BAC Information

Click to search

BAC

Clone NameB6Ng01-059O17
Chromosome14 (Build37)3 (Build37)
Map Location 117,649,514 - 117,649,644153,557,393 - 153,558,042
singlet/doubletsingletsinglet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059O17.bB6Ng01-059O17.g
ACCDH881057DH881058
length233650
definitionDH881057|Mus musculus domesticus DNA, BAC clone: B6Ng01-059O17, 5' end.DH881058|Mus musculus domesticus DNA, BAC clone: B6Ng01-059O17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(117,649,514 - 117,649,644)(153,557,393 - 153,558,042)
sequence
ttagtaaccaggaagtggaagcctttgataggattagaaggattaagagg
tgtggccttgttggagaaagtgtgtcactaagggtgaggtttcaaaaacc
caaaccaggaccaggctccaatctctctctctctctctctctctctctct
ctctctctctctctctgtctgtctctctctctctctctgtctctctctct
ctctgtctctctctgtctctctctgtctctctg
gaattctcagctcctcctgtaccatgcctgcctgggggctgccttgttct
ggccttgatgataactgcttgaacgtctgaacctgtaatctagccccaat
taaattttggcgttataagagttgccttggtcacagcgtctgttcacaga
agtaaaaccctaactaagacacactatacaaaacagttctattaactgtt
attgtaattggtgttcaagggcacaaaacataacaaaatatgtaaataat
cttggcattaaaaaatttcctggggttggggatttagctcagtggtagag
tgcttgcctagcaagcccaaggccctgggttcggtcctcagctccggaaa
aagaaaaaaaaaaaaagtccaaaaaaaaaaatttcctagttgggtagtgg
tggtgcatgcctttaatcccagcccttgggaggcagaggcaggtggattt
ctgagttcaaggtcagcctggtctacagagtgaattccaagacagccagg
gctacacagagaaaccctgtctcggcccctccctcatcccaaaattccta
gtaacaataaaaacatatgaaaaattttccttataatggcaggctatcca
agtaacttacctaggccttaacgttttacctaggccttatattccatcta

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_117649514_117649644
seq2: B6Ng01-059O17.b_175_274 (reverse)

seq1  GAGAGACAGAGAGAGACACACACAGAGACTTCACACATGCACAGAGAGAG  50
      |||||||||||||||||                           ||||||
seq2  GAGAGACAGAGAGAGAC---------------------------AGAGAG  23

seq1  AAAGAGAGACAGAGAGAGAGATTGAGACAGACAGACAGAGAGAGAGAGAG  100
      | |||||||||||||||||    |||| ||||||||||||||||||||||
seq2  AGAGAGAGACAGAGAGAGA----GAGAGAGACAGACAGAGAGAGAGAGAG  69

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  131
      |||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  100

seq1: chr3_153557393_153558042
seq2: B6Ng01-059O17.g_69_718

seq1  GAATTCTCAGCTCCTCCTGTACCATGCCTGCCTGGGGGCTGCCTTGTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTCCTCCTGTACCATGCCTGCCTGGGGGCTGCCTTGTTCT  50

seq1  GGCCTTGATGATAACTGCTTGAACGTCTGAACCTGTAATCTAGCCCCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGATGATAACTGCTTGAACGTCTGAACCTGTAATCTAGCCCCAAT  100

seq1  TAAATTTTGGCGTTATAAGAGTTGCCTTGGTCACAGCGTCTGTTCACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTGGCGTTATAAGAGTTGCCTTGGTCACAGCGTCTGTTCACAGA  150

seq1  AGTAAAACCCTAACTAAGACACACTATACAAAACAGTTCTATTAACTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACCCTAACTAAGACACACTATACAAAACAGTTCTATTAACTGTT  200

seq1  ATTGTAATTGGTGTTCAAGGGCACAAAACATAACAAAATATGTAAATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAATTGGTGTTCAAGGGCACAAAACATAACAAAATATGTAAATAAT  250

seq1  CTTGGCATTAAAAAATTTCCTGGGGTTGGGGATTTAGCTCAGTGGTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCATTAAAAAATTTCCTGGGGTTGGGGATTTAGCTCAGTGGTAGAG  300

seq1  TGCTTGCCTAGCAAGCCCAAGGCCCTGGGTTCGGTCCTCAGCTCCGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCCTAGCAAGCCCAAGGCCCTGGGTTCGGTCCTCAGCTCCGGAAA  350

seq1  AAGAAAAAAAAAAAAAGTCCAAAAAAAAAAATTTCCTAGTTGGGTAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAAAAAAAGTCCAAAAAAAAAAATTTCCTAGTTGGGTAGTGG  400

seq1  TGGTGCATGCCTTTAATCCCAGCCCTTGGGAGGCAGAGGCAGGTGGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCATGCCTTTAATCCCAGCCCTTGGGAGGCAGAGGCAGGTGGATTT  450

seq1  CTGAGTTCAAGGTCAGCCTGGTCTACAGAGTGAATTCCAAGACAGCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCAAGGTCAGCCTGGTCTACAGAGTGAATTCCAAGACAGCCAGG  500

seq1  GCTACACAGAGAAACCCTGTCTCGGCCCCTCCCTCATCCCAAAATTCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACAGAGAAACCCTGTCTCGGCCCCTCCCTCATCCCAAAATTCCTA  550

seq1  GTAACAATAAAAACATATGAAAAAGTTTCCTTATAATGGCAGGCTATCCA  600
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTAACAATAAAAACATATGAAAAATTTTCCTTATAATGGCAGGCTATCCA  600

seq1  AGTAACTTACCTAGGCCTTAACGTTTTACCTAGGCCTTATATTCCATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTTACCTAGGCCTTAACGTTTTACCTAGGCCTTATATTCCATCTA  650