BAC Information

Click to search

BAC

Clone NameB6Ng01-067I24
Chromosome14 (Build37)
Map Location 49,514,028 - 49,642,776
singlet/doubletdoublet
Overlap geneExoc5
Upstream gene4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972
Downstream gene4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067I24.bB6Ng01-067I24.g
ACCDH886413DH886414
length1,1351,081
definitionDH886413|Mus musculus domesticus DNA, BAC clone: B6Ng01-067I24, 5' end.DH886414|Mus musculus domesticus DNA, BAC clone: B6Ng01-067I24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,641,626 - 49,642,776)(49,514,028 - 49,515,121)
sequence
gaattcacttcaacacaatgtattttgcgcttctctaataacagggtgtg
cagagtgctagaaattaattaggcttaatttttacatattgtttacatcc
agtaaagaaaggctatagattacttaactcagcacaatatattggcagaa
tgtataaaagtggtctatgctataaaatgtcaaggagcataaatggaggt
aagaataattctgcttaggaattgagtaatgaagttttgagagaaaaata
ttcaaaaataaagctggaaaggaatacatttatgttaaagttttcagctt
cattcttttgggtttactgctttgtaactatagtataataacaacatatt
ccctgacttccaatctccttaacatagttgataacctgaccctgtaacct
gttaagtggggatctcagatttaacattttaaaaatgaaagtctttagcc
aggcatggtggttcacgcctgtaatcccagcatgcaagatgccaaggcag
gggtcactatgagtttgaggccagcctagactatatagtgatttttgagt
aacctaaaataataaaacaaagaaactgtattcctccaacagtgatcttc
tcttaggtttttaaggaagttgttagttaccaaacccagaaactgcttta
accttcctgttctcattgctaatagcaagttcattagcaaacactgtagg
tatacatccaaatataatttatctactttgtttcatctctacggatacaa
tcccactttgagcattgtcatcttctaactggttcctgtgttcattcttg
ccttccctagtttctatgcaatagccagcttaattgttacttcctttttt
tttttaaggtttatttattttatacatatgagtatgctgttgctgtcttc
agacacaccagaagagggcatcagatcccattacagatggttgtgagcca
ccatgtggttgctgggaatgaactcagacctctggaagagcagtcagtgc
tcttaaacgctgagcatctcgcagccctaattgtatttcttatgatgact
cctcagtgattatactctaagaggataaaacaactactaaacaattgatc
ccagtgtgcctctatagatttctcaccatgctgca
gaattcttcactccagagcagccagatggccctttagtcatgatggcaca
cagttaataacttttacttattaaaaattatgagaaacaagacaacaata
gtccgtttttccccctgcggtggagtgagatataaacatcaactcttaac
attatttaaaataactacagtaatagaatgtgaagcagaattcccaatag
gtttaatgggttattttttaaggctctgttgtttaaaattactttgcttc
actctttttaagtgaataccagctaaatgaagactgctgtcattaatggt
ggataatgacctacagtgtggaggaatttagaaaagggagacaatcactt
agcaccccagtggtgcccagcggctagacaattgacatccaaccccaggt
aaacagacagtagtgttccatttgcacagggcaaaccgaggagttgtgta
aaggtgccggggctatcaagttctaacaggatttgaacctctgtcagctg
cagcccagtatacctgtcattccagtaccaagtttccgatgtttctcatc
aaacaataagacattaattgactgaaggggtgagaggaaggagaagctgg
gttgaaaggtggctgtgagcaaggcttgtgagagtgggcagagaggcagg
tctttggaatgttgttagcagcaggagttgtcaatgagagcaagtaatct
agaaacaaaacatggcttgcaaaaagaggaggtgtgctcttcaggataca
gcatcgctgcttctgcgtggtgcgtccctccttctttctcccaaccaata
gcaccttcgtgctgccttagcacccagccaagacacccccctgagtccca
gaatagcatcaatatcagaccaagatgctgttgctaggaccccagtccct
tttgtcaatggcatcttcatcttataacacatctccaggccttctgtgac
cctctgccatcgtgggcttagcacagtcctctactggagtttgttcaagg
caatgtctcctccttcttcctttccttcggctcctccctcttcatcatct
caacttcccccctctctccctcccttctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_49641626_49642776
seq2: B6Ng01-067I24.b_49_1183 (reverse)

seq1  TGCAGCATGGTGAGAAATCTATAGAGGCACACTATGGATCATATTGTTTT  50
      |||||||||||||||||||||||||||||||||  |||||| ||||||| 
seq2  TGCAGCATGGTGAGAAATCTATAGAGGCACACT-GGGATCA-ATTGTTT-  47

seq1  AAGTAGTTTGTTTTTATTCCCTCTAAGAGTAATAATCACTGAGGAGTCAT  100
       |||||||   ||||||  ||||| ||||| |||||||||||||||||||
seq2  -AGTAGTT--GTTTTAT--CCTCTTAGAGT-ATAATCACTGAGGAGTCAT  91

seq1  CAATAAGAAAATAACAATTAGGGCTGGCGAGATGGCTCAGCGGTTAAGAG  150
      | ||||||||   |||||||||||| ||||||| |||||||| |||||||
seq2  C-ATAAGAAA--TACAATTAGGGCT-GCGAGAT-GCTCAGCGTTTAAGAG  136

seq1  CACTGACTGCTCTTCCAGAGGTCTTGAGTTCAATTCCCAGCAACCACATG  200
      ||||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  CACTGACTGCTCTTCCAGAGGTC-TGAGTTC-ATTCCCAGCAACCACATG  184

seq1  GTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTC  234

seq1  TGAAGACAGCAACAGCATACTCATATGTATAAAATAAATAAACCTTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGCAACAGCATACTCATATGTATAAAATAAATAAACCTTAAAA  284

seq1  AAAAAAAGGAAGTAACAATTAAGCTGGCTATTGCATAGAAACTAGGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGGAAGTAACAATTAAGCTGGCTATTGCATAGAAACTAGGGAAG  334

seq1  GCAAGAATGAACACAGGAACCAGTTAGAAGATGACAATGCTCAAAGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAATGAACACAGGAACCAGTTAGAAGATGACAATGCTCAAAGTGGG  384

seq1  ATTGTATCCGTAGAGATGAAACAAAGTAGATAAATTATATTTGGATGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATCCGTAGAGATGAAACAAAGTAGATAAATTATATTTGGATGTAT  434

seq1  ACCTACAGTGTTTGCTAATGAACTTGCTATTAGCAATGAGAACAGGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAGTGTTTGCTAATGAACTTGCTATTAGCAATGAGAACAGGAAGG  484

seq1  TTAAAGCAGTTTCTGGGTTTGGTAACTAACAACTTCCTTAAAAACCTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCAGTTTCTGGGTTTGGTAACTAACAACTTCCTTAAAAACCTAAG  534

seq1  AGAAGATCACTGTTGGAGGAATACAGTTTCTTTGTTTTATTATTTTAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATCACTGTTGGAGGAATACAGTTTCTTTGTTTTATTATTTTAGGT  584

seq1  TACTCAAAAATCACTATATAGTCTAGGCTGGCCTCAAACTCATAGTGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAAAATCACTATATAGTCTAGGCTGGCCTCAAACTCATAGTGACC  634

seq1  CCTGCCTTGGCATCTTGCATGCTGGGATTACAGGCGTGAACCACCATGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTGGCATCTTGCATGCTGGGATTACAGGCGTGAACCACCATGCC  684

seq1  TGGCTAAAGACTTTCATTTTTAAAATGTTAAATCTGAGATCCCCACTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAAGACTTTCATTTTTAAAATGTTAAATCTGAGATCCCCACTTAA  734

seq1  CAGGTTACAGGGTCAGGTTATCAACTATGTTAAGGAGATTGGAAGTCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTACAGGGTCAGGTTATCAACTATGTTAAGGAGATTGGAAGTCAGG  784

seq1  GAATATGTTGTTATTATACTATAGTTACAAAGCAGTAAACCCAAAAGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGTTGTTATTATACTATAGTTACAAAGCAGTAAACCCAAAAGAAT  834

seq1  GAAGCTGAAAACTTTAACATAAATGTATTCCTTTCCAGCTTTATTTTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGAAAACTTTAACATAAATGTATTCCTTTCCAGCTTTATTTTTGA  884

seq1  ATATTTTTCTCTCAAAACTTCATTACTCAATTCCTAAGCAGAATTATTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTCTCTCAAAACTTCATTACTCAATTCCTAAGCAGAATTATTCT  934

seq1  TACCTCCATTTATGCTCCTTGACATTTTATAGCATAGACCACTTTTATAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCATTTATGCTCCTTGACATTTTATAGCATAGACCACTTTTATAC  984

seq1  ATTCTGCCAATATATTGTGCTGAGTTAAGTAATCTATAGCCTTTCTTTAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCCAATATATTGTGCTGAGTTAAGTAATCTATAGCCTTTCTTTAC  1034

seq1  TGGATGTAAACAATATGTAAAAATTAAGCCTAATTAATTTCTAGCACTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTAAACAATATGTAAAAATTAAGCCTAATTAATTTCTAGCACTCT  1084

seq1  GCACACCCTGTTATTAGAGAAGCGCAAAATACATTGTGTTGAAGTGAATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCCTGTTATTAGAGAAGCGCAAAATACATTGTGTTGAAGTGAATT  1134

seq1  C  1151
      |
seq2  C  1135

seq1: chr14_49514028_49515121
seq2: B6Ng01-067I24.g_69_1149

seq1  GAATTCTTCACTCCAGAGCAGCCAGATGGCCCTTTAGTCATGATGGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACTCCAGAGCAGCCAGATGGCCCTTTAGTCATGATGGCACA  50

seq1  CAGTTAATAACTTTTACTTATTAAAAATTATGAGAAACAAGACAACAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAATAACTTTTACTTATTAAAAATTATGAGAAACAAGACAACAATA  100

seq1  GTCCGTTTTTCCCCCTGCGGTGGAGTGAGATATAAACATCAACTCTTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGTTTTTCCCCCTGCGGTGGAGTGAGATATAAACATCAACTCTTAAC  150

seq1  ATTATTTAAAATAACTACAGTAATAGAATGTGAAGCAGAATTCCCAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAAAATAACTACAGTAATAGAATGTGAAGCAGAATTCCCAATAG  200

seq1  GTTTAATGGGTTATTTTTTAAGGCTCTGTTGTTTAAAATTACTTTGCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATGGGTTATTTTTTAAGGCTCTGTTGTTTAAAATTACTTTGCTTC  250

seq1  ACTCTTTTTAAGTGAATACCAGCTAAATGAAGACTGCTGTCATTAATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTTAAGTGAATACCAGCTAAATGAAGACTGCTGTCATTAATGGT  300

seq1  GGATAATGACCTACAGTGTGGAGGAATTTAGAAAAGGGAGACAATCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATGACCTACAGTGTGGAGGAATTTAGAAAAGGGAGACAATCACTT  350

seq1  AGCACCCCAGTGGTGCCCAGCGGCTAGACAATTGACATCCAACCCCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCCAGTGGTGCCCAGCGGCTAGACAATTGACATCCAACCCCAGGT  400

seq1  AAACAGACAGTAGTGTTCCATTTGCACAGGGCAAACCGAGGAGTTGTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACAGTAGTGTTCCATTTGCACAGGGCAAACCGAGGAGTTGTGTA  450

seq1  AAGGTGCCGGGGCTATCAAGTTCTAACAGGATTTGAACCTCTGTCAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCCGGGGCTATCAAGTTCTAACAGGATTTGAACCTCTGTCAGCTG  500

seq1  CAGCCCAGTATACCTGTCATTCCAGTACCAAGTTTCCGATGTTTCTCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGTATACCTGTCATTCCAGTACCAAGTTTCCGATGTTTCTCATC  550

seq1  AAACAATAAGACATTAATTGACTGAAGGGGTGAGAGGAAGGAGAAGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATAAGACATTAATTGACTGAAGGGGTGAGAGGAAGGAGAAGCTGG  600

seq1  GTTGAAAGGTGGCTGTGAGCAAGGCTTGTGAGAGTGGGCAGAGAGGCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAGGTGGCTGTGAGCAAGGCTTGTGAGAGTGGGCAGAGAGGCAGG  650

seq1  TCTTTGGAATGTTGTTAGCAGCAGGAGTTGTCAATGAGAGCAAGTAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGAATGTTGTTAGCAGCAGGAGTTGTCAATGAGAGCAAGTAATCT  700

seq1  AGAAACAAAACATGGCTTGCAAAAAGAGGAGGTGTGCTCTTCAGGATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAAACATGGCTTGCAAAAAGAGGAGGTGTGCTCTTCAGGATACA  750

seq1  GCATCGCTGCTTCTGCGTGGTGCGTCCCTCCTTCTTTCTCCCAACCAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGCTGCTTCTGCGTGGTGCGTCCCTCCTTCTTTCTCCCAACCAATA  800

seq1  GCACCTTCGTGCTGCCTTAGCACCCAGCCAAGACACCCCCCTGAGTCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTCGTGCTGCCTTAGCACCCAGCCAAGACACCCCCCTGAGTCCCA  850

seq1  GAATAGCATCAATATCAGACCCAGATGCTGTTGCTAGGACCCCAGTCCC-  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  GAATAGCATCAATATCAGACCAAGATGCTGTTGCTAGGACCCCAGTCCCT  900

seq1  TTTGTCAATGGCATCTTCATCTTATAACACCATCTCCAGGCCTTCTGTGA  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTGTCAATGGCATCTTCATCTTATAACA-CATCTCCAGGCCTTCTGTGA  949

seq1  CCCTCTGCCACCGTGGGCTTAGCACAGTCCTCTACTGGAGTTTGTCTCAG  999
      |||||||||| |||||||||||||||||||||||||||||||||| ||| 
seq2  CCCTCTGCCATCGTGGGCTTAGCACAGTCCTCTACTGGAGTTTGT-TCA-  997

seq1  GGGCAATGTCTCCTTCCTTCTCTCCTTTCCTTCCTGCCTCCCTCCCTCTT  1049
       |||||||||||| ||||||| |||||||||||  | || ||||||||||
seq2  AGGCAATGTCTCC-TCCTTCT-TCCTTTCCTTC--GGCT-CCTCCCTCTT  1042

seq1  TCCTTCCTTCCTCCTACCTTCTCCCCCTCTCTCCCTCCCTT-TCTT  1094
            | || ||  | |||| ||||||||||||||||||| ||||
seq2  ------CATCATCTCAACTTC-CCCCCTCTCTCCCTCCCTTCTCTT  1081