BAC Information

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BAC

Clone NameB6Ng01-061P12
Chromosome14 (Build37)17 (Build37)
Map Location 122,479,264 - 122,479,37435,559,562 - 35,559,929
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFarp1, LOC100043837, Stk24, Slc15a1, LOC100043577, Dock9, LOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2
Downstream geneTm9sf2, LOC621710, Clybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca, BC006662, 4930594M22Rik, Tmtc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061P12.bB6Ng01-061P12.g
ACCDH882500DH882501
length112803
definitionDH882500|Mus musculus domesticus DNA, BAC clone: B6Ng01-061P12, 5' end.DH882501|Mus musculus domesticus DNA, BAC clone: B6Ng01-061P12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(122,479,264 - 122,479,374)(35,559,562 - 35,559,929)
sequence
gaattccaaaagctctcaactccattcataacctaagaagactggaagca
ggccctgggacggcagagagaagtcattctggctcctctagggggtgtgg
gggtgggggaaa
gaattccagggctggagagatggctcagcagttaagagcactgactgctc
ttccagatgatcctggttcaattcccagcacccacatggcatctcacaac
tgcctgtaactccagtatctgacaacctcacacagacaatatgtgcaggc
aaaaccataccaatgtgcataaaataaaataaaaaaaaaatttttttaaa
gtgggtctggggctggtgagatagttcagtgggtaagagcacctgactac
tcttccggaggtccgaagttcaaatcccagcaaccacatggtggctcaca
accatccgtaatgagatctgatcccctcttctggggtgtctgaagacagc
tacagtgtacttacatataatttaaaaaaaaaaaaaaaagtggggctgga
gagatggctcagtggttaagaacaccgagtgttcttccagaggtcctgag
ttcaattcccagcacccacgtggtggttcacaaccatctgtaatgggatt
tgatgcccagttctaatgtatttgaagagggtgacaatgtactaatatgc
ataaataaatcttttttaaaacccaaaaacaaacaaacaaacaaaaaaca
aaaccaaaacaaacaaacaaacaaacaaacaaaaccaccaccaccaacaa
cacaaccgaattccatttctgggatccacaaggtggagagagaaactcaa
cttctgcaaattgtcttctgacctccacatgcacactgtgacatatatat
ctactatagtgaaaattctggaattctggtttcttaaaaaataaaataaa
ata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_122479264_122479374
seq2: B6Ng01-061P12.b_44_155

seq1  GAATTCCAAAAGCTCTCAACTCCATTCATAACCT-TGAAGACTGGAAGCA  49
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  GAATTCCAAAAGCTCTCAACTCCATTCATAACCTAAGAAGACTGGAAGCA  50

seq1  GGCCCTGGGACGGCAGAGAGAAGTCATTCTGGCTCCTCTAGGGGGTGTGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGGGACGGCAGAGAGAAGTCATTCTGGCTCCTCTAGGGGGTGTGG  100

seq1  GGGTGGGGGAAA  111
      ||||||||||||
seq2  GGGTGGGGGAAA  112

seq1: chr17_35559562_35559929
seq2: B6Ng01-061P12.g_280_708 (reverse)

seq1  TGGTTTTGTTTTAAATATTTATTTATTTATTTATTTATTTATTTATTTAG  50
      ||||||||         ||| ||| ||| ||| ||| ||  ||  ||| |
seq2  TGGTTTTG---------TTTGTTTGTTTGTTTGTTTGTT--TTGGTTTTG  39

seq1  TTATTATATGTAAGTACACTGTAGCTGGTCATGGTGTTTTTTTGTTTGTT  100
      || ||                             ||||| ||||||||||
seq2  TTTTT-----------------------------TGTTTGTTTGTTTGTT  60

seq1  TTT--GTTTT---AAATATTTATTTATTTAT-TTATTATA-TGT------  137
      |||  |||||   ||| ||||||||||  || ||| || | |||      
seq2  TTTGGGTTTTAAAAAAGATTTATTTATGCATATTAGTACATTGTCACCCT  110

seq1  ----AAGTACACTGTAGCTGGTCAT--------------GGTGTTTTT--  167
          || |||| |  | |||| |||              | || || |  
seq2  CTTCAAATACATTAGAACTGGGCATCAAATCCCATTACAGATGGTTGTGA  160

seq1  ---------TGTTTGTTTGGTTTTG-------------------------  183
               ||  || | ||  |||                         
seq2  ACCACCACGTGGGTGCTGGGAATTGAACTCAGGACCTCTGGAAGAACACT  210

seq1  ------TTTTAA----------------------------ATATTTGTTT  199
            | ||||                             | ||| |||
seq2  CGGTGTTCTTAACCACTGAGCCATCTCTCCAGCCCCACTTTTTTTTTTTT  260

seq1  GTTT--ATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAA  247
       |||  |||||||||||||||||||||||||||||||||||| |||||| 
seq2  TTTTAAATTATATGTAAGTACACTGTAGCTGTCTTCAGACACCCCAGAAG  310

seq1  AGGTTGTCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTG  297
      |||   |||||||||||||| |||||||||||||||||||||||||||||
seq2  AGGGGATCAGATCTCATTACGGATGGTTGTGAGCCACCATGTGGTTGCTG  360

seq1  GGAATTGAACTCAGGACCTCCAGAAGAGCAGTCA-GTGCTCTTCTTAACC  346
      ||| |||||||  |||||||| |||||| ||||| ||||   ||||| ||
seq2  GGATTTGAACTTCGGACCTCCGGAAGAGTAGTCAGGTGC---TCTTACCC  407

seq1  GCTGAGCCATCTCACCAGCCCC  368
       |||| | ||||||||||||||
seq2  ACTGAACTATCTCACCAGCCCC  429