BAC Information

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BAC

Clone NameB6Ng01-060M06
Chromosome14 (Build37)
Map Location 17,224,144 - 17,403,920
singlet/doubletdoublet
Overlap geneTop2b, Rarb
Upstream geneLrrc3b, LOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1
Downstream geneTpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060M06.bB6Ng01-060M06.g
ACCDH881649DH881650
length1,140946
definitionDH881649|Mus musculus domesticus DNA, BAC clone: B6Ng01-060M06, 5' end.DH881650|Mus musculus domesticus DNA, BAC clone: B6Ng01-060M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,402,764 - 17,403,920)(17,224,144 - 17,225,067)
sequence
gaattccaaagccccaaaccaagtcatgggaggggcagtgccctgcatct
tcttaactgtaagctgttagtttggaccagattagcctctctggtttgaa
tcaactgtcaagtaggaacagaaagccctggcatgggatgtgtccttgtt
ttctcttactagataagtgactggagtgtcagcttctgctgggttggctg
gcatgaatgaggggtctccttctcattttggaccatccagaaccagcaaa
gaccgtcctggtttgatacttccattttgtctttgttttctgatgaatca
caagaatacaactatagtctttagatttcacacactttttcccccatcaa
cccattaagcagggtcatagctaaaatagaaagaaaatcttactgttttc
ttttatacatattaagcaaggccgttcactttcttccacagacgaaatac
atgataagtgatgaagactgtcaattctactcttaggagatttatcattc
tttaaattaaaaaagaattttgaagaaagaagtctggacagtttttaatt
aggaagttagtgtcagggaggaaaattggaaatggaaaacccctgagagt
ctaagcatgaaactccttttgacattgctcaggtttaacagcaaacactg
tggggcatttaaaacatgggttcttaacctgtgggtctcaacaccgacag
agcaaatgaccctttcacaggggttgcctaagaccatcagaaaacatttt
tatataattcataatagtagcaaaattacagttatgaagtagcaatgaaa
atggttttatggttggggatcaccccaacatgaggaactttattaaagga
ttgctgcattaggaggctaagaacactcatttagaagctcttgaagagac
tctccttcagagtgtgagctacatgtaagtgccaataaattcatccttaa
atggcatttagtgctttaaatgttctaatataaattcagctactatcatt
aatagattatttcaattatgggagttttgatgaaggttaatcagaaaccg
taggctggaaccttgccagaatatgatgttcaatgttgccctttcaaggc
tgggttatctcccgttctgagacctcaattcaagttccgt
gaattccatctctttactgaagtggcatgtcttttctactagactgtact
gtactaactaacaatagtgattctaagtgcctgttacaacatctgagatg
ttttgttttaaatttggatttatttttatatgcattaataaaatacacat
aaaatacagtcttgtgcctatgtgtgtatttgtacaccatggttgtgagc
ttttatatagtctgggaattgaacctgggctctctgtcctctgggaaagc
agaagtactccaaaccaatgaggaatctatctagctccatttgagctgtt
tctgatgataattatatttcgatttttaaaatttattttggtattcctaa
aagtattatggaacagtttgtgttgtgtatagtggcagacactggggtaa
atggactttgttattggccttatgttaatctctccaagtgtttaaagttt
gtttctttctagttttcattgtttgtttcttccagctccctggcagagat
ggtttgtgtcttgtgctctattggctgaaatttcctgttactattagagc
cttattagtctgggggtagcatgcaagagattctttagtatctgattaaa
tctcagtcttgaattgcacattgagcctattccatacagattggtttcag
agtgcacatgcacgtctttccatgagtagagacttttcatttgctcttaa
gtcttttttcttagctgtggtagctttccaccagtgttctacatagtctg
cttcttgagctccattgaactacagaataagacagactccttatttattt
ttataagagaatggaggctgggtggattgttcactgcctgctgctgtctt
ctagtcagcacatgacaaatgtatctctcttgatccatgtgaagcttgat
gtggtccctagacagacaacttctgcaatggagtcttttctcaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_17402764_17403920
seq2: B6Ng01-060M06.b_43_1182 (reverse)

seq1  ACGGAACATTTGAAATTGAGGTTTTCTAGAAACGTGGAGATAA-CCAGCC  49
      |||||||  ||| ||||||||   |||   |||| |||||||| ||||||
seq2  ACGGAAC--TTG-AATTGAGG---TCTCAGAACG-GGAGATAACCCAGCC  43

seq1  TTTGAAAGGCAACATTGGACATCAATATCTTGGCAAAGGTTTCCAGCCTA  99
      ||  || |||||||||| ||||| ||||  ||||||  | ||||||||||
seq2  TTGAAAGGGCAACATTGAACATC-ATATTCTGGCAA--GGTTCCAGCCTA  90

seq1  CGTTTTTCTGATTAACCTTCATCAAAAACTCCCATATCTGAAATAATCTA  149
      ||  ||||||||||||||||||| ||||||||||||  ||||||||||||
seq2  CG-GTTTCTGATTAACCTTCATC-AAAACTCCCATAATTGAAATAATCTA  138

seq1  TTTAATTGATAGTTAGCTGAATTTATATTAGAACATTTAAAGCACTAAAA  199
      ||  | |||||| ||||||||||||||||||||||||||||||||| |||
seq2  TT--AATGATAG-TAGCTGAATTTATATTAGAACATTTAAAGCACT-AAA  184

seq1  TGCCATTTAAGGATGAATTTATTGGCACTTACATGTAGCTCACACTCTGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTAAGGATGAATTTATTGGCACTTACATGTAGCTCACACTCTGA  234

seq1  AGGAGAGTCTCTTCAAGAGCTTCTAAATGAGTGTTTCTTAGCCTTCCTAA  299
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  AGGAGAGTCTCTTCAAGAGCTTCTAAATGAGTG-TTCTTAGCC-TCCTAA  282

seq1  TGCAGCAATCCTTTAATAAAGTTCCTCATGTTGGGGTGATCCCCAACCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAATCCTTTAATAAAGTTCCTCATGTTGGGGTGATCCCCAACCAT  332

seq1  AAAACCATTTTCATTGCTACTTCATAACTGTAATTTTGCTACTATTATGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATTTTCATTGCTACTTCATAACTGTAATTTTGCTACTATTATGA  382

seq1  ATTATATAAAAATGTTTTCTGATGGTCTTAGGCAACCCCTGTGAAAGGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATAAAAATGTTTTCTGATGGTCTTAGGCAACCCCTGTGAAAGGGT  432

seq1  CATTTGCTCTGTCGGTGTTGAGACCCACAGGTTAAGAACCCATGTTTTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTCTGTCGGTGTTGAGACCCACAGGTTAAGAACCCATGTTTTAA  482

seq1  ATGCCCCACAGTGTTTGCTGTTAAACCTGAGCAATGTCAAAAGGAGTTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCACAGTGTTTGCTGTTAAACCTGAGCAATGTCAAAAGGAGTTTC  532

seq1  ATGCTTAGACTCTCAGGGGTTTTCCATTTCCAATTTTCCTCCCTGACACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTAGACTCTCAGGGGTTTTCCATTTCCAATTTTCCTCCCTGACACT  582

seq1  AACTTCCTAATTAAAAACTGTCCAGACTTCTTTCTTCAAAATTCTTTTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTAATTAAAAACTGTCCAGACTTCTTTCTTCAAAATTCTTTTTT  632

seq1  AATTTAAAGAATGATAAATCTCCTAAGAGTAGAATTGACAGTCTTCATCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAGAATGATAAATCTCCTAAGAGTAGAATTGACAGTCTTCATCA  682

seq1  CTTATCATGTATTTCGTCTGTGGAAGAAAGTGAACGGCCTTGCTTAATAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCATGTATTTCGTCTGTGGAAGAAAGTGAACGGCCTTGCTTAATAT  732

seq1  GTATAAAAGAAAACAGTAAGATTTTCTTTCTATTTTAGCTATGACCCTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAAGAAAACAGTAAGATTTTCTTTCTATTTTAGCTATGACCCTGC  782

seq1  TTAATGGGTTGATGGGGGAAAAAGTGTGTGAAATCTAAAGACTATAGTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGGTTGATGGGGGAAAAAGTGTGTGAAATCTAAAGACTATAGTTG  832

seq1  TATTCTTGTGATTCATCAGAAAACAAAGACAAAATGGAAGTATCAAACCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTGTGATTCATCAGAAAACAAAGACAAAATGGAAGTATCAAACCA  882

seq1  GGACGGTCTTTGCTGGTTCTGGATGGTCCAAAATGAGAAGGAGACCCCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGGTCTTTGCTGGTTCTGGATGGTCCAAAATGAGAAGGAGACCCCTC  932

seq1  ATTCATGCCAGCCAACCCAGCAGAAGCTGACACTCCAGTCACTTATCTAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGCCAGCCAACCCAGCAGAAGCTGACACTCCAGTCACTTATCTAG  982

seq1  TAAGAGAAAACAAGGACACATCCCATGCCAGGGCTTTCTGTTCCTACTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAAAACAAGGACACATCCCATGCCAGGGCTTTCTGTTCCTACTTG  1032

seq1  ACAGTTGATTCAAACCAGAGAGGCTAATCTGGTCCAAACTAACAGCTTAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGATTCAAACCAGAGAGGCTAATCTGGTCCAAACTAACAGCTTAC  1082

seq1  AGTTAAGAAGATGCAGGGCACTGCCCCTCCCATGACTTGGTTTGGGGCTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGAAGATGCAGGGCACTGCCCCTCCCATGACTTGGTTTGGGGCTT  1132

seq1  TGGAATTC  1157
      ||||||||
seq2  TGGAATTC  1140

seq1: chr14_17224144_17225067
seq2: B6Ng01-060M06.g_66_988

seq1  GAATTCCATCTCTTTACTGAAGTGGCATGTCTTTTCTACTAGACTGTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTCTTTACTGAAGTGGCATGTCTTTTCTACTAGACTGTACT  50

seq1  GTACTAACTAACAATAGTGATTCTAAGTGCCTGTTACAACATCTGAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAACTAACAATAGTGATTCTAAGTGCCTGTTACAACATCTGAGATG  100

seq1  TTTTGTTTTAAATTTGGATTTATTTTTATATGCATTAATAAAATACACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTAAATTTGGATTTATTTTTATATGCATTAATAAAATACACAT  150

seq1  AAAATACAGTCTTGTGCCTATGTGTGTATTTGTACACCATGGTTGTGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAGTCTTGTGCCTATGTGTGTATTTGTACACCATGGTTGTGAGC  200

seq1  TTTTATATAGTCTGGGAATTGAACCTGGGCTCTCTGTCCTCTGGGAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATAGTCTGGGAATTGAACCTGGGCTCTCTGTCCTCTGGGAAAGC  250

seq1  AGAAGTACTCCAAACCAATGAGGAATCTATCTAGCTCCATTTGAGCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTACTCCAAACCAATGAGGAATCTATCTAGCTCCATTTGAGCTGTT  300

seq1  TCTGATGATAATTATATTTCGATTTTTAAAATTTATTTTGGTATTCCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGATAATTATATTTCGATTTTTAAAATTTATTTTGGTATTCCTAA  350

seq1  AAGTATTATGGAACAGTTTGTGTTGTGTATAGTGGCAGACACTGGGGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTATGGAACAGTTTGTGTTGTGTATAGTGGCAGACACTGGGGTAA  400

seq1  ATGGACTTTGTTATTGGCCTTATGTTAATCTCTCCAAGTGTTTAAAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTTTGTTATTGGCCTTATGTTAATCTCTCCAAGTGTTTAAAGTTT  450

seq1  GTTTCTTTCTAGTTTTCATTGTTTGTTTCTTCCAGCTCCCTGGCAGAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTCTAGTTTTCATTGTTTGTTTCTTCCAGCTCCCTGGCAGAGAT  500

seq1  GGTTTGTGTCTTGTGCTCTATTGGCTGAAATTTCCTGTTACTATTAGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTGTCTTGTGCTCTATTGGCTGAAATTTCCTGTTACTATTAGAGC  550

seq1  CTTATTAGTCTGGGGGTAGCATGCAAGAGATTCTTTAGTATCTGATTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAGTCTGGGGGTAGCATGCAAGAGATTCTTTAGTATCTGATTAAA  600

seq1  TCTCAGTCTTGAATTGCACATTGAGCCTATTCCATACAGATTGGTTTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTCTTGAATTGCACATTGAGCCTATTCCATACAGATTGGTTTCAG  650

seq1  AGTGCACATGCACGTCTTTCCATGAGTAGAGACTTTTCATTTGCTCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACATGCACGTCTTTCCATGAGTAGAGACTTTTCATTTGCTCTTAA  700

seq1  GTC-TTTTTCTTAGCTGTGGTAGCTTTCCACCAGTGTTCTACATAGTCTG  749
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTTCTTAGCTGTGGTAGCTTTCCACCAGTGTTCTACATAGTCTG  750

seq1  CTTCTTGAGCTCCACTGAACTACAGAATAAGACAGACTCCTTATTTCATT  799
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  CTTCTTGAGCTCCATTGAACTACAGAATAAGACAGACTCCTTATTT-ATT  799

seq1  TTTATAAGAGAATGGAGGCTGGGTGGATTGTTCACTGCCTGCTGCTGTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGAGAATGGAGGCTGGGTGGATTGTTCACTGCCTGCTGCTGTCT  849

seq1  TCTAGCCAGCACATGGCAAATGTATCTCTCTTGATCCATGTGAAAGCTTG  899
      ||||| ||||||||| |||||||||||||||||||||||||| |||||||
seq2  TCTAGTCAGCACATGACAAATGTATCTCTCTTGATCCATGTG-AAGCTTG  898

seq1  ATGTGGTCCCTAGACAGACAACTTC  924
      |||||||||||||||||||||||||
seq2  ATGTGGTCCCTAGACAGACAACTTC  923