagg
cagagagactgacagaagaaccagctggcaatctgagggccagcccaatg
ttcactagcctgtctcaggcccaaatttaagggagagccaaaacccctaa
gattcaaaaaataactttaaggaaatggttttttaaaaatactaaattat
tggtgctggagagatagctcttttagcttagtacctgccctgtaaacatg
gggacctgagttcagtctccagaactcatataaacatgccagatataggg
ggtgcgtacttacaaatccagaagtggggagccagcctaatcgaatcagg
gagtcttgggatgctgagagactatgttttgaaaaaccaaggtggatagc
acctgaggtcttgttacttagttgctttattttcacactgtacacaaact
cgtggttagtaatgagatacaggaagtggaacgtggggaaaacatagtga
agaaatgaggcaaagctggttactccagactgtgggatgtttgatagaga
aaacaccaaagatcaacagctattgggtgttatgcaaatgtgtcattaca
cctcagttgacctttggttccacttgcaagtgcacacacacacacacaca
cacacacacacacgcacgcatgcacacattcacccttgcatacctgaaca
tgtgcactacacatgcaagtaatacacataccccccacattaaattattg
caaagcattagtttgaaaccagataggctagactacttattgatctcaac
ttaaacaaagccggaaaacctgggtgaataatttacggaagaaactgatc
ttcggggcggaaaaaactgtgtattctctaaggatcgaatggcacataaa
agatcgactctgtgtataaaaaagtctctgggaacatagaccccgctcaa
aggaattt
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
tttctggagtccaccttcttatacccgagatataagatacaatttgcaaa
acacatgaaactgaagaagaacgaagaccaaagtgtggacactttgctcc
ttcttagaattggaaacaatcacccatggaaggagttacagagacaaagt
ttggagctgagaccaaaggatggaccatctagagtctgccatatccagag
atccatcccataattagcctccaaatgatgacaccattgcatacactagc
aagattttgctgaaaggaccctgatatagccgtctcttgtgagactaggc
cggggcctagcaaacacagaagtggatgctcacagtcagctattggatgg
agcatagggcccctaatggaggagctagagaaagtatccaaggagctaaa
gagatctgcaaccctataggtgcaacaacattatgaactaaccagtaccc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_120843085_120844323
seq2: B6Ng01-056N16.b_47_1254

seq1  GAATTCCCTTGCAATGGAATTAGTAAACCAAGGGCCAATTGTCAGGTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTGCAATGGAATTAGTAAACCAAGGGCCAATTGTCAGGTACT  50

seq1  GGCCTAGCTCAGCAGACTGCTCGGCAATTTATATTTTATTGTAACTAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGCTCAGCAGACTGCTCGGCAATTTATATTTTATTGTAACTAACA  100

seq1  TTTCAGAGCACCATTTCTTGGGCACAATGGAATAAATATATTGGATGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGCACCATTTCTTGGGCACAATGGAATAAATATATTGGATGAGT  150

seq1  CTCTGGAGAATAGCAAAGACGACTAGATAAAATATTGAAACTATCTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAGAATAGCAAAGACGACTAGATAAAATATTGAAACTATCTCTTT  200

seq1  AAGTATCATGGACTTTTGAAGGAGGGAAGTACACGGGATAATTCTGTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCATGGACTTTTGAAGGAGGGAAGTACACGGGATAATTCTGTAGC  250

seq1  GTAACCCAACACTATCTCTAGCTCACCTGGAAGACTCTGTTGGTTTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCCAACACTATCTCTAGCTCACCTGGAAGACTCTGTTGGTTTCAGG  300

seq1  CAGAGAGACTGACAGAAGAACCAGCTGGCAATCTGAGGGCCAGCCCAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGACTGACAGAAGAACCAGCTGGCAATCTGAGGGCCAGCCCAATG  350

seq1  TTCACTAGCCTGTCTCAGGCCCAAATTTAAGGGAGAGCCAAAACCCCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAGCCTGTCTCAGGCCCAAATTTAAGGGAGAGCCAAAACCCCTAA  400

seq1  GATTCAAAAAATAACTTTAAGGAAATGGTTTTTTAAAAATACTAAATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAAAAATAACTTTAAGGAAATGGTTTTTTAAAAATACTAAATTAT  450

seq1  TGGTGCTGGAGAGATAGCTCTTTTAGCTTAGTACCTGCCCTGTAAACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTGGAGAGATAGCTCTTTTAGCTTAGTACCTGCCCTGTAAACATG  500

seq1  GGGACCTGAGTTCAGTCTCCAGAACTCATATAAACATGCCAGATATAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTGAGTTCAGTCTCCAGAACTCATATAAACATGCCAGATATAGGG  550

seq1  GGTGCGTACTTACAAATCCAGAAGTGGGGAGCCAGCCTAATCGAATCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCGTACTTACAAATCCAGAAGTGGGGAGCCAGCCTAATCGAATCAGG  600

seq1  GAGTCTTGGGATGCTGAGAGACTATGTTTTGAAAAACCAAGGTGGATAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTGGGATGCTGAGAGACTATGTTTTGAAAAACCAAGGTGGATAGC  650

seq1  ACCTGAGGTCTTGTTACTTAGTTGCTTTATTTTCACACTGTACACAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGGTCTTGTTACTTAGTTGCTTTATTTTCACACTGTACACAAACT  700

seq1  CGTGGTTAGTAATGAGATACAGGAAGTGGAACGTGGGGAAAACATAGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTTAGTAATGAGATACAGGAAGTGGAACGTGGGGAAAACATAGTGA  750

seq1  AGAAATGAGGCAAAGCTGGTTACTCCAGACTGTGGGATGTTTGATAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAGGCAAAGCTGGTTACTCCAGACTGTGGGATGTTTGATAGAGA  800

seq1  AAACACCAAAGAATCAACAGCTATTGGGTGTTTATGCAAATGTGTCATTA  850
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  AAACACCAAAG-ATCAACAGCTATTGGGTG-TTATGCAAATGTGTCATTA  848

seq1  CACCTCAGGTTGACCTTTGGTTCCACTTGCAAGTGCACACACACACACAC  900
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCA-GTTGACCTTTGGTTCCACTTGCAAGTGCACACACACACACAC  897

seq1  ACACACACACACACACGCACGCATGCACACATTCACCCTTGCATACCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACGCACGCATGCACACATTCACCCTTGCATACCTGA  947

seq1  ACATGTGCACATACACATGCAAGTAATACACATACACACACACAATTAAA  1000
      |||||||||| |||||||||||||||||||||||| | | ||| ||||||
seq2  ACATGTGCAC-TACACATGCAAGTAATACACATAC-CCCCCAC-ATTAAA  994

seq1  TTATATGCAAAGCAATAAGTTTGAAAACAAAGATAGGCTAGTACTACTTA  1050
      |||| |||||||| || ||||||||| |  ||||||||||| ||||||||
seq2  TTAT-TGCAAAGC-ATTAGTTTGAAACC--AGATAGGCTAG-ACTACTTA  1039

seq1  TTTGATCTACAACTTAGACAAAGACAGTAAAACCATAGGTGGATATATTT  1100
       ||||||| ||||||| |||||| | | |||||| | |||| ||| ||||
seq2  -TTGATCT-CAACTTAAACAAAG-CCGGAAAACC-TGGGTGAATA-ATTT  1084

seq1  ACGGGAGTAAACGTGCATTATCGGTGCAGTGAAGAAAACTGTGTTATCTT  1150
      |||| || |||| || ||  |||| ||   | | |||||||||   | ||
seq2  ACGGAAG-AAAC-TG-ATCTTCGGGGC---GGAAAAAACTGTG---TATT  1125

seq1  CTC-AAGGATCGGATTGCATCATTAGATAAGATCGCATCTGTTTATAATA  1199
      ||| |||||||| || ||| |||   | |||||||  ||||| ||||  |
seq2  CTCTAAGGATCGAATGGCA-CAT---AAAAGATCGACTCTGTGTATA--A  1169

seq1  AAAAGTCTCATGGTAAACTAGAGCCCGCTCAAAGGAATTT  1239
      ||||||||| ||| ||  |||| |||||||||||||||||
seq2  AAAAGTCTC-TGGGAACATAGACCCCGCTCAAAGGAATTT  1208

seq1: chrY_1870346_1870421
seq2: B6Ng01-056N16.g_495_570

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| |||||||||||||| |||||||||||||||||||| |
seq2  CTAGAGAAAGTATCCAAGGAGCTAAAGAGATCTGCAACCCTATAGGTGCA  50

seq1  ACAACATTATGAACTAACCATTACCC  76
      |||||||||||||||||||| |||||
seq2  ACAACATTATGAACTAACCAGTACCC  76