BAC Information

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BAC

Clone NameB6Ng01-057D09
Chromosome6 (Build37)14 (Build37)
Map Location 21,942,581 - 21,943,62151,380,918 - 51,381,264
singlet/doubletsingletsinglet
Overlap geneA430107O13Rik
Upstream geneKcnd2, LOC100041343, Tspan12, LOC100041358, Ing3
Downstream geneLOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018, LOC668022, Ptprz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057D09.bB6Ng01-057D09.g
ACCDH879150DH879151
length1,039754
definitionDH879150|Mus musculus domesticus DNA, BAC clone: B6Ng01-057D09, 5' end.DH879151|Mus musculus domesticus DNA, BAC clone: B6Ng01-057D09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,942,581 - 21,943,621)(51,380,918 - 51,381,264)
sequence
gaattccttaggtattgggcaatcactacagaaagcaaaggtggccatgc
attgatgtataagaaaatattccagaaaacaagttacgaaatgaactgaa
gcaaagtacagctaaagagagaccggccggctgggggctggctggagaag
cattccttccgccatattttgtcttccttgatcatttgtaagcactttct
tgttcagtctcctgctgcattggccccacattacactattataatattta
taagaagttttggacgtctccattggaccagttagcatgcttgtaagtat
gacacagcaacaagcttctggggacgtgacaatctaactaatgtccttgc
tctttctctcattcccttcacagagactgtaactgcttcttttgtgagta
ctccctggtcacctccccattctagcctttgaatttggtcctctctactg
aaatttctctccctgttacccccaacaatcaatacttctacaccttcacc
ttcatccttcttctagaaagatctttcattactaaagaaaacatcttcaa
atttccctctgtaactgagcaggacagtagacatatcctatgacctctga
atgactgtttcttttcaaggtttgtgtgtgtcccttcttcttctcatgat
ggaagtgggcatctccagctgtcgtcccttgggcatctgtcttgttttat
tccttcccttgatgaacgaatgtgttactcatcaaatgcatcttccattc
tctgctgttttctagagtggtaaaaatgcctaagaacatttaaatatgat
gaaatcaacaattccttgaccttcttgcttgatgactaagatctgacttc
ctcctacaggcttctgataatattaatatatggttggaaccatgggatta
ctttgttcttgccactgtaaatttagtgatctggctctgacagatgtgag
tctggcccctcacagactggctccaattggagtgtctatacattcatgtt
tttctttcctttctgtgtttaatccttttaaagggataa
gaattctttatttagctctgtacccattttttaatagggttatttggttt
tctggcgtccaccttctcgagttctttatatatattggatattagccccc
tatcagatttaagattggtaaagatcttttcctaatctgttggttgccgt
tttgtcttattgacggtgtcttttgccttatagttttatgaagtcccatt
tgatgattcttgatcttacagcacaagccattgctgttctgttcaggaat
atttcccctgtgcccatatcttcgaggctcttccccactttctcctctat
aagtttcagtatatctggttttatatggagttccttgatctacttagacc
tgagctctgtacaaggagataagaatggatcaatttgcattcttctacat
gctaaccgccagtgaagccagcaccatttgttgatgctcaagaagaagga
agaccaaagtatggatacttcagtctttcttaggagggggaacaaagtac
ccatggaaggaattacagagacaaagtgtgaagcagaaacgagcattcag
agactgctccacctggggatccatcccataagcaaccatcaaaaccagac
actattgtggatgccaataagagcttgctgacaggagcctgatatctatg
cttttcaaagcaaatgcctttcaaccacaatctaaaatatcatttcaact
atgtgagcaatttatgcactctaatcaccttttgggaaaaaagaactttt
taac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_21942581_21943621
seq2: B6Ng01-057D09.b_47_1078

seq1  GAATTCCTTAGGTATTGGGCAATCACTACAGAAAGCAAAGGTGGCCATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGGTATTGGGCAATCACTACAGAAAGCAAAGGTGGCCATGC  50

seq1  ATTGATGTATAAGAAAATATTCCAGAAAACAAGTTACGAAATGAACTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGTATAAGAAAATATTCCAGAAAACAAGTTACGAAATGAACTGAA  100

seq1  GCAAAGTACAGCTAAAGAGAGACCGGCCGGCTGGGGGCTGGCTGGAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTACAGCTAAAGAGAGACCGGCCGGCTGGGGGCTGGCTGGAGAAG  150

seq1  CATTCCTTCCGCCATATTTTGTCTTCCTTGATCATTTGTAAGCACTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTCCGCCATATTTTGTCTTCCTTGATCATTTGTAAGCACTTTCT  200

seq1  TGTTCAGTCTCCTGCTGCATTGGCCCCACATTACACTATTATAATATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGTCTCCTGCTGCATTGGCCCCACATTACACTATTATAATATTTA  250

seq1  TAAGAAGTTTTGGACGTCTCCATTGGACCAGTTAGCATGCTTGTAAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGTTTTGGACGTCTCCATTGGACCAGTTAGCATGCTTGTAAGTAT  300

seq1  GACACAGCAACAAGCTTCTGGGGACGTGACAATCTAACTAATGTCCTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGCAACAAGCTTCTGGGGACGTGACAATCTAACTAATGTCCTTGC  350

seq1  TCTTTCTCTCATTCCCTTCACAGAGACTGTAACTGCTTCTTTTGTGAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTCATTCCCTTCACAGAGACTGTAACTGCTTCTTTTGTGAGTA  400

seq1  CTCCCTGGTCACCTCCCCATTCTAGCCTTTGAATTTGGTCCTCTCTACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGGTCACCTCCCCATTCTAGCCTTTGAATTTGGTCCTCTCTACTG  450

seq1  AAATTTCTCTCCCTGTTACCCCCAACAATCAATACTTCTACACCTTCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTCTCCCTGTTACCCCCAACAATCAATACTTCTACACCTTCACC  500

seq1  TTCATCCTTCTTCTAGAAAGATCTTTCATTACTAAAGAAAACATCTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTTCTTCTAGAAAGATCTTTCATTACTAAAGAAAACATCTTCAA  550

seq1  ATTTCCCTCTGTAACTGAGCAGGACAGTAGACATATCCTATGACCTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCTCTGTAACTGAGCAGGACAGTAGACATATCCTATGACCTCTGA  600

seq1  ATGACTGTTTCTTTTCAAGGTTTGTGTGTGTCCCTTCTTCTTCTCATGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTTTCTTTTCAAGGTTTGTGTGTGTCCCTTCTTCTTCTCATGAT  650

seq1  GGAAGTGGGCATCTCCAGCTGTCGTCCCTTGGGCATCTGTCTTGTTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGGGCATCTCCAGCTGTCGTCCCTTGGGCATCTGTCTTGTTTTAT  700

seq1  TCCTTCCCTTGATGAACGAATGTGTTACTCATCAAATGCATCTTCCATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCTTGATGAACGAATGTGTTACTCATCAAATGCATCTTCCATTC  750

seq1  TCTGCTGTTTTCTAGAGTGGTAAAAATGCCTAAGAACATTTAAATATGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGTTTTCTAGAGTGGTAAAAATGCCTAAGAACATTTAAATATGAT  800

seq1  GAAATCAACAATTCCTTGACCTTCTTGCTTGATGACTAAGATCTGACTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAACAATTCCTTGACCTTCTTGCTTGATGACTAAGATCTGACTTC  850

seq1  CTCCTACAGGCTTCTGATAATATTAATATATGGTTGGAACCATGGGATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACAGGCTTCTGATAATATTAATATATGGTTGGAACCATGGGATTA  900

seq1  CTTTGTTCTTGCCACTGTAAATTTAGTGATCTGGCTCCTGACCAGATGTG  950
      |||||||||||||||||||||||||||||||||||| |||| ||||||||
seq2  CTTTGTTCTTGCCACTGTAAATTTAGTGATCTGGCT-CTGA-CAGATGTG  948

seq1  AGTCTGGCCACTCAACAAGACTGGCTCCAAATTGGAGTGTCTATACCATT  1000
      ||||||||| ||||   ||||||||||| |||||||||||||||| ||||
seq2  AGTCTGGCCCCTCA--CAGACTGGCTCC-AATTGGAGTGTCTATA-CATT  994

seq1  CATTGTTTTTCTTTCCTTCTCTGTGTTTTAATCCTTTTAAA  1041
      || ||||||||||||||| |||||| |||||||||||||||
seq2  CA-TGTTTTTCTTTCCTT-TCTGTG-TTTAATCCTTTTAAA  1032

seq1: chr14_51380918_51381264
seq2: B6Ng01-057D09.g_72_352 (reverse)

seq1  AGAGCCTCGAAGATATGGGTACAGGGGAAAGCGTCAAAGATATGGGTACA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGGAAAAGCCTCAAAGATATGGGTACAGGGGAAAAATTCCTGAATAGAAC  100
          | |||||| |||||||||| |||||||||| ||||||||| |||||
seq2  ----AGAGCCTCGAAGATATGGGCACAGGGGAAATATTCCTGAACAGAAC  46

seq1  AGCAATGGCTTGTGCTGTAAGATCAAGAATCGATAAATGGGACCTCATAA  150
      |||||||||||||||||||||||||||||||   ||||||||| ||||||
seq2  AGCAATGGCTTGTGCTGTAAGATCAAGAATCATCAAATGGGACTTCATAA  96

seq1  AATTGCAAAGCTTCTGCAAAGCAAAAGACACCGTCAATAAGACAAAAAGG  200
      ||           ||  || ||||||||||||||||||||||||||| ||
seq2  AA-----------CTATAAGGCAAAAGACACCGTCAATAAGACAAAACGG  135

seq1  CCACCAACAGATTGGGAAAGGATCTTTACCTATCCCAAATCGGATAGGGG  250
      | ||||||||||| ||||| |||||||||| |||  ||||| ||||||||
seq2  CAACCAACAGATTAGGAAAAGATCTTTACCAATCTTAAATCTGATAGGGG  185

seq1  ACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAAT  300
       ||||||||||||||||||||||||||| ||||||||||| |||||||| 
seq2  GCTAATATCCAATATATATAAAGAACTCGAGAAGGTGGACGCCAGAAAAC  235

seq1  CAAATAACCCCATTAAAAAATGGGGCTCAGAGCTGAACAAAGAATTC  347
      |||||||||| |||||||||| |||  ||||||| || |||||||||
seq2  CAAATAACCCTATTAAAAAAT-GGGTACAGAGCTAAATAAAGAATTC  281