BAC Information

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BAC

Clone NameB6Ng01-058M02
Chromosome14 (Build37)
Map Location 65,603,221 - 65,794,173
singlet/doubletdoublet
Overlap geneD14Ertd231e, Extl3
Upstream gene4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra, Kif13b, Hmbox1, LOC100043657
Downstream geneFzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058M02.bB6Ng01-058M02.g
ACCDH880247DH880248
length1,1411,081
definitionDH880247|Mus musculus domesticus DNA, BAC clone: B6Ng01-058M02, 5' end.DH880248|Mus musculus domesticus DNA, BAC clone: B6Ng01-058M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,793,021 - 65,794,173)(65,603,221 - 65,604,176)
sequence
gaattctgccctctctcccatcccgcttcggtttggtttcctgaggttta
cctctagtcacttagttctcagtccataaaccccaacacttggactgctc
cgatccctcaccctagccatctcctcagcaaaagaaacgacagacgcagc
tgcagcatccatgtaaaagtctaagagacccaagactaacaaagtcctta
tgccgggagtccaggtacaggagctatgtccagtgacccaacaacagagg
tgcggaccttctgctcctgaactaacttcaggaacagaagagagttgagg
cggttcagatagcgcataggaatcctgagggatagagatgggctaagaaa
ggggagggacttccgggtcttccctgggactggcagtagtaaccaggaac
taggttgctaccacttttcgcggccttctcgctctagtcacggctgcagg
taggtatctttagcattggaataaggagtagagaagctaggtcaagttca
cagtatatgaaaaaattcttgattgtcaacgtgtctgcgtgtggaattga
gtagatcctggcctggtggttaagacagacgcaggctgaagacagagaag
ccacacattttcatcgctgtcccgtcacccattggatatctgcaagttca
atgaagagttagtgttctcagcaaaggcagccttgaggattcgggaaagt
aacacaggcaaacatgatcataacccacacgtcagatgtggcctcgcagc
caagccaggggagaccaaggattgccgaagcagtgtaacaaagtcagctg
tgagccagtaaactagagggtgtgttcacactcttcatagtgagaggcca
aatcaaactccattttagagaacctgacctaagtttaaactcagtaaact
aacaggccggtagctagcattagtttccaagttgccgccaacagagccag
agcctagctccagtcttctagctaactcccagcagaccaacatctccagg
ttatctccccacagatctgcacctcaagttgcaagcccacccccgcctaa
cgacacatccggagagaaacagaaattaagtttatgaaattgatttccag
ccatggtgggctctcatatcctaaacacacacaacacacac
gaattcttacctgccctcacctgtgctgcctcatgtgcctgcgctgcagt
caggtccccagcacacagcatcatgttctgcagtgcccgtgcacactgcc
tgtatcacctccaccccagatggctgcacgtcatgaactgcaatcctttg
actatacatataggatttttcattcttatgaaaacataatggttaaatta
cagagaacaaagacttaatattttcctgccacacttagggacaattatga
gattcgtacattagtgaagttagtaaatctgggtgtatctttagattgta
ttttgttagaatatttgattttaaaaattgctatttccagccatacagtg
gtgacacataccgttagtcccagcacttaggaggcagagacaggcagatc
tctgtgagttcaaaaccagcctggtctacagagagaattctaggaagtca
gggctgttacacagagaaacaagtagagtggctcagaggataaaggtact
tgctaccaaagctgatgacctgggtttgatctcaagggcccgcctggtgg
aaagaaagagcccactcctgaaagttacactttgaccacatgaatgccat
gatgcatatgcaacctcctggcatgcacacacacacagaataaacacagt
tacaattttacattgctgtttgagttcctgggttaagtttcataaactgt
tggatgaattctggcttggagtgaggatagaatgcccaacaatttctgaa
atggccctgtttttgtcgtcgttaaatcatacattcatgcccagcgtcat
tctcaacattgatgattacaagatcaaatgttggtgaactcagaaaaaat
gtggaaggtatctgcttcctacagagtcagatatttaactaagacaaata
agcatagccatctcattagtaggcaggctttctctgatcttagtagatgg
tagatatatggatgccaaagggttgttctttatgattattagtaatgtcg
gttctgtctaatttcaaaaattgtttactttattggtgtgtgtgtatggt
atgtgtctctggggccgacatgagtttcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_65793021_65794173
seq2: B6Ng01-058M02.b_45_1185 (reverse)

seq1  GTGTGTGTGTGTGTGTGTTTAAGTATCTAATTGGAGAG-CCACCAT-GCT  48
      |||||||| |||||||||||| |      ||  ||||| ||||||| |||
seq2  GTGTGTGT-TGTGTGTGTTTAGG------ATATGAGAGCCCACCATGGCT  43

seq1  GGAAATC-ATATCATAAACTTAATTTCTGTTTCTCTCCGAATTGGTGGTC  97
      ||||||| || |||||||||||||||||||||||||||| ||  || |||
seq2  GGAAATCAATTTCATAAACTTAATTTCTGTTTCTCTCCGGAT--GT-GTC  90

seq1  GTTAGGCGGGGGTGGGCTTGCAACTTGGAGGTGCAGATCTGTTGGGGGAG  147
      |||||||||||||||||||||||||| |||||||||||||||  ||||||
seq2  GTTAGGCGGGGGTGGGCTTGCAACTT-GAGGTGCAGATCTGT--GGGGAG  137

seq1  ATAACCTGGAGATGTTGGTCTTGCTGGGAGTTAGCCTAG-AGACTGGAGC  196
      |||||||||||||||||||| ||||||||||||| |||| ||||||||||
seq2  ATAACCTGGAGATGTTGGTC-TGCTGGGAGTTAG-CTAGAAGACTGGAGC  185

seq1  TAGGCTCTGGCTCTGTTGGCGGCAACTTGGAAACTAATGCTAGCTACCGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCTGGCTCTGTTGGCGGCAACTTGGAAACTAATGCTAGCTACCGG  235

seq1  CCTGTTAGTTTACCTGAGTTTAAACTTAGGTCAGGTTCTCTAAAATGGAG  296
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCTGTTAGTTTA-CTGAGTTTAAACTTAGGTCAGGTTCTCTAAAATGGAG  284

seq1  TTTGATTTGGCCTCTCACTATGAAGAGTGTGAACACACCCTCTAGTTTAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTGGCCTCTCACTATGAAGAGTGTGAACACACCCTCTAGTTTAC  334

seq1  TGGCTCACAGCTGACTTTGTTACACTGCTTCGGCAATCCTTGGTCTCCCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCACAGCTGACTTTGTTACACTGCTTCGGCAATCCTTGGTCTCCCC  384

seq1  TGGCTTGGCTGCGAGGCCACATCTGACGTGTGGGTTATGATCATGTTTGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGGCTGCGAGGCCACATCTGACGTGTGGGTTATGATCATGTTTGC  434

seq1  CTGTGTTACTTTCCCGAATCCTCAAGGCTGCCTTTGCTGAGAACACTAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTACTTTCCCGAATCCTCAAGGCTGCCTTTGCTGAGAACACTAAC  484

seq1  TCTTCATTGAACTTGCAGATATCCAATGGGTGACGGGACAGCGATGAAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTGAACTTGCAGATATCCAATGGGTGACGGGACAGCGATGAAAA  534

seq1  TGTGTGGCTTCTCTGTCTTCAGCCTGCGTCTGTCTTAACCACCAGGCCAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCTTCTCTGTCTTCAGCCTGCGTCTGTCTTAACCACCAGGCCAG  584

seq1  GATCTACTCAATTCCACACGCAGACACGTTGACAATCAAGAATTTTTTCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTACTCAATTCCACACGCAGACACGTTGACAATCAAGAATTTTTTCA  634

seq1  TATACTGTGAACTTGACCTAGCTTCTCTACTCCTTATTCCAATGCTAAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGTGAACTTGACCTAGCTTCTCTACTCCTTATTCCAATGCTAAAG  684

seq1  ATACCTACCTGCAGCCGTGACTAGAGCGAGAAGGCCGCGAAAAGTGGTAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTACCTGCAGCCGTGACTAGAGCGAGAAGGCCGCGAAAAGTGGTAG  734

seq1  CAACCTAGTTCCTGGTTACTACTGCCAGTCCCAGGGAAGACCCGGAAGTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTAGTTCCTGGTTACTACTGCCAGTCCCAGGGAAGACCCGGAAGTC  784

seq1  CCTCCCCTTTCTTAGCCCATCTCTATCCCTCAGGATTCCTATGCGCTATC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTTTCTTAGCCCATCTCTATCCCTCAGGATTCCTATGCGCTATC  834

seq1  TGAACCGCCTCAACTCTCTTCTGTTCCTGAAGTTAGTTCAGGAGCAGAAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCGCCTCAACTCTCTTCTGTTCCTGAAGTTAGTTCAGGAGCAGAAG  884

seq1  GTCCGCACCTCTGTTGTTGGGTCACTGGACATAGCTCCTGTACCTGGACT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGCACCTCTGTTGTTGGGTCACTGGACATAGCTCCTGTACCTGGACT  934

seq1  CCCGGCATAAGGACTTTGTTAGTCTTGGGTCTCTTAGACTTTTACATGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCATAAGGACTTTGTTAGTCTTGGGTCTCTTAGACTTTTACATGGA  984

seq1  TGCTGCAGCTGCGTCTGTCGTTTCTTTTGCTGAGGAGATGGCTAGGGTGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAGCTGCGTCTGTCGTTTCTTTTGCTGAGGAGATGGCTAGGGTGA  1034

seq1  GGGATCGGAGCAGTCCAAGTGTTGGGGTTTATGGACTGAGAACTAAGTGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCGGAGCAGTCCAAGTGTTGGGGTTTATGGACTGAGAACTAAGTGA  1084

seq1  CTAGAGGTAAACCTCAGGAAACCAAACCGAAGCGGGATGGGAGAGAGGGC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGTAAACCTCAGGAAACCAAACCGAAGCGGGATGGGAGAGAGGGC  1134

seq1  AGAATTC  1153
      |||||||
seq2  AGAATTC  1141

seq1: chr14_65603221_65604176
seq2: B6Ng01-058M02.g_208_1150

seq1  TGCAATCCTTTGACTATACATATAGGATTTTTCATTCTTATGAAAACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCCTTTGACTATACATATAGGATTTTTCATTCTTATGAAAACATA  50

seq1  ATGGTTAAATTACAGAGAACAAAGACTTAATATTTTCCTGCCACACTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAAATTACAGAGAACAAAGACTTAATATTTTCCTGCCACACTTAG  100

seq1  GGACAATTATGAGATTCGTACATTAGTGAAGTTAGTAAATCTGGGTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATTATGAGATTCGTACATTAGTGAAGTTAGTAAATCTGGGTGTAT  150

seq1  CTTTAGATTGTATTTTGTTAGAATATTTGATTTTAAAAATTGCTATTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGATTGTATTTTGTTAGAATATTTGATTTTAAAAATTGCTATTTCC  200

seq1  AGCCATACAGTGGTGACACATACCGTTAGTCCCAGCACTTAGGAGGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATACAGTGGTGACACATACCGTTAGTCCCAGCACTTAGGAGGCAGA  250

seq1  GACAGGCAGATCTCTGTGAGTTCAAAACCAGCCTGGTCTACAGAGAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCAGATCTCTGTGAGTTCAAAACCAGCCTGGTCTACAGAGAGAAT  300

seq1  TCTAGGAAGTCAGGGCTGTTACACAGAGAAACAAGTAGAGTGGCTCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAAGTCAGGGCTGTTACACAGAGAAACAAGTAGAGTGGCTCAGAG  350

seq1  GATAAAGGTACTTGCTACCAAAGCTGATGACCTGGGTTTGATCTCAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGGTACTTGCTACCAAAGCTGATGACCTGGGTTTGATCTCAAGGG  400

seq1  CCCGCCTGGTGGAAAGAAAGAGCCCACTCCTGAAAGTTACACTTTGACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCTGGTGGAAAGAAAGAGCCCACTCCTGAAAGTTACACTTTGACCA  450

seq1  CATGAATGCCATGATGCATATGCAACCTCCTGGCATGCACACACACACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATGCCATGATGCATATGCAACCTCCTGGCATGCACACACACACAG  500

seq1  AATAAACACAGTTACAATTTTACATTGCTGTTTGAGTTCCTGGGTTAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACACAGTTACAATTTTACATTGCTGTTTGAGTTCCTGGGTTAAGT  550

seq1  TTCATAAACTGTTGGATGAATTCTGGCTTGGAGTGAGGATAGAATGCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAACTGTTGGATGAATTCTGGCTTGGAGTGAGGATAGAATGCCCA  600

seq1  ACAATTTCTGAAATGGCCCTGTTTTTGTCGTCGTTAAATCATACATTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTCTGAAATGGCCCTGTTTTTGTCGTCGTTAAATCATACATTCAT  650

seq1  GCCCAGCGTCATTCTCAACATTGATGATTACAAGATCAAAATGTTGGTGA  700
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCCCAGCGTCATTCTCAACATTGATGATTACAAGATC-AAATGTTGGTGA  699

seq1  ACTCAGAAAAAAATGTGGAAGGTATCTGCTTCCTACAGAGTCAGATATTT  750
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAG-AAAAAATGTGGAAGGTATCTGCTTCCTACAGAGTCAGATATTT  748

seq1  AACTAAGACAAATAAGCATAGCCATCTCATTAGTAGGCAGGCTTTCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGACAAATAAGCATAGCCATCTCATTAGTAGGCAGGCTTTCTCTG  798

seq1  ATCTTTAGTAGATGGTAAGATTATATGGATGCCAAAGGGTTGTTTCTTTA  850
      ||| |||||||||||| ||| ||||||||||||||||||||| |||||||
seq2  ATC-TTAGTAGATGGT-AGA-TATATGGATGCCAAAGGGTTG-TTCTTTA  844

seq1  TGATTATTAGTAAATGTTCGGTTTCTGTTCTTAATTTCAAAGATTTGTTT  900
      ||||||||||| |||| |||| ||||||   |||||||||| | ||||||
seq2  TGATTATTAGT-AATG-TCGG-TTCTGT--CTAATTTCAAA-AATTGTTT  888

seq1  ACTTTATTGTGTGT-TGTGTAT-GTATGTGTCTCTGTGTGCCGACATGAG  948
      ||||||||| |||| ||||||| ||||||||||||| | |||||||||||
seq2  ACTTTATTG-GTGTGTGTGTATGGTATGTGTCTCTG-GGGCCGACATGAG  936

seq1  TTTTCATG  956
       |||||||
seq2  -TTTCATG  943