BAC Information

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BAC

Clone NameB6Ng01-062E12
Chromosome14 (Build37)
Map Location 78,970,732 - 79,092,353
singlet/doubletdoublet
Overlap geneDgkh
Upstream geneD230005D02Rik, Gm1587, Dnajc15, Epsti1, AU021034, Tnfsf11, LOC219180, Akap11
Downstream geneLOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062E12.bB6Ng01-062E12.g
ACCDH882729DH882730
length1,1191,082
definitionDH882729|Mus musculus domesticus DNA, BAC clone: B6Ng01-062E12, 5' end.DH882730|Mus musculus domesticus DNA, BAC clone: B6Ng01-062E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,970,732 - 78,971,863)(79,091,259 - 79,092,353)
sequence
gaattctgtgctgccacacccagctcttaagctttgtttctatctagtgc
tgtattaaacttaagcttgaggcctgctagccatggtggtacatgcctga
agttccaggatttactagtcaggggttggtggataccaatttccaggtca
tctttggctacatagcaagtttgggaccagcctgggctacatgagacgca
ggatttggggaaagaaaaatgaggtttcacaggggaagataccagtgtcc
actacctgtaatttaaattgtaaatttatttgtatttgcatcatgagtcc
agatttgatgagaatatcttatttattagtgtgtgcgtgagtgtctgtgt
gaacgtgaatgagtctaggcatgcacatgccacagtgaccaggtggaatc
cagaggccagcttttgggagttggttttctcctctcactttttgaggctc
actctcttgttgcttaaattatgttgcaaaacatcctaggctagctggtc
tcagccctcagtgcttctaagtgattctcttattttaattctcccctatc
ttgctagacactcccccaagaagttaactataggattactaaagggaaat
gtcctaagaaagttcacacagttctacagtgtaggggctggatttatttt
gaagtcataaatgaagcagaccaaactgatttgaattacacacatggaca
cagcatatacactctctcttattctttagagcagtaataataaccattct
aaatccttcaagaaaaccattttttctatagccagcacaattcaagcttg
agataattctagggtaacattttttatcaaacttaactgacccaaaaaac
caaatgttctcaaatactacctggatgaacaaattagttcttaggctatt
tcacatttcttggatatgtgataaataccaaacttgagggcaagcccaaa
ttttatctgttgcataaatttacatataaatgagtgttttaatgggactg
gagagttggctcagtgactaaagtgcttgccactttgcaaagacacagtt
cagttcccagcactcatgttcagtggctacatctttctgtcaggcagctc
agtacctatgactctgctg
gaattcaaaaaaggatgtttattttaatgatgacattcagtaaatatgct
gccagttgtcagcacttaggaacggttgagcaaaatagaaaacaaaaata
aacaagcaaatatcaaaatgaaagaaacaaaacaaactactaaggagaga
atgagatcttgcctgaaggaacttgcaaattaaatccagagttgatctgc
ccagagtgatctgccctgttgtgacagaaggaaggtggtgacaccaggaa
gtggcaataagatgggagaggacagggccacacctttcctttagtgccct
gcaggcgggccacccttcctttctgttttattcgtctgtgatactcagat
ggagaaaccacactgggttgtgcagtaatgcaggggtccagattcacaga
gccacttcacagggccgtgggggagccagggaaccagggagggaggcagg
atgaactgcttgctgggtgcttgctggggatgggagttaacctagcctgg
catcaccaggagggcacctagccctttctgtgctctgacctggggttctg
catatcttccagcacctaccagccggctgcccctgcaaccccagcttgtc
ccactgcccacaccctcttatttgctgctctcctttccttgatttttctt
cttgaacaccttcttcaaagagcctggattgctagaacagtctccaaagg
cttaagagaaataccgacacaaaacaagttccatccctcttaaaagagag
aaaaataccctatagccagctatttttcctcctttagaccctttcaagac
aaataaaagtggatctgatactacgtcccctaagcccccatgaaggggct
gcaaagatgtctcagtggttaagagtacttaatgttcttgcagaggaccc
aagttcagttctcagcattcctggggcagtgcaaacagtgcaggtaactc
agttccagggcacccaatgctctctctgtgattcctccttcaggatgtgt
atacataacgctcacaggctcacacatactcaaaatcaataagcagcaaa
gaacaactttaaacagtgccgaaagtgtgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_78970732_78971863
seq2: B6Ng01-062E12.b_49_1167

seq1  GAATTCTGTGCTGCCACACCCAGCTCTTAAGCTTTGTTTCTATCTAGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCTGCCACACCCAGCTCTTAAGCTTTGTTTCTATCTAGTGC  50

seq1  TGTATTAAACTTAAGCTTGAGGCCTGCTAGCCATGGTGGTACATGCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAAACTTAAGCTTGAGGCCTGCTAGCCATGGTGGTACATGCCTGA  100

seq1  AGTTCCAGGATTTACTAGTCAGGGGTTGGTGGATACCAATTTCCAGGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGATTTACTAGTCAGGGGTTGGTGGATACCAATTTCCAGGTCA  150

seq1  TCTTTGGCTACATAGCAAGTTTGGGACCAGCCTGGGCTACATGAGACGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGCTACATAGCAAGTTTGGGACCAGCCTGGGCTACATGAGACGCA  200

seq1  GGATTTGGGGAAAGAAAAATGAGGTTTCACAGGGGAAGATACCAGTGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGGGGAAAGAAAAATGAGGTTTCACAGGGGAAGATACCAGTGTCC  250

seq1  ACTACCTGTAATTTAAATTGTAAATTTATTTGTATTTGCATCATGAGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTGTAATTTAAATTGTAAATTTATTTGTATTTGCATCATGAGTCC  300

seq1  AGATTTGATGAGAATATCTTATTTATTAGTGTGTGCGTGAGTGTCTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGATGAGAATATCTTATTTATTAGTGTGTGCGTGAGTGTCTGTGT  350

seq1  GAACGTGAATGAGTCTAGGCATGCACATGCCACAGTGACCAGGTGGAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGTGAATGAGTCTAGGCATGCACATGCCACAGTGACCAGGTGGAATC  400

seq1  CAGAGGCCAGCTTTTGGGAGTTGGTTTTCTCCTCTCACTTTTTGAGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCCAGCTTTTGGGAGTTGGTTTTCTCCTCTCACTTTTTGAGGCTC  450

seq1  ACTCTCTTGTTGCTTAAATTATGTTGCAAAACATCCTAGGCTAGCTGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTTGTTGCTTAAATTATGTTGCAAAACATCCTAGGCTAGCTGGTC  500

seq1  TCAGCCCTCAGTGCTTCTAAGTGATTCTCTTATTTTAATTCTCCCCTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCTCAGTGCTTCTAAGTGATTCTCTTATTTTAATTCTCCCCTATC  550

seq1  TTGCTAGACACTCCCCCAAGAAGTTAACTATAGGATTACTAAAGGGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGACACTCCCCCAAGAAGTTAACTATAGGATTACTAAAGGGAAAT  600

seq1  GTCCTAAGAAAGTTCACACAGTTCTACAGTGTAGGGGCTGGATTTATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAAGAAAGTTCACACAGTTCTACAGTGTAGGGGCTGGATTTATTTT  650

seq1  GAAGTCATAAATGAAGCAGACCAAACTGATTTGAATTACACACATGGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCATAAATGAAGCAGACCAAACTGATTTGAATTACACACATGGACA  700

seq1  CAGCATATACACTCTCTCTTATTCTTTAGAGCAGTAATAATAACCATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATATACACTCTCTCTTATTCTTTAGAGCAGTAATAATAACCATTCT  750

seq1  AAATCCTTCAAGAAAACCATTTTTTCTATAGCCAGCACAATTCAAGCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTCAAGAAAACCATTTTTTCTATAGCCAGCACAATTCAAGCTTG  800

seq1  AGATAATTCTAGGGTAACATTTTTTATCAAACTTAACTGACCCAAAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTCTAGGGTAACATTTTTTATCAAACTTAACTGACCCAAAAAAC  850

seq1  CAAATGTTCTCAAATACTACCTGGATGAACAAAATTAGTTCTTAGGCTAT  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAAATGTTCTCAAATACTACCTGGATGAAC-AAATTAGTTCTTAGGCTAT  899

seq1  TTCACATTTCTTGGATATGTGATAAATACCAAACTTGAGGGCAAGCCCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTTCTTGGATATGTGATAAATACCAAACTTGAGGGCAAGCCCAA  949

seq1  ATTTTTATCTGTTGCATAAATTTACAATATAAATGAGTGTTTTAATGGGA  1000
      | ||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  A-TTTTATCTGTTGCATAAATTTAC-ATATAAATGAGTGTTTTAATGGGA  997

seq1  CTGGAGAGTTGGCTCAGTGACTAAAGTTGGCTTGCCACTTTGCAAAAGAC  1050
      |||||||||||||||||||||||||||  |||||||||||||| ||||||
seq2  CTGGAGAGTTGGCTCAGTGACTAAAGT--GCTTGCCACTTTGC-AAAGAC  1044

seq1  ACAAGTTCAGTTCCCAGCACCCATGTCAAGTGGCTTACATCTTTCTGTCA  1100
      || ||||||||||||||||| |||||  |||||| |||||||||||||||
seq2  AC-AGTTCAGTTCCCAGCACTCATGTTCAGTGGC-TACATCTTTCTGTCA  1092

seq1  GGGCAGCTCCAGGTACCCTATGACTTCTGCTG  1132
       ||||||||   ||| |||||||| |||||||
seq2  -GGCAGCTC--AGTA-CCTATGAC-TCTGCTG  1119

seq1: chr14_79091259_79092353
seq2: B6Ng01-062E12.g_68_1149 (reverse)

seq1  CCTCACACTTCTCGGCACTGGTTTTAAAGGTTGTTTTGGTTTGCCTGCTT  50
      |||||||||| |||||||||  |||||| ||||||    |||| ||||||
seq2  CCTCACACTT-TCGGCACTG--TTTAAA-GTTGTT---CTTTG-CTGCTT  42

seq1  ATTGATTTTGAGTATTGTGTGAGCCTGTGAGCGTTTATGTATACACATTC  100
      |||||||||||||| |||||||||||||||||| ||||||||||||| ||
seq2  ATTGATTTTGAGTA-TGTGTGAGCCTGTGAGCG-TTATGTATACACA-TC  89

seq1  CTGAAGGAGGAATTCACAGAGGAGAGCATTGGGTGCCCTGGAACTGAGTT  150
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  CTGAAGGAGGAA-TCACAGA-GAGAGCATTGGGTGCCCTGGAACTGAGTT  137

seq1  ACCTGCACTGTTTGCACTGCCCCAGGAATGCTGAGAACTGAACTTGGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCACTGTTTGCACTGCCCCAGGAATGCTGAGAACTGAACTTGGGTC  187

seq1  CTCTGCAAGAACATTAAGTACTCTTAACCACTGAGACATCTTTGCAGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAAGAACATTAAGTACTCTTAACCACTGAGACATCTTTGCAGCCC  237

seq1  CTTCATGGGGGCTTAGGGGACGTAGTATCAGATCCACTTTTATTTGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGGGGGCTTAGGGGACGTAGTATCAGATCCACTTTTATTTGTCTT  287

seq1  GAAAGGGTCTAAAGGAGGAAAAATAGCTGGCTATAGGGTATTTTTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTCTAAAGGAGGAAAAATAGCTGGCTATAGGGTATTTTTCTCTC  337

seq1  TTTTAAGAGGGATGGAACTTGTTTTGTGTCGGTATTTCTCTTAAGCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGAGGGATGGAACTTGTTTTGTGTCGGTATTTCTCTTAAGCCTTT  387

seq1  GGAGACTGTTCTAGCAATCCAGGCTCTTTGAAGAAGGTGTTCAAGAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTGTTCTAGCAATCCAGGCTCTTTGAAGAAGGTGTTCAAGAAGAA  437

seq1  AAATCAAGGAAAGGAGAGCAGCAAATAAGAGGGTGTGGGCAGTGGGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGGAAAGGAGAGCAGCAAATAAGAGGGTGTGGGCAGTGGGACAA  487

seq1  GCTGGGGTTGCAGGGGCAGCCGGCTGGTAGGTGCTGGAAGATATGCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGTTGCAGGGGCAGCCGGCTGGTAGGTGCTGGAAGATATGCAGAA  537

seq1  CCCCAGGTCAGAGCACAGAAAGGGCTAGGTGCCCTCCTGGTGATGCCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGTCAGAGCACAGAAAGGGCTAGGTGCCCTCCTGGTGATGCCAGG  587

seq1  CTAGGTTAACTCCCATCCCCAGCAAGCACCCAGCAAGCAGTTCATCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTAACTCCCATCCCCAGCAAGCACCCAGCAAGCAGTTCATCCTGC  637

seq1  CTCCCTCCCTGGTTCCCTGGCTCCCCCACGGCCCTGTGAAGTGGCTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCCTGGTTCCCTGGCTCCCCCACGGCCCTGTGAAGTGGCTCTGT  687

seq1  GAATCTGGACCCCTGCATTACTGCACAACCCAGTGTGGTTTCTCCATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGGACCCCTGCATTACTGCACAACCCAGTGTGGTTTCTCCATCTG  737

seq1  AGTATCACAGACGAATAAAACAGAAAGGAAGGGTGGCCCGCCTGCAGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCACAGACGAATAAAACAGAAAGGAAGGGTGGCCCGCCTGCAGGGC  787

seq1  ACTAAAGGAAAGGTGTGGCCCTGTCCTCTCCCATCTTATTGCCACTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGGAAAGGTGTGGCCCTGTCCTCTCCCATCTTATTGCCACTTCCT  837

seq1  GGTGTCACCACCTTCCTTCTGTCACAACAGGGCAGATCACTCTGGGCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCACCACCTTCCTTCTGTCACAACAGGGCAGATCACTCTGGGCAGA  887

seq1  TCAACTCTGGATTTAATTTGCAAGTTCCTTCAGGCAAGATCTCATTCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCTGGATTTAATTTGCAAGTTCCTTCAGGCAAGATCTCATTCTCT  937

seq1  CCTTAGTAGTTTGTTTTGTTTCTTTCATTTTGATATTTGCTTGTTTATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTAGTTTGTTTTGTTTCTTTCATTTTGATATTTGCTTGTTTATTT  987

seq1  TTGTTTTCTATTTTGCTCAACCGTTCCTAAGTGCTGACAACTGGCAGCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCTATTTTGCTCAACCGTTCCTAAGTGCTGACAACTGGCAGCAT  1037

seq1  ATTTACTGAATGTCATCATTAAAATAAACATCCTTTTTTGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGAATGTCATCATTAAAATAAACATCCTTTTTTGAATTC  1082