BAC Information

Click to search

BAC

Clone NameB6Ng01-060O22
Chromosome14 (Build37)
Map Location 89,433,755 - 89,435,161
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060O22.bB6Ng01-060O22.g
ACCDH881761DH881762
length6241,118
definitionDH881761|Mus musculus domesticus DNA, BAC clone: B6Ng01-060O22, 5' end.DH881762|Mus musculus domesticus DNA, BAC clone: B6Ng01-060O22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtttctatgagtatgtgggctttcttttgtattatttttatta
aagaccagccttagtccctggttatctgatacaatgcatggggttatttc
agtctgccatatctgttaggacttattttgtgcacaattatatagtcagt
tttgcagaaggtaccatgaagtgctgagaagaaggtatattcttcttctt
ctttcttcttcttcttcttcttcttcttcttctttcttcttcttcttctt
cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttct
tcttattcttattattcttcttcttcttctcttttgttattattgttatt
ggtattaagattactaattagtctacattttataataataataatattaa
taatgttatttatattcactaaaaaccgatgtaggtgtagtactaatatt
atgattatgaagatgaggaatagtaagacagtagtgattgtttgatgata
ttttaaggtttcgaaatcgtagtagtcaactatgtatattatcattatca
tccacaacagctcagaaagatatgcgactgctgtgtaggtgtgatgttgt
tgacgtggtgtattatcacgacac

gaattcatcagcttgccccaatttaatgtgaaaagaggcatatgtataat
tttctgtgtttatgtgagcaaacaaacacaaggtcaaatatttaattaaa
ttgtataatgcacatattttcaaaaatatgaaacttgaagttaaattaaa
tgaaaactaatttcaaataaatatctgtaactgtaccaaaagaatgtgct
tctgaggcacaatgcagttctgaatgctaaacagaaaattaaatttctag
ttgaaaatattttgagtgactataattaaaatgttactccacattctatt
atttatttactattagtatcaattcaataaactattgctaaattttgtgt
ttgctaatataataccaaaataaataagtaaataaagcacaatttaggga
ttatatcaggtaaaagcatgagtattaacacaaaaactgtccttttcaga
agctgaaaataaacaatgtaattgaattaatctttcacactgaagcagac
atgattcataagtaaaataatgttctcactcataggctgttctcaatgct
ttgaaatttttattaaagatctttgctccttttgccagttattgaggatt
acagctatcattagtaactattctgcctaatttacatttttatttcaaga
agagaaataaaaactaaaaaatggcagaggtgaatgaagcttcttttatt
aattttacttaattcagagtaattgttgattaccaagaaggatttggatt
ttatattatccaacagcaccaccaagtggtaacaatgttctttcttctct
cagagaaatcaaatggaattattatgtactattaagcacctacaatataa
ttagtattttttttcatttcagaaactccaagatttttaaaatgctgctt
gtgaattttaggtttattatttttactttcaattgtactcaaaaataaat
atgcaatgtacactttacataacaaaagttttggactttctggaaaaaat
taataacaaatatgagaatgtgaggaaaatttctacttatagaaaagaat
atatgaatggatatagaatattttcttcatgtaaacaaaaattttggctt
atcatgacatgccaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_89433755_89435161
seq2: B6Ng01-060O22.g_69_1186 (reverse)

seq1  TATTTGGCATGTTCTTAATTCCTGGTGTTAACAAATTCTGAATCTCTGTA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTGATGAGATTGTAACTGGTCCTGATAACTTACAACTAGGAAATTAGAAT  100
                                                        
seq2  --------------------------------------------------  0

seq1  ATAATTTTAGTGACGAACAGTTATGTCTCTTACTTGCTTTTGAAATTGTA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TATTATATTTAAGAATAATATTTGACTTTTATAAAAACCTCCAAGTCCAT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TATAATTTTTGTATTTCACATACAGATTACAACATGTATGTATTACTTAT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TTATTCATGATAAAAAAAAACTTGGTTTAATTTTGCTATTGTCATTGATA  300
                                   |||| ||   ||||| |||||
seq2  ----------------------------TATTTGGC--ATGTCA-TGATA  19

seq1  AGCCAAAATATTTTTGTTATCACTGGATGAAAATATTCTATATCCATTCA  350
      |||||||  ||||||||  | ||  || ||||||||||||||||||||||
seq2  AGCCAAA--ATTTTTGT--TTACATGAAGAAAATATTCTATATCCATTCA  65

seq1  TATATTCTTTTCTATAAGTAGATATTTTTCCTCACA-TCTCATATTTGTT  399
      |||||||||||||||||||||| | ||||||||||| |||||||||||||
seq2  TATATTCTTTTCTATAAGTAGA-AATTTTCCTCACATTCTCATATTTGTT  114

seq1  ATTTAATTTTTTTCCAGAAAGTCCAAAACTTTTGTTATGTAAAGTGTACA  449
      |||  | |||||||||||||||||||||||||||||||||||||||||||
seq2  ATT--AATTTTTTCCAGAAAGTCCAAAACTTTTGTTATGTAAAGTGTACA  162

seq1  TTGCATATTTTATTTTTTGAGTACAATTGAAAGTAAAAATAATAAACCTA  499
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  TTGCATATTT--ATTTTTGAGTACAATTGAAAGTAAAAATAATAAACCTA  210

seq1  AAATTCACAAGCAGCATTTTAAAAATCTTGGAGTTTCTGAAATGAAAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACAAGCAGCATTTTAAAAATCTTGGAGTTTCTGAAATGAAAAAA  260

seq1  AATACTAATTATATTGTAGGTGCTTAATAGTACATAATAATTCCATTTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAATTATATTGTAGGTGCTTAATAGTACATAATAATTCCATTTGA  310

seq1  TTTCTCTGAGAGAAGAAAGAACATTGTTACCACTTGGTGGTGCTGTTGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGAGAGAAGAAAGAACATTGTTACCACTTGGTGGTGCTGTTGGA  360

seq1  TAATATAAAATCCAAATCCTTCTTGGTAATCAACAATTACTCTGAATTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAAAATCCAAATCCTTCTTGGTAATCAACAATTACTCTGAATTAA  410

seq1  GTAAAATTAATAAAAGAAGCTTCATTCACCTCTGCCATTTTTTAGTTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTAATAAAAGAAGCTTCATTCACCTCTGCCATTTTTTAGTTTTT  460

seq1  ATTTCTCTTCTTGAAATAAAAATGTAAATTAGGCAGAATAGTTACTAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTTCTTGAAATAAAAATGTAAATTAGGCAGAATAGTTACTAATG  510

seq1  ATAGCTGTAATCCTCAATAACTGGCAAAAGGAGCAAAGATCTTTAATAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGTAATCCTCAATAACTGGCAAAAGGAGCAAAGATCTTTAATAAA  560

seq1  AATTTCAAAGCATTGAGAACAGCCTATGAGTGAGAACATTATTTTACTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAAGCATTGAGAACAGCCTATGAGTGAGAACATTATTTTACTTA  610

seq1  TGAATCATGTCTGCTTCAGTGTGAAAGATTAATTCAATTACATTGTTTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCATGTCTGCTTCAGTGTGAAAGATTAATTCAATTACATTGTTTAT  660

seq1  TTTCAGCTTCTGAAAAGGACAGTTTTTGTGTTAATACTCATGCTTTTACC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTTCTGAAAAGGACAGTTTTTGTGTTAATACTCATGCTTTTACC  710

seq1  TGATATAATCCCTAAATTGTGCTTTATTTACTTATTTATTTTGGTATTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAATCCCTAAATTGTGCTTTATTTACTTATTTATTTTGGTATTAT  760

seq1  ATTAGCAAACACAAAATTTAGCAATAGTTTATTGAATTGATACTAATAGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAAACACAAAATTTAGCAATAGTTTATTGAATTGATACTAATAGT  810

seq1  AAATAAATAATAGAATGTGGAGTAACATTTTAATTATAGTCACTCAAAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAATAGAATGTGGAGTAACATTTTAATTATAGTCACTCAAAAT  860

seq1  ATTTTCAACTAGAAATTTAATTTTCTGTTTAGCATTCAGAACTGCATTGT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAACTAGAAATTTAATTTTCTGTTTAGCATTCAGAACTGCATTGT  910

seq1  GCCTCAGAAGCACATTCTTTTGGTACAGTTACAGATATTTATTTGAAATT  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGAAGCACATTCTTTTGGTACAGTTACAGATATTTATTTGAAATT  960

seq1  AGTTTTCATTTAATTTAACTTCAAGTTTCATATTTTTGAAAATATGTGCA  1299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCATTTAATTTAACTTCAAGTTTCATATTTTTGAAAATATGTGCA  1010

seq1  TTATACAATTTAATTAAATATTTGACCTTGTGTTTGTTTGCTCACATAAA  1349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAATTTAATTAAATATTTGACCTTGTGTTTGTTTGCTCACATAAA  1060

seq1  CACAGAAAATTATACATATGCCTCTTTTCACATTAAATTGGGGCAAGCTG  1399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAATTATACATATGCCTCTTTTCACATTAAATTGGGGCAAGCTG  1110

seq1  ATGAATTC  1407
      ||||||||
seq2  ATGAATTC  1118


| Home | SequenceCutter | Blast | Download |