BAC Information

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BAC

Clone NameB6Ng01-066M16
Chromosome14 (Build37)
Map Location 47,520,112 - 47,685,270
singlet/doubletdoublet
Overlap geneSamd4
Upstream geneLOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1
Downstream geneGch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066M16.bB6Ng01-066M16.g
ACCDH885869DH885870
length1,1021,128
definitionDH885869|Mus musculus domesticus DNA, BAC clone: B6Ng01-066M16, 5' end.DH885870|Mus musculus domesticus DNA, BAC clone: B6Ng01-066M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,684,157 - 47,685,270)(47,520,112 - 47,521,255)
sequence
gaattcaattattttgtaaaagtttgggtcaggctctagcgctaccatcc
ttggcaggactttctctctctttttaaaaatctgaacaactgatgagttg
gctttttctctcaactttgacctaaacacagattgctctttcaaatagtt
cctgtcaaaccctggggtccgaggcagcagctgagatccaagcagtggtg
ggagaaatgttaggaagttgaaattagtgcctttcattctctgagagtgt
gcagtgactctgggctttgtcttgttctcagtcctggtatttagccaggc
ctacagaaggggatctgagggcactgaataagtacaggaaaagcagaggt
cagtggggagccatgtggcagccaggccctgccccacatgctccaatctc
tccttcctgtgcaacgaatattaactcatttagaccaccggtttcttcga
attgtcgctcaaaggaaactggggtcaatttgaaaaaaaaatgcaaatag
cattttaaacaagagaaacaaaaacacacattagatctgttggccagagc
ctggcatggcagaaatggtttctggggtgctgttgatgggtgtttgccct
cagattttgtggggagagacttaagaaggaaggggagattctgttctttt
atgacttcagaagggaaataaattctaaggcctggataacttagccgccc
tcactggcccatgccatttggggtggtcagaagaatgtattttaaacagt
ttactctgatctcaactaagacagtgtgagtgattttggaagagtgtccc
ggagtggctagtgtttcctctggctggtccagttagaagttagtggatgt
gtgaccagactggataaagagacgaggaatctgtccctatccaaacaagt
cttggcttggtggaggaaagagaagagccaggggaaagctcttgggacac
ttatgtgataccacacctggcagtacacaggtcttccttagcacccagag
tttgaaggtacacttggctctgtcttttctaacttcctctccttgcttgg
ccgtgactgctgctgtctttatcttccactgaactgcaagcagaaactag
tt
gaattcttttcaaagaagatggggctcagtggttaagagcacttgttgct
cttattgagggtctgggttttaaacccagaacctacatggtggcttacaa
ccctccctgacttcagtttcaggagatccaacaggcacccctatggtgca
catatatgcattcaggcaaagaatttatacatacaaaataattttttaaa
tatttaaaaaggaatgctttagaggaaagttagacaaaatcatatattgt
gataagtatccctgcctataaatatcccagtatgggtatacatggagtgt
tttaaaagatgaattctatacattagttagtggtttgcattctttaattg
ttttaatcatcatttaaaagaattgcttgtaaaaagataacattttgcaa
aagctgtcatttaacctgaaattatctcaagaagacctttaagaattttt
cttgcatacttcagctaaatgagaaaataattgtgtctctcttattactc
tttggtattattgctacctgtgccctctcctttgaaggttggaagagcat
gaggttccttgtcagaattctttgttgtttgtttaaacagggcctctctc
tcttcacattcctgttgggggcagaatgagcgatgctagcacatttttca
agatttttgtggcatttgccgatgatttgagcttagttaaaactctaaaa
cccggaacagtaaggtcaaactcgagtctcatgtggttcagatgttcagt
gtccggctgctgaggtgatagtcagtataacgtgtatatacttagctcca
tacacttaccagcaagagttggtgagaatatctgttgctttttaaagcct
ctctcttactttccccctgaaaggaggaagagctctcagtgtttacattt
ttgcaatttcactgaactctgagttagagtggagtgtggtattcattagc
agctcattccttgatagagccaattgtttccctaagacaaaaaaagagca
cttgttggccgggcctgaccttccattccaccctgaccatatgggggtgc
acttggaagggggtacgggcctccaaaatgtgcaaataagagcacctaag
ggttctaggttgaacttgaatggggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_47684157_47685270
seq2: B6Ng01-066M16.b_47_1148 (reverse)

seq1  AACTAGTTTCTTGCCTTGGCAGTTCAGTGGAAGATAAAGACCAGCAGGCA  50
      |||||||||| |||  | |||||||||||||||||||||| ||||| |||
seq2  AACTAGTTTC-TGC--TTGCAGTTCAGTGGAAGATAAAGA-CAGCA-GCA  45

seq1  GTCACGGGCCAAGGCAAGGGAGAGGAAGTTAGGAAAAGACAGAGCCAAGT  100
      ||||| |||||| |||| ||||||||||||| ||||||||||||||||||
seq2  GTCAC-GGCCAA-GCAA-GGAGAGGAAGTTA-GAAAAGACAGAGCCAAGT  91

seq1  GTACCTTCAAACTCTGGGTGCTAAGGAAGACCCTGTGGTACTGCCAGGTG  150
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  GTACCTTCAAACTCTGGGTGCTAAGGAAGA-CCTGT-GTACTGCCAGGTG  139

seq1  TGGTATCACATAAGTGTTCCCAAGAGCTTTCCCCTGGCTCTTCTCTTTCC  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGTATCACATAAGTG-TCCCAAGAGCTTTCCCCTGGCTCTTCTCTTTCC  188

seq1  TCCACCAAGCCAAGACTTGTTTGGATAGGGACAGATTCCTCGTCTCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCAAGCCAAGACTTGTTTGGATAGGGACAGATTCCTCGTCTCTTTA  238

seq1  TCCAGTCTGGTCACACATCCACTAACTTCTAACTGGACCAGCCAGAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCTGGTCACACATCCACTAACTTCTAACTGGACCAGCCAGAGGAA  288

seq1  ACACTAGCCACTCCGGGACACTCTTCCAAAATCACTCACACTGTCTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGCCACTCCGGGACACTCTTCCAAAATCACTCACACTGTCTTAGT  338

seq1  TGAGATCAGAGTAAACTGTTTAAAATACATTCTTCTGACCACCCCAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCAGAGTAAACTGTTTAAAATACATTCTTCTGACCACCCCAAATG  388

seq1  GCATGGGCCAGTGAGGGCGGCTAAGTTATCCAGGCCTTAGAATTTATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGCCAGTGAGGGCGGCTAAGTTATCCAGGCCTTAGAATTTATTTC  438

seq1  CCTTCTGAAGTCATAAAAGAACAGAATCTCCCCTTCCTTCTTAAGTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGAAGTCATAAAAGAACAGAATCTCCCCTTCCTTCTTAAGTCTCT  488

seq1  CCCCACAAAATCTGAGGGCAAACACCCATCAACAGCACCCCAGAAACCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAAAATCTGAGGGCAAACACCCATCAACAGCACCCCAGAAACCAT  538

seq1  TTCTGCCATGCCAGGCTCTGGCCAACAGATCTAATGTGTGTTTTTGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCATGCCAGGCTCTGGCCAACAGATCTAATGTGTGTTTTTGTTTC  588

seq1  TCTTGTTTAAAATGCTATTTGCATTTTTTTTTCAAATTGACCCCAGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTAAAATGCTATTTGCATTTTTTTTTCAAATTGACCCCAGTTTC  638

seq1  CTTTGAGCGACAATTCGAAGAAACCGGTGGTCTAAATGAGTTAATATTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGCGACAATTCGAAGAAACCGGTGGTCTAAATGAGTTAATATTCG  688

seq1  TTGCACAGGAAGGAGAGATTGGAGCATGTGGGGCAGGGCCTGGCTGCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAGGAAGGAGAGATTGGAGCATGTGGGGCAGGGCCTGGCTGCCAC  738

seq1  ATGGCTCCCCACTGACCTCTGCTTTTCCTGTACTTATTCAGTGCCCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCCCCACTGACCTCTGCTTTTCCTGTACTTATTCAGTGCCCTCAG  788

seq1  ATCCCCTTCTGTAGGCCTGGCTAAATACCAGGACTGAGAACAAGACAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTTCTGTAGGCCTGGCTAAATACCAGGACTGAGAACAAGACAAAG  838

seq1  CCCAGAGTCACTGCACACTCTCAGAGAATGAAAGGCACTAATTTCAACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGTCACTGCACACTCTCAGAGAATGAAAGGCACTAATTTCAACTT  888

seq1  CCTAACATTTCTCCCACCACTGCTTGGATCTCAGCTGCTGCCTCGGACCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACATTTCTCCCACCACTGCTTGGATCTCAGCTGCTGCCTCGGACCC  938

seq1  CAGGGTTTGACAGGAACTATTTGAAAGAGCAATCTGTGTTTAGGTCAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTGACAGGAACTATTTGAAAGAGCAATCTGTGTTTAGGTCAAAG  988

seq1  TTGAGAGAAAAAGCCAACTCATCAGTTGTTCAGATTTTTAAAAAGAGAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGAAAAAGCCAACTCATCAGTTGTTCAGATTTTTAAAAAGAGAGA  1038

seq1  GAAAGTCCTGCCAAGGATGGTAGCGCTAGAGCCTGACCCAAACTTTTACA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCCTGCCAAGGATGGTAGCGCTAGAGCCTGACCCAAACTTTTACA  1088

seq1  AAATAATTGAATTC  1114
      ||||||||||||||
seq2  AAATAATTGAATTC  1102

seq1: chr14_47520112_47521255
seq2: B6Ng01-066M16.g_69_1196

seq1  GAATTCTTTTCAAAGAAGATGGGGCTCAGTGGTTAAGAGCACTTGTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCAAAGAAGATGGGGCTCAGTGGTTAAGAGCACTTGTTGCT  50

seq1  CTTATAGAGGGTCTGGGTTTTAAACCCAGAACCTACATGGTGGCTTACAA  100
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGAGGGTCTGGGTTTTAAACCCAGAACCTACATGGTGGCTTACAA  100

seq1  CCCTCCCTGACTTCAGTTTCAGGAGATCCAACAGGCACCCCTATGGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTGACTTCAGTTTCAGGAGATCCAACAGGCACCCCTATGGTGCA  150

seq1  CATATATGCATTCAGGCAAAGAATTTATACATACAAAATAATTTTTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGCATTCAGGCAAAGAATTTATACATACAAAATAATTTTTTAAA  200

seq1  TATTTAAAAAGGAATGCTTTAGAGGAAAGTTAGACAAAATCATATATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAAAGGAATGCTTTAGAGGAAAGTTAGACAAAATCATATATTGT  250

seq1  GATAAGTATCCCTGCCTATAAATATCCCAGTATGGGTATACATGGAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTATCCCTGCCTATAAATATCCCAGTATGGGTATACATGGAGTGT  300

seq1  TTTAAAAGATGAATTCTATACATTAGTTAGTGGTTTGCATTCTTTAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGATGAATTCTATACATTAGTTAGTGGTTTGCATTCTTTAATTG  350

seq1  TTTTAATCATCATTTAAAAGAATTGCTTGTAAAAAGATAACATTTTGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCATCATTTAAAAGAATTGCTTGTAAAAAGATAACATTTTGCAA  400

seq1  AAGCTGTCATTTAACCTGAAATTATCTCAAGAAGACCTTTAAGAATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTCATTTAACCTGAAATTATCTCAAGAAGACCTTTAAGAATTTTT  450

seq1  CTTGCATACTTCAGCTAAATGAGAAAATAATTGTGTCTCTCTTATTACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATACTTCAGCTAAATGAGAAAATAATTGTGTCTCTCTTATTACTC  500

seq1  TTTGGTATTATTGCTACCTGTGCCCTCTCCTTTGAAGGTTGGAAGAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTATTATTGCTACCTGTGCCCTCTCCTTTGAAGGTTGGAAGAGCAT  550

seq1  GAGGTTCCTTGTCAGAATTCTTTGTTG-TTGTTTAAACAGGGCCTCTCTC  599
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAGGTTCCTTGTCAGAATTCTTTGTTGTTTGTTTAAACAGGGCCTCTCTC  600

seq1  TCTTCACATTCCTGTTGGGGGCAGAATGAGCGATGCTAGCACA-TTTTCA  648
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTTCACATTCCTGTTGGGGGCAGAATGAGCGATGCTAGCACATTTTTCA  650

seq1  AGATTTTTGTGGCATTTGCCGATGATTTGAGCTTAGTTAAAACTCTAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTGTGGCATTTGCCGATGATTTGAGCTTAGTTAAAACTCTAAAA  700

seq1  CCCGGAACAGTAAGGTCAAACTCGAGTCTCATGTGGTTCAGATGTTCAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGAACAGTAAGGTCAAACTCGAGTCTCATGTGGTTCAGATGTTCAGT  750

seq1  GTCCGGCTGCTGAGGTGATAGTCAGTATAACGTGTATATACTTAGCTCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGGCTGCTGAGGTGATAGTCAGTATAACGTGTATATACTTAGCTCCA  800

seq1  TACACTTACCAGCAAGAGTTGGTTGAGAATATCTGTTGCTTTTTTAAAGC  848
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  TACACTTACCAGCAAGAGTTGG-TGAGAATATCTGTTGC-TTTTTAAAGC  848

seq1  CTCTCTCTTACTTTCCCCCTG-AAGGAGGAAGACGCTCTCCAGTGTTTAA  897
      ||||||||||||||||||||| ||||||||||| ||||| |||||||| |
seq2  CTCTCTCTTACTTTCCCCCTGAAAGGAGGAAGA-GCTCT-CAGTGTTT-A  895

seq1  CATTTTTGCAATTTCACTGAACTCTGAGTTAGAGTGGAGTGTGGTATTCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGCAATTTCACTGAACTCTGAGTTAGAGTGGAGTGTGGTATTCA  945

seq1  TTAGCAGCTCAGTCCTTGAATAGAGCCGAATTGTTTCCCTAAGACAAAGA  997
      ||||||||||| |||||| |||||||| |||||||||||||||||||| |
seq2  TTAGCAGCTCATTCCTTG-ATAGAGCC-AATTGTTTCCCTAAGACAAAAA  993

seq1  AAGAGGCACTTTGTTGTCCGTGCCCTGACCTTCCCATTCCACCTCTGTAC  1047
      |||| |||| |||||| ||| | ||||||||| |||||||||| |||  |
seq2  AAGA-GCAC-TTGTTGGCCG-GGCCTGACCTT-CCATTCCACC-CTGACC  1038

seq1  ATCATGGGTGTGCACTTGGTAGGGTGGCTACGGTGCCGCCAAGATGTGCC  1097
      || ||||| |||||||||| |||  || ||||| ||| |||| ||||| |
seq2  AT-ATGGGGGTGCACTTGGAAGG--GGGTACGG-GCCTCCAAAATGTG-C  1083

seq1  AAATAAGAGCAACCTAAGGGTTCTAGGTTGAACCTTGGATGGGGAAA  1144
      |||||||||| ||||||||||||||||||||| |||| |||||||||
seq2  AAATAAGAGC-ACCTAAGGGTTCTAGGTTGAA-CTTGAATGGGGAAA  1128