BAC Information

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BAC

Clone NameB6Ng01-062H02
Chromosome14 (Build37)
Map Location 91,691,292 - 91,692,546
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043336, EG639558
Downstream geneEG665377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062H02.bB6Ng01-062H02.g
ACCDH882838DH882839
length1,2551,226
definitionDH882838|Mus musculus domesticus DNA, BAC clone: B6Ng01-062H02, 5' end.DH882839|Mus musculus domesticus DNA, BAC clone: B6Ng01-062H02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctattcagaaaaatttctcctaaatcagtgagttcaatgttattt
ctcactttctcttcaaagggatttagtgtatccagttttatgttgagatc
cttgatccacttagacttgacttttttgcagggtgataagtatgaatata
tttttatacttcatgaagatacccaggcagagcaggaccatttgttgata
atgccttcattttccactgtactttggcttctttatcaaaactcaagtac
ccatatgggtataggtttatttctgggtctttgattatattccattgata
atgtgcctctttatgtactaataccatacagtttttatcactagtactca
aaagtatagctttaagtcatgtgttttttgatttttgtttcattttgttt
tgttttgtttttattgttcaggattgttttagctattttagttttattat
tttccagtatgatgttgagaattgctttttcaagatctttcaaaaatttt
gttgaaattttgatagggattgcatagaatctgtagattgctttggtaag
gtggccattttcactatgttatacctacctctccttgagaaagggagatt
tttccagcttcaggtatgttcttctttttttctttttttcttcagagact
tgaaattcttgtcatacagatcgttcacatacttggtgagagttatacca
aaatatttcttgtgattcgtggctattgtaaagagtgttgtttccctaat
ttctttcttagaaggttaatcatttttgcaaaagagagatgatgacttct
ttaaattacttttttatccagacattttgctgaagcagttgattagatgg
agaagttctccagtagaatatttggggctgcttatctgtactatcagaac
aactgtaaacagtgatactttgacttcatcctttccaagttgatctcctt
tagttgtcttattgctctggctagaacttcaagtgctacatttaatagat
aggaagagaagtagacagcatgtctttccatgattatagtgggaatgctt
taacatctctcatttagctgatggagctaatgctgctgttattgcttgat
tattctggaagtaactttatcactgacatactcttaacaaagggtggatg
tcaagtcttttcgataagtagacatagatcttattgcacttattaatgat
tatgacatcacggcagtgccaggtcctcaatcgcacctcatcattgactg
gatca
gaattcatattttcaagaatcactagaaattacacaatttcccagcatgt
actgttcttcactctggataatgtcttagacataaaagtcaccattattt
ctgcattaaaagactaaaaatatttttttaaattattggataatatgttc
gtatttcttgactatattggctaatgagtctttgataaaacaaacataat
gtgaaaggatttcatactatattcattcaactgagaggaacaataggaga
cgatcaatgaaaacttgaaactgttcagttctgaatgaagagaaacacat
aatgaaagaagttttagagttatagaattagatcttaaaactaaatgctg
atatctctaccatttattccacagagatctccataagctttcacatatct
ggcttattttctgcctacaaaaattgattcaataatttctagcactataa
aataatacactgtaggtgagataatatgtgcaaatgatcaatttagaaaa
tgttatttcattagtgatagattaaaatgtagtgatataatgtcttcatt
acaaaattgatccctgagtgcttattctactgaaattctgacacgggttg
gtacaacttttaagaccatgttgtttcctaaaaacttttgcatagactca
agtcctcattttcagttttaagcctgaggcaaggtgtaaaacattaagcc
aacactggcaatacttttgactaaaagatgagaagttaaactcattcttg
ctagaatcacagctagaaccagctagaaagctgtcctaggcaactttcag
aacacgttgtcaaaggaagtctctcaggttgtaagttctaaaagagcaag
ttcctgccagagtattcgggattatttgtggtacttcattttatatcatg
acactcattgattgaatacatgttgcttttaatttttaattgaatatcaa
gtgtttccctatctgtattctgattagcttcacttgcccacatgtactca
cattctgcatctttcgtcaaacacaccacacaaacacacaccacacacac
aacacacgacaccctgatccatccatacctggttctggtaatttaatctg
ctggcatcctcgacaatagtgtagaaacaagaaatttttttctgaatatt
cattttgagctctgctcatttccgatgagatattatgagaggcaaggcct
ctaaataatttccaagtgattaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_91691292_91692546
seq2: B6Ng01-062H02.g_70_1295 (reverse)

seq1  ATTTTAATCACTTTGAAAATTTAATTAGAAGCCTTTGCCTTTTTATTATA  50
      ||||||||||||| ||||  ||| ||||| ||| ||||| | | || |||
seq2  ATTTTAATCACTTGGAAA--TTATTTAGAGGCC-TTGCC-TCTCATAATA  46

seq1  TTAATCATCATTGTGGAAAATGAGCAGTGTCATAAAATGAATATTCAAGA  100
      |   |||||      | |||||||||| | |  ||||||||||||||  |
seq2  T--CTCATC------GGAAATGAGCAGAG-CTCAAAATGAATATTCAGAA  87

seq1  AAAAAATTCTTGTTTTCTAACACTATTGTTGATGATGACAAGCAGGATAA  150
      ||||| |||||| ||||| |||||||||| || |||| | |||| ||| |
seq2  AAAAATTTCTTG-TTTCT-ACACTATTGTCGAGGATG-CCAGCA-GATTA  133

seq1  AATATACGAGAACAGAGGTATGGAGTGGATTGAGTGTGTGTGTGTGTGTG  200
      ||| ||| |||||  ||||||||| |||| | || ||||  |||||| ||
seq2  AAT-TACCAGAAC-CAGGTATGGA-TGGA-TCAGGGTGT-CGTGTGT-TG  177

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGGAAAGATGCAGGAT  250
      |||||||| |||||||| |||||| |||||| ||| ||||||||||| ||
seq2  TGTGTGTG-GTGTGTGTTTGTGTG-GTGTGTTTGACGAAAGATGCAGAAT  225

seq1  GTGAGTACATGTGGGCAAAGTGAAGCTAATCAGAATACAAGATAGGGAAA  300
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  GTGAGTACATGTGGGC-AAGTGAAGCTAATCAGAATAC-AGATAGGGAAA  273

seq1  CACTTGATATTCAATTAAAAAATTAAAAAGCAACATGTATTCAATCAATG  350
      |||||||||||||||||||||  | |||||||||||||||||||||||||
seq2  CACTTGATATTCAATTAAAAA--TTAAAAGCAACATGTATTCAATCAATG  321

seq1  AGTGTCATGATATAAAATGAAGTACCACAAATAATCCCGAATAACTCTGG  400
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTGTCATGATATAAAATGAAGTACCACAAATAATCCCGAAT-ACTCTGG  370

seq1  CAGGAACTTGCTCTTTTAGAACTTACAACCTGAGAGACTTCCTTTGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACTTGCTCTTTTAGAACTTACAACCTGAGAGACTTCCTTTGACAA  420

seq1  CGTGTTCTGAAAGTTGCCTAGGACAGCTTTCTAGCTGGTTCTAGCTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTCTGAAAGTTGCCTAGGACAGCTTTCTAGCTGGTTCTAGCTGTGA  470

seq1  TTCTAGCAAGAATGAGTTTAACTTCTCATC-TTTAGTCAAAAGTATTGCC  549
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCTAGCAAGAATGAGTTTAACTTCTCATCTTTTAGTCAAAAGTATTGCC  520

seq1  AGTGTTGGCTTAATGTTTTACACCTTGCCTCAGGCTTAAAACTGAAAATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGGCTTAATGTTTTACACCTTGCCTCAGGCTTAAAACTGAAAATG  570

seq1  AGGACTTGAGTCTATGCAAAAGTTTTTAGGAAACAACATGGTCTTAAAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTGAGTCTATGCAAAAGTTTTTAGGAAACAACATGGTCTTAAAAG  620

seq1  TTGTACCAACCCGTGTCAGAATTTCAGTAGAATAAGCACTCAGGGATCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCAACCCGTGTCAGAATTTCAGTAGAATAAGCACTCAGGGATCAA  670

seq1  TTTTGTAATGAAGACATTATATCACTACATTTTAATCTATCACTAATGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAATGAAGACATTATATCACTACATTTTAATCTATCACTAATGAA  720

seq1  ATAACATTTTCTAAATTGATCATTTGCACATATTATCTCACCTACAGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTTTCTAAATTGATCATTTGCACATATTATCTCACCTACAGTGT  770

seq1  ATTATTTTATAGTGCTAGAAATTATTGAATCAATTTTTGTAGGCAGAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTATAGTGCTAGAAATTATTGAATCAATTTTTGTAGGCAGAAAA  820

seq1  TAAGCCAGATATGTGAAAGCTTATGGAGATCTCTGTGGAATAAATGGTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAGATATGTGAAAGCTTATGGAGATCTCTGTGGAATAAATGGTAG  870

seq1  AGATATCAGCATTTAGTTTTAAGATCTAATTCTATAACTCTAAAACTTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCAGCATTTAGTTTTAAGATCTAATTCTATAACTCTAAAACTTCT  920

seq1  TTCATTATGTGTTTCTCTTCATTCAGAACTGAACAGTTTCAAGTTTTCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATGTGTTTCTCTTCATTCAGAACTGAACAGTTTCAAGTTTTCAT  970

seq1  TGATCGTCTCCTATTGTTCCTCTCAGTTGAATGAATATAGTATGAAATCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCGTCTCCTATTGTTCCTCTCAGTTGAATGAATATAGTATGAAATCC  1020

seq1  TTTCACATTATGTTTGTTTTATCAAAGACTCATTAGCCAATATAGTCAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATTATGTTTGTTTTATCAAAGACTCATTAGCCAATATAGTCAAG  1070

seq1  AAATACGAACATATTATCCAATAATTTAAAAAAATATTTTTAGTCTTTTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACGAACATATTATCCAATAATTTAAAAAAATATTTTTAGTCTTTTA  1120

seq1  ATGCAGAAATAATGGTGACTTTTATGTCTAAGACATTATCCAGAGTGAAG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAAATAATGGTGACTTTTATGTCTAAGACATTATCCAGAGTGAAG  1170

seq1  AACAGTACATGCTGGGAAATTGTGTAATTTCTAGTGATTCTTGAAAATAT  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTACATGCTGGGAAATTGTGTAATTTCTAGTGATTCTTGAAAATAT  1220

seq1  GAATTC  1255
      ||||||
seq2  GAATTC  1226