BAC Information

Click to search

BAC

Clone NameB6Ng01-065H18
Chromosome6 (Build37)14 (Build37)
Map Location 18,835,412 - 18,835,968123,330,591 - 123,331,729
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065H18.bB6Ng01-065H18.g
ACCDH884946DH884947
length9481,123
definitionDH884946|Mus musculus domesticus DNA, BAC clone: B6Ng01-065H18, 5' end.DH884947|Mus musculus domesticus DNA, BAC clone: B6Ng01-065H18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,412 - 18,835,968)(123,330,591 - 123,331,729)
sequence
gaattctttgttcagttctgagccccattttttaatggggttgttcgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagcccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttgttgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacatgccattgctgtt
ctgttcatgaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtttctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctcctaattcgttgaagaattgagttgggaattttga
tggggattgcattgaatctgtagattgtttttggcaagatagccattttt
acaatgttgatcctgccaatccatgagcatgggagatctttccatcttct
gagatcttctttaatttctttcttcagagatttgaagtttttatcataca
gatctttcacctccttagtagagttacgccaagatattttatactatt
gaattcaatagaaactaatatttaaaaacaaacctgtaacttattttctg
agcttccttgttctctttccccaagggaacagatctcttgctttgcaagg
ggacatcctcctgaaaaggacagtgtcaggaattagtgtttatctaaaag
ggccttgcagttacttaatgggcatagaaactaaagtgcttgaattgctc
tgtatttctggttcttgacaaaatatttaaggtaatctgattgctcttaa
ttttcatggcaaagaaaataatgtggctcaaacagcataattctttaaac
aggactcattacattgactaggtgaaattggtaagggaaatactttggat
ctgtctgagccaaaacggattgtacatacagagatggaacatctaggagg
agtgtatagcttcacaagtaggtagcatgtacaggttaaaaaaaaaatct
tgcttatcctcatttgaaatacccaaagcatcttttgtgtaaacaaaact
agttcctcacatcagttattcatccaaataatcatctcatgtcctatttg
ataattcagatgtcccataaaaaacaaacaaatgtcccccagcatggccc
tgcctctggtaatcatccctgtctagactttgacgacccagtcaaggcag
aggggaaaccaagaaaacattgggtatttggatactttaatagaaagaat
aggctttccattttttaccacgacatgaataactttggccttttacatgt
ttgtttctggaatgatgagccaagattttgttgactgcacaagtagaatg
aacagaggaaaaaaaaaaaatggccaggcgcatggtttccaagaagaaga
ctgactttctatgctggacaggtcactttaagtggaaggacgaggcttgt
attataaattttagatgaagtagttttatttaaaaaaaccacaaccttgt
ttaggtggtgatatatgtatgatagtatgaaaggacgacacatctctgga
atctaatcagtgtcaaaagaaggggcaccctcctggaggccagttgagct
gagactcaccccccgtgactcagcgagtgatattggacgaaggaaaagcc
cgaatcctggtccaatcagctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835412_18835968
seq2: B6Ng01-065H18.b_49_606 (reverse)

seq1  CAAGTAGACCAATGGAATAGAATTGAAGACCCAGAGATGAACCCACACAC  50
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACAC  50

seq1  CTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGA  100

seq1  AAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCTTGT  150
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGT  150

seq1  AGAAGAATGTGAATCGATCCATACTTATCTCCATGTACTAAGGTCAAATC  200
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  AGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATC  200

seq1  TAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAG  250
      ||| |||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAAATGGATCAAAGAACTTCACATAAAACCAGAGACACTGAAACTTATAG  250

seq1  AGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCAGAGGGGAAAAGTTC  300
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  AGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTC  300

seq1  CTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAGAGAATCGACAAATG  349
       ||||||||||||||||||| |||||||| || | |||||| ||||||||
seq2  ATGAACAGAACAGCAATGGCATGTGCTGTAAGATCGAGAATTGACAAATG  350

seq1  GGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATA  399
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAACA  400

seq1  AGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAA  450

seq1  TCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGA  499
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAGGGGGCTAATATCCAACATATATAAAGAACTCAAGAAGGTGGA  500

seq1  CTTCAGAAAATCAAATAACCCCATTAATAAATGGGGCTCAGAACTGAACA  549
      |||||||||||| || ||||||||||| ||||||||||||||||||||||
seq2  CTTCAGAAAATCGAACAACCCCATTAAAAAATGGGGCTCAGAACTGAACA  550

seq1  AAGAATTC  557
      ||||||||
seq2  AAGAATTC  558

seq1: chr14_123330591_123331729
seq2: B6Ng01-065H18.g_72_1194 (reverse)

seq1  ACAGCTGATTGAGACAAGGGAATCTCAGGCTTCTGTCCTTCGTCCAA-AT  49
      ||||||||||| ||| |||  || || ||||  | |||||||||||| ||
seq2  ACAGCTGATTG-GACCAGG--AT-TCGGGCT--TTTCCTTCGTCCAATAT  44

seq1  CTCT-GCTGCCTGGGGTCAGTGGTGTTGATGTCTCTGCTCTACTGTGCCC  98
      | || |||     | ||||  || | ||| ||||| |||| ||  || ||
seq2  CACTCGCT-----GAGTCACGGGGGGTGA-GTCTCAGCTCAAC--TGGCC  86

seq1  TGCAGGAGGTGACACCTCTTTTTGACACTGGAGTAGATTCCTAGAGATGG  148
      | |||||||   | |||  |||||||||| || |||||||| |||||| |
seq2  TCCAGGAGGGTGCCCCTTCTTTTGACACT-GATTAGATTCC-AGAGAT-G  133

seq1  TGTCGTCCTATCATACTTATCATACATATATCACAACTAAAACAAGGTTT  198
      ||||||||| |||||| ||||||||||||||||| ||  |||||||||| 
seq2  TGTCGTCCTTTCATAC-TATCATACATATATCACCACCTAAACAAGGTTG  182

seq1  GTGTTTTTTTAAATAAAAACTACTTCATTCTAAAATTTATAATACAAGCA  248
        |||||||||||| |||||||||||| ||||||||||||||||||||| 
seq2  TGGTTTTTTTAAAT-AAAACTACTTCA-TCTAAAATTTATAATACAAGCC  230

seq1  TCGTCTGTCCACTTAAAGTGACTTGTCCAGCATTAGAAAGTCAGTCTTTC  298
      |||||  ||||||||||||||| ||||||||| |||||||||||||||  
seq2  TCGTCCTTCCACTTAAAGTGACCTGTCCAGCA-TAGAAAGTCAGTCTTCT  279

seq1  TCTTTGCAACCATGCGCCTGGCCATTTTTTTTTTTTCCTCTGTTCATTCT  348
      |||| | |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAAACCATGCGCCTGGCCATTTTTTTTTTTTCCTCTGTTCATTCT  329

seq1  ACTTGTGCAGTCAACAAAATCTTGGCTCATCATTCCAGAAACAAACATGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTTGTGCAGTCAACAAAATCTTGGCTCATCATTCCAGAAACAAACATGT  379

seq1  TAAAGGCCAAAGTTATTCATGTCGTGGT-AAAAATGG-AAGCCTATTCTT  446
       ||||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  AAAAGGCCAAAGTTATTCATGTCGTGGTAAAAAATGGAAAGCCTATTCTT  429

seq1  TCTATTAAAGTATCCAAATACCCAATGTTTTCTTGGTTTCCCTTCTGCCT  496
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTATTAAAGTATCCAAATACCCAATGTTTTCTTGGTTTCCCCTCTGCCT  479

seq1  TGACTGGGTCGTCAAAGTCTAGACAGGGATGATTACCAGAGGCAGGGCCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGGTCGTCAAAGTCTAGACAGGGATGATTACCAGAGGCAGGGCCA  529

seq1  TGCTGGGGGACATTTG-TTGTTTTTTATGGGACATCTGAATTATCAAATA  595
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGCTGGGGGACATTTGTTTGTTTTTTATGGGACATCTGAATTATCAAATA  579

seq1  GGACATGAGATGATTATTTGGATGAATAACTGATGTGAGGAACTAGTTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGAGATGATTATTTGGATGAATAACTGATGTGAGGAACTAGTTTT  629

seq1  GTTTACACAAAAGATGCTTTGGGTATTTCAAATGAGGATAAGCAAGATTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACACAAAAGATGCTTTGGGTATTTCAAATGAGGATAAGCAAGATTT  679

seq1  TTTTTTTAACCTGTACATGCTACCTACTTGTGAAGCTATACACTCCTCCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAACCTGTACATGCTACCTACTTGTGAAGCTATACACTCCTCCT  729

seq1  AGATGTTCCATCTCTGTATGTACAATCCGTTTTGGCTCAGACAGATCCAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTCCATCTCTGTATGTACAATCCGTTTTGGCTCAGACAGATCCAA  779

seq1  AGTATTTCCCTTACCAATTTCACCTAGTCAATGTAATGAGTCCTGTTTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTCCCTTACCAATTTCACCTAGTCAATGTAATGAGTCCTGTTTAA  829

seq1  AGAATTATGCTGTTTGAGCCACATTATTTTCTTTGCCATGAAAATTAAGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATGCTGTTTGAGCCACATTATTTTCTTTGCCATGAAAATTAAGA  879

seq1  GCAATCAGATTACCTTAAATATTTTGTCAAGAACCAGAAATACAGAGCAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCAGATTACCTTAAATATTTTGTCAAGAACCAGAAATACAGAGCAA  929

seq1  TTCAAGCACTTTAGTTTCTATGCCCATTAAGTAACTGCAAGGCCCTTTTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCACTTTAGTTTCTATGCCCATTAAGTAACTGCAAGGCCCTTTTA  979

seq1  GATAAACACTAATTCCTGACACTGTCCTTTTCAGGAGGATGTCCCCTTGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACACTAATTCCTGACACTGTCCTTTTCAGGAGGATGTCCCCTTGC  1029

seq1  AAAGCAAGAGATCTGTTCCCTTGGGGAAAGAGAACAAGGAAGCTCAGAAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGAGATCTGTTCCCTTGGGGAAAGAGAACAAGGAAGCTCAGAAA  1079

seq1  ATAAGTTACAGGTTTGTTTTTAAATATTAGTTTCTATTGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTACAGGTTTGTTTTTAAATATTAGTTTCTATTGAATTC  1123