BAC Information

Click to search

BAC

Clone NameB6Ng01-065H08
Chromosome14 (Build37)
Map Location 72,306,081 - 72,469,772
singlet/doubletdoublet
Overlap genenone
Upstream geneGfra2, LOC100043132, LOC100043136, LOC668477
Downstream geneLOC668482, LOC675957, Fndc3a, LOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065H08.bB6Ng01-065H08.g
ACCDH884928DH884929
length1,0521,114
definitionDH884928|Mus musculus domesticus DNA, BAC clone: B6Ng01-065H08, 5' end.DH884929|Mus musculus domesticus DNA, BAC clone: B6Ng01-065H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,306,081 - 72,307,155)(72,468,642 - 72,469,772)
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaaat
gttcagcatccttaatcatcagggaaatgcaaatcaaaacagcccacatg
tattttccatgcctagatttcacatgctttctagaaccaagagatttctt
tgaatgcttcaatgaaaacagtaaccccactactaccccctttttgaact
ccacaaaacattttcctttcacagaattatacttggtagcatgtcctttc
attttatctctttccagctcagacttcaaagagctagaggttttcatagc
tctcagagttaacctaatggtttccaattcatcactccatttgttcctcc
ctatcttgtgagaaaaggcatgctgcccacaatttgttttgatttaggga
tatgaatcaaaaaatggttaagaatcgccatcaaattcattgatggtcag
agtctggatggaagtcttaggatctggactccatagctctttttgttaaa
acaatggttaacaaacaacttaaaaattaggccttgcacgtatatttcac
ttcacatttatgctattttgggaattttagtcaatacttcaagacttggg
gagtcatggagaaatctgggtttcgacctttctcttttaaagatatgatg
attggtagggttgtgttcctgcttggtaatgacgggttcagtctagaaca
tgggctctgatatgtcactgagctcattgcacatcaccatgtctttcacg
ccaaggctgagcatcagctgccacttattatggtgccctggggtattata
gggcaataaatatttcagagagaaaatatttctgctactcacgactcttt
tggggttggggaagtgatgggagagctgaggaggacttcctgtttgcaga
aaaggagacaagtatgcccttatatagacaagttatttgcacattactac
aaagtgtctcagcaggcttcaggcagttcaagagctcataccagttacta
atactcttgtcttccctggtggtttataacttacagcttgtcacaatatc
aa
gaattcttctccattcttcaggagacaaataatgtttgtttttaaaaaaa
aaaacaaaagagagaaaaaaaagaaagaaagtactatttagcaacagggc
ttgtctctaagaagagtctctttagagactatacaccatagaaggaatac
cagatcatgataattttaaaatgtccaggatcttttcaataccagtgatg
aagcagaactttctgtgaaccacctgaaaaaaaatcacagcgtgcagcat
ttgaagatggtctattaggacagcccaggagctggctctcctcactcact
tgggtccttgtgctgtctctctagtcatctctgtggctagttggggtcaa
tttgtggatttcaccaagaacttgtaccactgaccagaattttcaagagc
acccaggttttgcaagtggagtgcttcctttacatcataaccaggagagt
cagagctgcacagggaggagactgtcctgtagcaagacaattttactaag
accccaaatcttggtccttcttccagtctgttgtgagagaagggatgctc
tttaatggcactaatgcagatgacactgggtctatttgaatctgtggaag
agagtgcgcgatgtgttcctgggatatctggcttctgtggaggaaaactt
tctaccatgtagcttcatctagttgttctccatccttacctttgataatg
accgtgatggttagtcttcattgccaacctgaacagacttttagaaacac
ctaagaggcttcaccactagatacaacttgagggtcttttcactggggag
agaagacatagcctgaagtggagatggcaccatcccacaggctggaatct
ggggtgattaacaaacaaataagctttcgtataaaccagaggagtcaccg
ctaagttttaattgctagtgagttgtctgttttggcaaatccttactgtt
gcctcaccatgaattggagtcattcagccaggtcattgttctgaggagtt
aatgattgctcatccttactagaaggagtctgctacaccttaagtctggg
gcatgtggcccatactgctatcttcgaacaaaagaatgtggtcctacctt
ctgaatacaaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_72306081_72307155
seq2: B6Ng01-065H08.b_47_1098

seq1  GAATTCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAAAT  50

seq1  GTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAGCCCACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAGCCCACATG  100

seq1  TATTTTCCATGCCTAGATTTCACATGCTTTCTAGAACCAAGAGATTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCATGCCTAGATTTCACATGCTTTCTAGAACCAAGAGATTTCTT  150

seq1  TGAATGCTTCAATGAAAACAGTAACCCCACTACTACCCCCTTTTTGAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCTTCAATGAAAACAGTAACCCCACTACTACCCCCTTTTTGAACT  200

seq1  CCACAAAACATTTTCCTTTCACAGAATTATACTTGGTAGCATGTCCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAACATTTTCCTTTCACAGAATTATACTTGGTAGCATGTCCTTTC  250

seq1  ATTTTATCTCTTTCCAGCTCAGACTTCAAAGAGCTAGAGGTTTTCATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCTCTTTCCAGCTCAGACTTCAAAGAGCTAGAGGTTTTCATAGC  300

seq1  TCTCAGAGTTAACCTAATGGTTTCCAATTCATCACTCCATTTGTTCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGTTAACCTAATGGTTTCCAATTCATCACTCCATTTGTTCCTCC  350

seq1  CTATCTTGTGAGAAAAGGCATGCTGCCCACAATTTGTTTTGATTTAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTGTGAGAAAAGGCATGCTGCCCACAATTTGTTTTGATTTAGGGA  400

seq1  TATGAATCAAAAAATGGTTAAGAATCGCCATCAAATTCATTGATGGTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATCAAAAAATGGTTAAGAATCGCCATCAAATTCATTGATGGTCAG  450

seq1  AGTCTGGATGGAAGTCTTAGGATCTGGACTCCATAGCTCTTTTTGTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGATGGAAGTCTTAGGATCTGGACTCCATAGCTCTTTTTGTTAAA  500

seq1  ACAATGGTTAACAAACAACTTAAAAATTAGGCCTTGCACGTATATTTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGTTAACAAACAACTTAAAAATTAGGCCTTGCACGTATATTTCAC  550

seq1  TTCACATTTATGCTATTTTGGGAATTTTAGTCAATACTTCAAGACTTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTTATGCTATTTTGGGAATTTTAGTCAATACTTCAAGACTTGGG  600

seq1  GAGTCATGGAGAAATCTGGGTTTCGACCTTTCTCTTTTAAAGATATGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATGGAGAAATCTGGGTTTCGACCTTTCTCTTTTAAAGATATGATG  650

seq1  ATTGGTAGGGTTGTGTTCCTGCTTGGTAATGACGGGTTCAGTCTAGAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTAGGGTTGTGTTCCTGCTTGGTAATGACGGGTTCAGTCTAGAACA  700

seq1  TGGGCTCTGATATGTCACTGAGCTCATTGCACATCACCATGTCTTTCACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCTGATATGTCACTGAGCTCATTGCACATCACCATGTCTTTCACG  750

seq1  CCAAGGCTGAGCATCAGCTGCCACTTATTATGGTGCCCTGGGGTATTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCTGAGCATCAGCTGCCACTTATTATGGTGCCCTGGGGTATTATA  800

seq1  GGGCAATAAATATTTCAGAGAGAAAATATTTCTGCTACTCACGACTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAATAAATATTTCAGAGAGAAAATATTTCTGCTACTCACGACTCTTT  850

seq1  TGGGGTTGGGGAAGTGATGGGAGAGCTGAGGAGGACTTCCTGTTTGCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGGGTTGGGGAAGTGATGGGAGAGCTGAGGAGGACTTCCTGTTTGCAG-  899

seq1  AAAAGGGAGACAAGTATGCCCTTATATAGACAAGGTTATTTGCACATTAC  950
       ||| |||||||||||||||||||||||||||| ||||||||||||||||
seq2  -AAAAGGAGACAAGTATGCCCTTATATAGACAA-GTTATTTGCACATTAC  947

seq1  TTAACAAAGTGTTCTCAGCCAGGCTTCAGGGCAGTTTCAGGAAGCTCATA  1000
      |  |||||||| |||||| ||||||||| |||||||  ||  ||||||||
seq2  T--ACAAAGTG-TCTCAG-CAGGCTTCA-GGCAGTTCAAG--AGCTCATA  990

seq1  CCCAGTTACTATATCTCTTGGTTCTTTCCACATGGGTGGTTTTATAAACT  1050
       ||||||||||   ||||||  |||| ||     ||||| |||||||   
seq2  -CCAGTTACTAATACTCTTG--TCTTCCC----TGGTGG-TTTATAA--C  1030

seq1  TTACAGCCTTGTTCACAATTATCAA  1075
      |||||| |||| |||||| ||||||
seq2  TTACAG-CTTG-TCACAA-TATCAA  1052

seq1: chr14_72468642_72469772
seq2: B6Ng01-065H08.g_69_1182 (reverse)

seq1  TCCTTTGTAACTCAGAAAGGTTAGGA-CACATTCTTCTGTCTGAAGATAG  49
      |||||||| | ||||||  | ||||| ||||||||| |||  ||||||||
seq2  TCCTTTGT-ATTCAGAA--GGTAGGACCACATTCTTTTGTTCGAAGATAG  47

seq1  CAGGTATTGGCACAATGCCCCAGACTCTAAGGTGTAGACAGAACTTCCTC  99
      || |||| |||   |||||||||||| |||||||||| ||| ||| | ||
seq2  CA-GTATGGGCCACATGCCCCAGACT-TAAGGTGTAG-CAG-ACTCCTTC  93

seq1  TAAGTAAGGATGAGCCATTCATAAACTCCTCAGAACCAATGAACCCTGGG  149
      | |||||||||||| || |||| |||||||||||| ||||||  ||| ||
seq2  T-AGTAAGGATGAG-CAATCATTAACTCCTCAGAA-CAATGA--CCT-GG  137

seq1  CTGAAATGACTCCAAATTCATGGTGAGGCAACAGTAAGGAATTTGCCAAA  199
      ||| ||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  CTG-AATGACTCC-AATTCATGGTGAGGCAACAGTAAGG-ATTTGCCAAA  184

seq1  AACAAGACAACTCACTAGCAATTAAAACTTAGCGGTGACTCCTCTGGTTT  249
      |   ||||||||||||||||||||||||||||||||||||||||||||||
seq2  A--CAGACAACTCACTAGCAATTAAAACTTAGCGGTGACTCCTCTGGTTT  232

seq1  ATACGAAAGCTTATTTGTTTGTTAATCACCCCAGATTCCAGCCTGTGGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGAAAGCTTATTTGTTTGTTAATCACCCCAGATTCCAGCCTGTGGGA  282

seq1  TGGTGCCATCTCCACTTCAGGCTATGTCTTCTCTCCCCAGTGAAAAGACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCATCTCCACTTCAGGCTATGTCTTCTCTCCCCAGTGAAAAGACC  332

seq1  CTCAAGTTGTATCTAGTGGTGAAGCCTCTTAGGTGTTTCTAAAAGTCTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTTGTATCTAGTGGTGAAGCCTCTTAGGTGTTTCTAAAAGTCTGT  382

seq1  TCAGGTTGGCAATGAAGACTAACCATCACGGTCATTATCAAAGGTAAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTGGCAATGAAGACTAACCATCACGGTCATTATCAAAGGTAAGGA  432

seq1  TGGAGAACAACTAGATGAAGCTACATGGTAGAAAGTTTTCCTCCACAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAACAACTAGATGAAGCTACATGGTAGAAAGTTTTCCTCCACAGAA  482

seq1  GCCAGATATCCCAGGAACACATCGCGCACTCTCTTCCACAGATTCAAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATATCCCAGGAACACATCGCGCACTCTCTTCCACAGATTCAAATA  532

seq1  GACCCAGTGTCATCTGCATTAGTGCCATTAAAGAGCATCCCTTCTCTCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGTGTCATCTGCATTAGTGCCATTAAAGAGCATCCCTTCTCTCAC  582

seq1  AACAGACTGGAAGAAGGACCAAGATTTGGGGTCTTAGTAAAATTGTCTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACTGGAAGAAGGACCAAGATTTGGGGTCTTAGTAAAATTGTCTTG  632

seq1  CTACAGGACAGTCTCCTCCCTGTGCAGCTCTGACTCTCCTGGTTATGATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGACAGTCTCCTCCCTGTGCAGCTCTGACTCTCCTGGTTATGATG  682

seq1  TAAAGGAAGCACTCCACTTGCAAAACCTGGGTGCTCTTGAAAATTCTGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAGCACTCCACTTGCAAAACCTGGGTGCTCTTGAAAATTCTGGT  732

seq1  CAGTGGTACAAGTTCTTGGTGAAATCCACAAATTGACCCCAACTAGCCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTACAAGTTCTTGGTGAAATCCACAAATTGACCCCAACTAGCCAC  782

seq1  AGAGATGACTAGAGAGACAGCACAAGGACCCAAGTGAGTGAGGAGAGCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGACTAGAGAGACAGCACAAGGACCCAAGTGAGTGAGGAGAGCCA  832

seq1  GCTCCTGGGCTGTCCTAATAGACCATCTTCAAATGCTGCACGCTGTGATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGGGCTGTCCTAATAGACCATCTTCAAATGCTGCACGCTGTGATT  882

seq1  TTTTTTCAGGTGGTTCACAGAAAGTTCTGCTTCATCACTGGTATTGAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAGGTGGTTCACAGAAAGTTCTGCTTCATCACTGGTATTGAAAA  932

seq1  GATCCTGGACATTTTAAAATTATCATGATCTGGTATTCCTTCTATGGTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGGACATTTTAAAATTATCATGATCTGGTATTCCTTCTATGGTGT  982

seq1  ATAGTCTCTAAAGAGACTCTTCTTAGAGACAAGCCCTGTTGCTAAATAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTCTAAAGAGACTCTTCTTAGAGACAAGCCCTGTTGCTAAATAGT  1032

seq1  ACTTTCTTTCTTTTTTTTCTCTCTTTTGTTTTTTTTTTTAAAAACAAACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTTCTTTTTTTTCTCTCTTTTGTTTTTTTTTTTAAAAACAAACA  1082

seq1  TTATTTGTCTCCTGAAGAATGGAGAAGAATTC  1131
      ||||||||||||||||||||||||||||||||
seq2  TTATTTGTCTCCTGAAGAATGGAGAAGAATTC  1114