BAC Information

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BAC

Clone NameB6Ng01-058M10
Chromosome14 (Build37)
Map Location 109,882,075 - 110,010,972
singlet/doubletdoublet
Overlap geneLOC640892
Upstream geneEG668761, Slitrk1
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058M10.bB6Ng01-058M10.g
ACCDH880261DH880262
length7651,094
definitionDH880261|Mus musculus domesticus DNA, BAC clone: B6Ng01-058M10, 5' end.DH880262|Mus musculus domesticus DNA, BAC clone: B6Ng01-058M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,882,075 - 109,882,840)(110,009,862 - 110,010,972)
sequence
gaattctatgtcacaaattagatatatgatttaaaaggtaaatcttataa
attttcgaataattggggtaggagagaagctggaaaaatgatgctgacgt
tgagatgaaaagaaaaagactactagcaactgagaaaattttagtaagac
ttagcttcacaaatataaattaaaagtgataatttatatcatctccgaat
atccaagccaaaatactgaaaagaatgagaactgagatgacagaggtacc
aaaccaacaacaaattcaagtcaggtggaacacatgcaaacatttttcta
tttcacagcacatattaaaatgagttttaattaaactgatacataaaaga
aaatgtcaaccataagctttaatacacattcatttaaatataagcctgca
tgaatagtgtggaaaataaattgttatattcgagttttctagtttactta
actaactagatatatcaagcattgatgacaacacttcgctgagttcaatg
attacatatctattgctaatactattattattactattattattaatgag
accaggttacacatatttatgtatctcactttagctctcttactatgtat
ccgagaatgatattaagcttcctatcctttgtcatgtcctgaatcctgcg
gttgcttgtgtatggtcggtgtatgcggaactggtgtacattagggaacc
actcttccaatagagccaaatctctagaatgtcagaatttgtatgtgtgt
gtgtgtgtgtgtgtg
gaattcaaacagattcacaagtatatgagattagagaagaaaggtttgga
ctcctggcaaagattataaataaacttacaatgctataatacatttgaac
tagaataattttgatctaattaaataaagagtagaatatggccaagttaa
gctaccaaggagaaaaatgatttaaaatgaagtagaatcatttctgacca
tagtataatctaaataggttctcagtccttatacttttatcacttaatat
aaacacaattatagcttttttattatgaagaattattcagataattcatt
cacaaagcaatgtttaattatttcacattagtgattagaattatttgaag
ggtagtatgttttttaaaataaattattagtctgtgaatactaaaatatt
ttatgaaatttaattatatatatttaaatgcctatttaggaaggaaggcg
taaaaatgaaacaaagcatttcatgcctggagtccttatggtatgcaaaa
gacaaaatgcaatccatgacctctgtaacatcaagtcaaaaagctaaagc
cattttgtcatttcttatttcagtttctttatctttaattgatctgcaca
atgctgagacagcagaatattgtgaaacttctattagtcacgaaaacatt
tggcagtgaatacaaatcctgtggaatttccattttgctaatgtgccttg
gctctggaaatactcctaacagcgccaatttctattctgtatcttatgtc
tttggtttcacctcctaacatttgatcaaaataattcctttaaataaaga
ggcattgacattagctttgaacacctccattttttaacagtgtgtttggt
atttatttaatttgaaactaaatatgaccattttgagcttacacagctta
cagcaatgtgaatacaactacatttaacatttattcattacattatctgt
cacgtatctatagttacatagtacaaatagaaagctttttttgttgatga
agcacaatcagtaatatgaacaacatgattagtttggagattccataata
gtttcttcaattgtttctggtcatacactatttaagggcagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109882075_109882840
seq2: B6Ng01-058M10.b_45_809

seq1  GAATTCTATATCACAAATTAGATATATGATTTAAAAGGTAAATCTTATAA  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTCACAAATTAGATATATGATTTAAAAGGTAAATCTTATAA  50

seq1  ATTTTAGAATAATTGGGGTA-CAGAAAATCAGAGGAAAAATGATGCTGAC  99
      ||||| ||||||||||||||  ||| || |   |||||||||||||||||
seq2  ATTTTCGAATAATTGGGGTAGGAGAGAAGC--TGGAAAAATGATGCTGAC  98

seq1  GTTGAAATGAAAAGAAAAAGACTACTAGCAACTGAGAAAATTTTAGTAAG  149
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGATGAAAAGAAAAAGACTACTAGCAACTGAGAAAATTTTAGTAAG  148

seq1  ACTTAGCTTCACAAATATAAATTAAAAGTGATAATTTATATCATCTCCGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCTTCACAAATATAAATTAAAAGTGATAATTTATATCATCTCCGA  198

seq1  ATATCCAAGCCAAAATACTGAAAAGAATGAGAACTGAGATGACAGAGGTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAAGCCAAAATACTGAAAAGAATGAGAACTGAGATGACAGAGGTA  248

seq1  CCAAACCAACAACAAATTCAAGTCAGGTGGAACACATGCAAACATTTTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCAACAACAAATTCAAGTCAGGTGGAACACATGCAAACATTTTTC  298

seq1  TATTTCACAGCACATATTAAAATGAGTTTTAATTAAACTGATACATAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCACAGCACATATTAAAATGAGTTTTAATTAAACTGATACATAAAA  348

seq1  GAAAATGTCAACCATAAGCTTTAATACACATTCATTTAAATATAAGCCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTCAACCATAAGCTTTAATACACATTCATTTAAATATAAGCCTG  398

seq1  CATGAATAGTGTGGAAAATAAATTGTTATATTCGAGTTTTCTAGTTTACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATAGTGTGGAAAATAAATTGTTATATTCGAGTTTTCTAGTTTACT  448

seq1  TAACTAACTAGATATATCAAGCATTGATGACAACACTTCGCTGAGTTCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAACTAGATATATCAAGCATTGATGACAACACTTCGCTGAGTTCAA  498

seq1  TGATTACATATCTATTGCTAATACTATTATTATTACTATTATTATTAATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACATATCTATTGCTAATACTATTATTATTACTATTATTATTAATG  548

seq1  AGACCAGGTTACACATATTTATGTATCTCACTTTAGCTCTCTTACTATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGTTACACATATTTATGTATCTCACTTTAGCTCTCTTACTATGT  598

seq1  ATCCGAGAATGATATTAAGCTTCCTATCCTTTGTCATGTCCTGAATCCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGAGAATGATATTAAGCTTCCTATCCTTTGTCATGTCCTGAATCCTG  648

seq1  GGGTTGCTTGTGTATGGTCGGTGTATGCGGAACTGGTGTACATTAGGGAA  699
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGCTTGTGTATGGTCGGTGTATGCGGAACTGGTGTACATTAGGGAA  698

seq1  CCACTCTTCCAATAGAGCAAAATCTCTAGAATGTCAGAATTTGTATGTGT  749
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCACTCTTCCAATAGAGCCAAATCTCTAGAATGTCAGAATTTGTATGTGT  748

seq1  GTGTGTGTGTGTGTGTG  766
      |||||||||||||||||
seq2  GTGTGTGTGTGTGTGTG  765

seq1: chr14_110009862_110010972
seq2: B6Ng01-058M10.g_66_1159 (reverse)

seq1  ATGCTGCACTTTAAAATAGTGATTTGACCAGAACACATGTGAAGAGAAAA  50
      ||||||| |||  |||||||| | ||||||||| |||  |||||   |||
seq2  ATGCTGCCCTT--AAATAGTG-TATGACCAGAA-ACAATTGAAG---AAA  43

seq1  TTATTATGGAATTCTACAATACTAATCATTGTTTGTATCATATTACTGAT  100
       |||||||||| ||| ||| |||||||||   |||| |||||||||||| 
seq2  CTATTATGGAA-TCTCCAA-ACTAATCAT--GTTGT-TCATATTACTGA-  87

seq1  GTTGGTGCTTCATCAAACAAAATAAGCTTTCTAATTTGTACTATGTAACT  150
        | |||||||||| ||||||| ||||||||| |||||||||||||||||
seq2  --TTGTGCTTCATC-AACAAAAAAAGCTTTCT-ATTTGTACTATGTAACT  133

seq1  ATAGATACGTGACAGATAATGTAATGAATAAATGTTAAATGTAGTTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATACGTGACAGATAATGTAATGAATAAATGTTAAATGTAGTTGTAT  183

seq1  TCACATTGCTGTAAGCTGTGTAAGCTCAAAATGGTCATATTTAGTTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTGCTGTAAGCTGTGTAAGCTCAAAATGGTCATATTTAGTTTCAA  233

seq1  ATTAAATAAATACCAAACACACTGTTAAAAAATGGAGGTGTTCAAAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAAATACCAAACACACTGTTAAAAAATGGAGGTGTTCAAAGCTA  283

seq1  ATGTCAATGCCTCTTTATTTAAAGGAATTATTTTGATCAAATGTTAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAATGCCTCTTTATTTAAAGGAATTATTTTGATCAAATGTTAGGAG  333

seq1  GTGAAACCAAAGACATAAGATACAGAATAGAAATTGGCGCTGTTAGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACCAAAGACATAAGATACAGAATAGAAATTGGCGCTGTTAGGAGT  383

seq1  ATTTCCAGAGCCAAGGCACATTAGCAAAATGGAAATTCCACAGGATTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGAGCCAAGGCACATTAGCAAAATGGAAATTCCACAGGATTTGT  433

seq1  ATTCACTGCCAAATGTTTTCGTGACTAATAGAAGTTTCACAATATTCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTGCCAAATGTTTTCGTGACTAATAGAAGTTTCACAATATTCTGC  483

seq1  TGTCTCAGCATTGTGCAGATCAATTAAAGATAAAGAAACTGAAATAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGCATTGTGCAGATCAATTAAAGATAAAGAAACTGAAATAAGAA  533

seq1  ATGACAAAATGGCTTTAGCTTTTTGACTTGATGTTACAGAGGTCATGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAAATGGCTTTAGCTTTTTGACTTGATGTTACAGAGGTCATGGAT  583

seq1  TGCATTTTGTCTTTTGCATACCATAAGGACTCCAGGCATGAAATGCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTGTCTTTTGCATACCATAAGGACTCCAGGCATGAAATGCTTTG  633

seq1  TTTCATTTTTACGCCTTCCTTCCTAAATAGGCATTTAAATATATATAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTTACGCCTTCCTTCCTAAATAGGCATTTAAATATATATAATT  683

seq1  AAATTTCATAAAATATTTTAGTATTCACAGACTAATAATCTATTTTAAAA  750
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAATTTCATAAAATATTTTAGTATTCACAGACTAATAATTTATTTTAAAA  733

seq1  AACATACTACCCTTCAAATAATTCTAATCACTAATGTGAAATAATTAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACTACCCTTCAAATAATTCTAATCACTAATGTGAAATAATTAAAC  783

seq1  ATTGCTTTGTGAATGAATTATCTGAATAATTCTTCATAATAAAAAAGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTGTGAATGAATTATCTGAATAATTCTTCATAATAAAAAAGCTA  833

seq1  TAATTGTGTTTATATTAAGTGATAAAAGTATAAGGACTGAGAACCTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTGTTTATATTAAGTGATAAAAGTATAAGGACTGAGAACCTATTT  883

seq1  AGATTATACTATTGTCAGAAATGATTCTACTTAATTTTAAATCATTTTTC  950
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  AGATTATACTATGGTCAGAAATGATTCTACTTCATTTTAAATCATTTTTC  933

seq1  TCCTTGGTAGCTTAACTTGGCCATATTCTACTCTTTATTTAATTAGATCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGTAGCTTAACTTGGCCATATTCTACTCTTTATTTAATTAGATCA  983

seq1  AAATTATTCTAGTTCAAATGTATTATAGCATTGTAAGTTTATTTATAATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTCTAGTTCAAATGTATTATAGCATTGTAAGTTTATTTATAATC  1033

seq1  TTTGCCAGGAGTCCAAACCTTTCTTCTCTAATCTCATATATTTGTGAATC  1100
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTGCCAGGAGTCCAAACCTTTCTTCTCTAATCTCATATACTTGTGAATC  1083

seq1  TGTTTGAATTC  1111
      |||||||||||
seq2  TGTTTGAATTC  1094