BAC Information

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BAC

Clone NameB6Ng01-067D03
Chromosome14 (Build37)
Map Location 48,685,617 - 48,811,888
singlet/doubletdoublet
Overlap geneMap1lc3-ps2, Peli2
Upstream geneSamd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik
Downstream geneEG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067D03.bB6Ng01-067D03.g
ACCDH886160DH886161
length1,1341,118
definitionDH886160|Mus musculus domesticus DNA, BAC clone: B6Ng01-067D03, 5' end.DH886161|Mus musculus domesticus DNA, BAC clone: B6Ng01-067D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,810,737 - 48,811,888)(48,685,617 - 48,686,749)
sequence
gaattctaggctacgctggccagttctggctggcttctagccactcctgt
cttctgtgggattgcccagtctagtctctacttctgtactatcaacccca
ccctctcccacaggctcaggacctttgagactcaaggatggctgagagtc
ttctacattgaggtctgtatgaacaaatccatctgtaacctcgcatccct
gcaccagcatcactcactggttcagttccctgtgcttgccagggtgatct
ttacctcccacttgtctacagcccactccgtcttcagtgccgccccaggg
ctccacaccttcggagaagggcatccctgaaggtcactggcaacaccagt
gtgttctttcagggttcccctgcttggcccctcatggaccacacctgctg
ccagctgctggccttgctggaagccccaagttctcctcttattccttggg
cccagagcccttaaacacacctttctctcattttctccagaacagttcaa
agctaggagggcgctcactcccttcatttccaaacaccatcagcagatgc
cagacctcctcaccctgcacagccctcctctccagctgcagatgcgcact
tcttactgcctccccagtccaacacttggcagtctcacaaacacctcaaa
cggagcgattcctgaactcattcatctcttcttcccaggaactgtaagac
cccgagcctcctggaacacccttaattcttcaagtcgacggctgttgccc
tgctagcctccttcgcccttactgcatatcccaaccattggaggccagat
caaagcatctagactaacctacatgaacgtcactaagttgtcctctgccc
actcagtctacaacattacagccccttgtttgcacaccagctaatccatc
tgctatattcaccactgtgcagcatgactattttcacagtttcaaagcaa
ccattgatgtgactttctcaatcagacaccccatccatgccttgtgttgg
tccctggaaagcctgcggtacttgccgaaaccgggtgagcagaaacccgg
tgagcagatcttctgctcggcctgcttctgctgtgcttccacttacttgc
agaagaagagtcagcttctgcctgggcagctccc
gaattctctctggactggggtatattttccaaaccatttgaagcatttgg
taagtgtgagtgaactatacctatttaaccagttggccctctgctcttct
gccactgactctcattacacagtcaagtctagtttccaactcataaccct
ccagcctccactaaccacaggcttggattgcaagcctgtgctacacgcct
accccagtcgcctccagatacattcttaggttgttcccagttctcaaacc
ataaatggtgcttgaacaaggcctctgtggtcataacatttcactggatg
gacttccagaagtgagtttgcaaagcctgggctttctgaagaggacttct
acatttcttaatggccaaaagctctacagcaattctttattttgcctcca
tagagcagatgggagactgcagagctaaatgatgagatggagccagtggg
aaggcttggcgcccattcagccttaagaggatggagaggacagagcctgt
ggccactcgaggagaacactccaccactccaggtgtctccttcagccaac
ttctcgagttgttctttgtggctgatttctcactaggctgaattcaggaa
attatcccagggataattatgcatttctgacacttgttttacagttactt
gtaccataatatgatttaaaacaaacaaacaaaatagcgtcttgctatgt
agcccctccatgctgggcttatcatatctagtgctaacagttcaagcact
gatgagtgatcatttaagagtgccccatgactctatacatcatcacattg
gctcacgatttcccaagaacaatcaaagaaacctcccagggcctgttgta
caggagagtgaatctaaaaagccctatttggggaaggaggccagagcttc
ctaagcaaacaagccctcttcatcttcgtttgcagctgacatgtccttgc
ctttctcatctatttctggagccctggaataggtcacatctttctcagcg
tatggtgctcagcagaaaacagtgagttattgacagctcactgcctcaac
tctggacagaagttcttgacttcctccagtcatgatcattggcagctttc
ggagcccataacttcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_48810737_48811888
seq2: B6Ng01-067D03.b_44_1177 (reverse)

seq1  GGGAGCTGCACAGGCAGAAGCTTGACTCCTGTTCTTCCTTGGCAAGGGTT  50
      ||||||||| ||||||||||| |||||| | ||||      |||||   |
seq2  GGGAGCTGCCCAGGCAGAAGC-TGACTCTTCTTCT------GCAAG---T  40

seq1  AGGTGGGAAGCACAGCAGGAAGCAGGGCCGAGCAGAAGGATCTTGCTCAC  100
      | || |||||||||||| |||||| |||||||||||| |||| |||||||
seq2  AAGT-GGAAGCACAGCA-GAAGCA-GGCCGAGCAGAA-GATC-TGCTCAC  85

seq1  CGGGTTTCTGCTCACCCGGTTTCCGGCAGGTACCGGCAGGCTTTCCAGGG  150
      |||||||||||||||||||||| ||||| ||||| |||||||||||||||
seq2  CGGGTTTCTGCTCACCCGGTTT-CGGCAAGTACC-GCAGGCTTTCCAGGG  133

seq1  ACCAACACCAAGGCATGGATGGGGTGTCTGATTGAGAAAGTCACATCAAT  200
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACA-CAAGGCATGGATGGGGTGTCTGATTGAGAAAGTCACATCAAT  182

seq1  GGTTGCTTTGAAACTGTGAAAATAGTCATGCTGCACAGTGGTGAATATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTTTGAAACTGTGAAAATAGTCATGCTGCACAGTGGTGAATATAG  232

seq1  CAGATGGATTAGCTGGTGTGCAAACAAGGGGCTGTAATGTTGTAGACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGATTAGCTGGTGTGCAAACAAGGGGCTGTAATGTTGTAGACTGA  282

seq1  GTGGGCAGAGGACAACTTAGTGACGTTCATGTAGGTTAGTCTAGATGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGAGGACAACTTAGTGACGTTCATGTAGGTTAGTCTAGATGCTT  332

seq1  TGATCTGGCCTCCAATGGTTGGGATATGCAGTAAGGGCGAAGGAGGCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGGCCTCCAATGGTTGGGATATGCAGTAAGGGCGAAGGAGGCTAG  382

seq1  CAGGGCAACAGCCGTCGACTTGAAGAATTAAGGGTGTTCCAGGAGGCTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAACAGCCGTCGACTTGAAGAATTAAGGGTGTTCCAGGAGGCTCG  432

seq1  GGGTCTTACAGTTCCTGGGAAGAAGAGATGAATGAGTTCAGGAATCGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTACAGTTCCTGGGAAGAAGAGATGAATGAGTTCAGGAATCGCTC  482

seq1  CGTTTGAGGTGTTTGTGAGACTGCCAAGTGTTGGACTGGGGAGGCAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGAGGTGTTTGTGAGACTGCCAAGTGTTGGACTGGGGAGGCAGTAA  532

seq1  GAAGTGCGCATCTGCAGCTGGAGAGGAGGGCTGTGCAGGGTGAGGAGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCGCATCTGCAGCTGGAGAGGAGGGCTGTGCAGGGTGAGGAGGTC  582

seq1  TGGCATCTGCTGATGGTGTTTGGAAATGAAGGGAGTGAGCGCCCTCCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCTGCTGATGGTGTTTGGAAATGAAGGGAGTGAGCGCCCTCCTAG  632

seq1  CTTTGAACTGTTCTGGAGAAAATGAGAGAAAGGTGTGTTTAAGGGCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAACTGTTCTGGAGAAAATGAGAGAAAGGTGTGTTTAAGGGCTCTG  682

seq1  GGCCCAAGGAATAAGAGGAGAACTTGGGGCTTCCAGCAAGGCCAGCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAGGAATAAGAGGAGAACTTGGGGCTTCCAGCAAGGCCAGCAGCT  732

seq1  GGCAGCAGGTGTGGTCCATGAGGGGCCAAGCAGGGGAACCCTGAAAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAGGTGTGGTCCATGAGGGGCCAAGCAGGGGAACCCTGAAAGAAC  782

seq1  ACACTGGTGTTGCCAGTGACCTTCAGGGATGCCCTTCTCCGAAGGTGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGTGTTGCCAGTGACCTTCAGGGATGCCCTTCTCCGAAGGTGTGG  832

seq1  AGCCCTGGGGCGGCACTGAAGACGGAGTGGGCTGTAGACAAGTGGGAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGGGCGGCACTGAAGACGGAGTGGGCTGTAGACAAGTGGGAGGT  882

seq1  AAAGATCACCCTGGCAAGCACAGGGAACTGAACCAGTGAGTGATGCTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCACCCTGGCAAGCACAGGGAACTGAACCAGTGAGTGATGCTGGT  932

seq1  GCAGGGATGCGAGGTTACAGATGGATTTGTTCATACAGACCTCAATGTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGATGCGAGGTTACAGATGGATTTGTTCATACAGACCTCAATGTAG  982

seq1  AAGACTCTCAGCCATCCTTGAGTCTCAAAGGTCCTGAGCCTGTGGGAGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCTCAGCCATCCTTGAGTCTCAAAGGTCCTGAGCCTGTGGGAGAG  1032

seq1  GGTGGGGTTGATAGTACAGAAGTAGAGACTAGACTGGGCAATCCCACAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGTTGATAGTACAGAAGTAGAGACTAGACTGGGCAATCCCACAGA  1082

seq1  AGACAGGAGTGGCTAGAAGCCAGCCAGAACTGGCCAGCGTAGCCTAGAAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGAGTGGCTAGAAGCCAGCCAGAACTGGCCAGCGTAGCCTAGAAT  1132

seq1  TC  1152
      ||
seq2  TC  1134

seq1: chr14_48685617_48686749
seq2: B6Ng01-067D03.g_67_1184

seq1  GAATTCTCTCTGGACTGGGGTATATTTTCCAAACCATTTGAAGCATTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGGACTGGGGTATATTTTCCAAACCATTTGAAGCATTTGG  50

seq1  TAAGTGTGAGTGAACTATACCTATTTAACCAGTTGGCCCTCTGCTCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTGAGTGAACTATACCTATTTAACCAGTTGGCCCTCTGCTCTTCT  100

seq1  GCCACTGACTCTCATTACACAGTCAAGTCTAGTTTCCAACTCATAACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGACTCTCATTACACAGTCAAGTCTAGTTTCCAACTCATAACCCT  150

seq1  CCAGCCTCCACTAACCACAGGCTTGGATTGCAAGCCTGTGCTACACGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCCACTAACCACAGGCTTGGATTGCAAGCCTGTGCTACACGCCT  200

seq1  ACCCCAGTCGCCTCCAGATACATTCTTAGGTTGTTCCCAGTTCTCAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGTCGCCTCCAGATACATTCTTAGGTTGTTCCCAGTTCTCAAACC  250

seq1  ATAAATGGTGCTTGAACAAGGCCTCTGTGGTCATAACATTTCACTGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGGTGCTTGAACAAGGCCTCTGTGGTCATAACATTTCACTGGATG  300

seq1  GACTTCCAGAAGTGAGTTTGCAAAGCCTGGGCTTTCTGAAGAGGACTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCAGAAGTGAGTTTGCAAAGCCTGGGCTTTCTGAAGAGGACTTCT  350

seq1  ACATTTCTTAATGGCCAAAAGCTCTACAGCAATTCTTTATTTTGCCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTTAATGGCCAAAAGCTCTACAGCAATTCTTTATTTTGCCTCCA  400

seq1  TAGAGCAGATGGGAGACTGCAGAGCTAAATGATGAGATGGAGCCAGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCAGATGGGAGACTGCAGAGCTAAATGATGAGATGGAGCCAGTGGG  450

seq1  AAGGCTTGGCGCCCATTCAGCCTTAAGAGGATGGAGAGGACAGAGCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTGGCGCCCATTCAGCCTTAAGAGGATGGAGAGGACAGAGCCTGT  500

seq1  GGCCACTCGAGGAGAACACTCCACCACTCCAGGTGTCTCCTTCAGCCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTCGAGGAGAACACTCCACCACTCCAGGTGTCTCCTTCAGCCAAC  550

seq1  TTCTCGAGTTGTTCTTTGTGGCTGATTTCTCACTAGGCTGAATTCAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGAGTTGTTCTTTGTGGCTGATTTCTCACTAGGCTGAATTCAGGAA  600

seq1  ATTATCCCAGGGATAATTATGCATTTCTGACACTTGTTTTACAGTTACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCCAGGGATAATTATGCATTTCTGACACTTGTTTTACAGTTACTT  650

seq1  GTACCATAATATGATTTAAAACAAACAAACAAAATAGCGTCTTGCTATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATAATATGATTTAAAACAAACAAACAAAATAGCGTCTTGCTATGT  700

seq1  AGCCCCTCCATGCTGGGCTTATCATATCTAGTGCTAACAGTTCAAGCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTCCATGCTGGGCTTATCATATCTAGTGCTAACAGTTCAAGCACT  750

seq1  GATGAGTGATCATTTAAGAGTGCCCCATGACTCTATACATCATCACATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTGATCATTTAAGAGTGCCCCATGACTCTATACATCATCACATTG  800

seq1  GCTCACGATTTCCCAAGAACAATCAAAGAAACCTCCCAGGGCCTGTTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACGATTTCCCAAGAACAATCAAAGAAACCTCCCAGGGCCTGTTGTA  850

seq1  CAGGAGAGTGAATCTAAAAAGCCCTATTTGGGGAAGGAGGCCAGAGCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGTGAATCTAAAAAGCCCTATTTGGGGAAGGAGGCCAGAGCTTC  900

seq1  CTAAGCAAACAAGCCCTCTTCATCTTCGTTTGCAGCTGACCATGTCCTTG  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTAAGCAAACAAGCCCTCTTCATCTTCGTTTGCAGCTGA-CATGTCCTTG  949

seq1  CCTTTCTCATCTATTTCTGGAGCCCCTGGAATAGGTCACATCCTTCTCAG  1000
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  CCTTTCTCATCTATTTCTGGAG-CCCTGGAATAGGTCACATCTTTCTCAG  998

seq1  CGTATGGTTGCTCAGCAGAAAACAGTGAGTTATTGACCAGGCTCACTGCC  1050
      ||||||| |||||||||||||||||||||||||||||   |||||||| |
seq2  CGTATGG-TGCTCAGCAGAAAACAGTGAGTTATTGAC--AGCTCACTG-C  1044

seq1  CTCAAACTCTGGACCAGAAGTTCTTGACCTTCCTCCAGTCCATGGATTCA  1100
      ||| ||||||||| ||||||||||||| ||||||||||| ||||   |||
seq2  CTC-AACTCTGGA-CAGAAGTTCTTGA-CTTCCTCCAGT-CATG--ATCA  1088

seq1  TTTGGCAGCTTTCGGAAGCCCATAAACTTCTTC  1133
       |||||||||||||| ||||||| |||||||||
seq2  -TTGGCAGCTTTCGG-AGCCCAT-AACTTCTTC  1118