BAC Information

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BAC

Clone NameB6Ng01-067K22
Chromosome9 (Build37)14 (Build37)
Map Location 58,911,373 - 58,912,57629,352,535 - 29,352,694
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186
Downstream geneEG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067K22.bB6Ng01-067K22.g
ACCDH886490DH886491
length1,180870
definitionDH886490|Mus musculus domesticus DNA, BAC clone: B6Ng01-067K22, 5' end.DH886491|Mus musculus domesticus DNA, BAC clone: B6Ng01-067K22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(58,911,373 - 58,912,576)(29,352,535 - 29,352,694)
sequence
gaattcttttaacaatttcccgttctaaactaagaaacattttttgccaa
aaaaaataaaataaaataaaataaagagctggaagctacaaaggcttggg
acggtattaaacagtactgttttttgtttgtttgtttgtttatttttggt
tttttttttaacttttgaaagtgtgccagaatattgtcttctctgggtta
tggtttttccctttccccatcacttaccaattgagaagaagttaaaaggt
catatctttctcatcccatcaccaaagtaaacagttctctaattaccaca
aagggcagatgttcccaaggaattatttattgtttattagcaaatggcaa
aggtagtaaaagaaggttctgtgtcacaatatgaattcttggcagtgaca
tttacgtaccctaagcctgaggcaagaaagaagaaaaaacaaagaaaaat
tgctatatccattatatgtttaagagattgtgaccatctgcctgctaaaa
tgtatggccacagtggatctgaagagtagattttgacatttttttatttt
aatgtttttacttgtatgatgttttggctgcatctatgcctgtgcatcat
gtgtgcctggtacccacaaaagccgaaagagagtgtcagatctccaggaa
cttggggttacagatgactgtgagcccttgtgtgggtgctgggacaggac
ctgagtcctctagaagaagacttctagccagtgctaagcagccagtgctc
tttgccactgcactgtttctgcagtacccaaagaatagattttttaaaaa
catgcttatgtggtctcacctgatatcccaggctagcttcaaacatctga
caattctccagcctcagcctcccagatactgagatggtaggtgagccacc
tcacctctacaaaatagctttttgtaattatgaccttcacaattcatttg
tctcacaaatgcgtgccactgggcaccattagaaaacagctttaaacaga
gcacaaataccatgacaatgtccttgtgttttaaagctagcagaagagtc
tcagcttcatgtgtcagttcacttagcagtaatactttgcataatgatca
ctaactccaagaattcaatgctgtaatgccttagattagcctgatcatct
cccactccctggtcgatcagctgcaatgct
gaattcacaggaacagaatctcccaaagggctggttaacactcagatgcc
agatcccacacttggaatgtctgaagcagaggtctagtgtgacatgaggt
ttgctgcagattgggatgcttcagagttggagacctttcctctagaacag
cagctatttgctttgctagcctcaccatttgacctgttttgtttgttttg
ttttctggaggaaactgacaaattaaaaaatgatcatgctgccattttgg
aaaacatcctggcagttccttgagatactaaacacagttcctacaagagc
tggaagttctgttcctagatgggcaaagggagatgagaggggctggagag
atgagtcagcagctggcagcactggctgctcttccagaggatccaggctt
gactgcgggtgggcacccacatggcagctatctgtagctcccacctgagg
gatctgatgccctcatctagcttctacaggctccaggtatacactcggta
cacagacatacatgcagacacaacatccatacacataaaaactgaagagg
aggaaacgaaaatggaagttttcacaaagagttgcacccaaacacctgtc
taagcattatttatgatagtctaaatacagaaatagcttaaatgtccatt
aacagataagcaaatgaataaagaaaacacaatatattcatgcaatggga
tgttgtgctgactttaaaaggaatgaaattctaatacacagagcaatgtg
gatgaccactaaggacattatactaagtgtaataagccaaggggtggatt
atcacaaaggggtgaatattgtatgatccatttatatgaaattccagaac
agacagttttatagagacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_58911373_58912576
seq2: B6Ng01-067K22.b_49_1228

seq1  GAATTCTTTTAACAATTTCCCGTTCTAAACTAAGAAACATTTTTTGCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAACAATTTCCCGTTCTAAACTAAGAAACATTTTTTGCCAA  50

seq1  AAAAAATAAAATAAAATAAAATAAAGAGCTGGAAGCTACAAAGGCTTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAATAAAATAAAATAAAGAGCTGGAAGCTACAAAGGCTTGGG  100

seq1  ACGGTATTAAACAGTACTGTTTTTTGTTTGTTTGTTTGTTTATTTTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTATTAAACAGTACTGTTTTTTGTTTGTTTGTTTGTTTATTTTTGGT  150

seq1  TTTTTTTTTAACTTTTGAAAGTGTGCCAGAATATTGTCTTCTCTGGGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAACTTTTGAAAGTGTGCCAGAATATTGTCTTCTCTGGGTTA  200

seq1  TGGTTTTTCCCTTTCCCCATCACTTACCAATTGAGAAGAAGTTAAAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTCCCTTTCCCCATCACTTACCAATTGAGAAGAAGTTAAAAGGT  250

seq1  CATATCTTTCTCATCCCATCACCAAAGTAAACAGTTCTCTAATTACCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTTTCTCATCCCATCACCAAAGTAAACAGTTCTCTAATTACCACA  300

seq1  AAGGGCAGATGTTCCCAAGGAATTATTTATTGTTTATTAGCAAATGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAGATGTTCCCAAGGAATTATTTATTGTTTATTAGCAAATGGCAA  350

seq1  AGGTAGTAAAAGAAGGTTCTGTGTCACAATATGAATTCTTGGCAGTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTAAAAGAAGGTTCTGTGTCACAATATGAATTCTTGGCAGTGACA  400

seq1  TTTACGTACCCTAAGCCTGAGGCAAGAAAGAAGAAAAAACAAAGAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGTACCCTAAGCCTGAGGCAAGAAAGAAGAAAAAACAAAGAAAAAT  450

seq1  TGCTATATCCATTATATGTTTAAGAGATTGTGACCATCTGCCTGCTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATATCCATTATATGTTTAAGAGATTGTGACCATCTGCCTGCTAAAA  500

seq1  TGTATGGCCACAGTGGATCTGAAGAGTAGATTTTGACATTTTTTTATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGCCACAGTGGATCTGAAGAGTAGATTTTGACATTTTTTTATTTT  550

seq1  AATGTTTTTACTTGTATGATGTTTTGGCTGCATCTATGCCTGTGCATCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTTACTTGTATGATGTTTTGGCTGCATCTATGCCTGTGCATCAT  600

seq1  GTGTGCCTGGTACCCACAAAAGCCGAAAGAGAGTGTCAGATCTCCAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCTGGTACCCACAAAAGCCGAAAGAGAGTGTCAGATCTCCAGGAA  650

seq1  CTTGGGGTTACAGATGACTGTGAGCCCTTGTGTGGGTGCTGGGACAGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGTTACAGATGACTGTGAGCCCTTGTGTGGGTGCTGGGACAGGAC  700

seq1  CTGAGTCCTCTAGAAGAAGACTTCTAGCCAGTGCTAAGCAGCCAGTGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCCTCTAGAAGAAGACTTCTAGCCAGTGCTAAGCAGCCAGTGCTC  750

seq1  TTTGCCACTGCACTGTTTCTGCAGTACCCAAAGAATAGATTTTTTAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCACTGCACTGTTTCTGCAGTACCCAAAGAATAGATTTTTTAAAAA  800

seq1  CATGCTTATGTGGTCTCACCTGATATCCCAGGCTAGCTTCAAACATCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTATGTGGTCTCACCTGATATCCCAGGCTAGCTTCAAACATCTGA  850

seq1  CAATTCTCCAGCCTCAGCCTCCCAGATACTGAGATGGTAGGTGAGCCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTCCAGCCTCAGCCTCCCAGATACTGAGATGGTAGGTGAGCCACC  900

seq1  TCACCTCTACAAAATAGCTTTTTGTAATTATGACCTTCACAATTCATTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCTACAAAATAGCTTTTTGTAATTATGACCTTCACAATTCATTTG  950

seq1  TCTCACAAATGCGTGCCACTGGGCACCATTAG-AAACAGCTTTAAACAGA  999
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTCACAAATGCGTGCCACTGGGCACCATTAGAAAACAGCTTTAAACAGA  1000

seq1  GCACAAATACCATGACAAAGGTCCTTGTGTTTTAAAGCTAGCAGAAGGAA  1049
      |||||||||||||||| || |||||||||||||||||||||||||||  |
seq2  GCACAAATACCATGAC-AATGTCCTTGTGTTTTAAAGCTAGCAGAAG--A  1047

seq1  GTCTCAGCTTCCATGGTGGTTCCAGTTCACTTAGCAGTAAATACTTTTGC  1099
      |||||||||| |||    ||  |||||||||||||||| ||||| |||||
seq2  GTCTCAGCTT-CAT----GTGTCAGTTCACTTAGCAGT-AATAC-TTTGC  1090

seq1  ATAAATGATCACTAAACTCCAAAGAAATCCATGCTGTTATTGCCCTAGAA  1149
      || |||||||||| |||||| ||||| || |||||| || |||| |||| 
seq2  AT-AATGATCACT-AACTCC-AAGAATTCAATGCTG-TAATGCCTTAGA-  1135

seq1  GTGAAAGCTGGGATCCATCCCCACACTCCTCTGTCTAGATCAGGGCTGCA  1199
           |||   ||| |||| || ||||||   |||  |||||  ||||||
seq2  ---TTAGC-CTGAT-CATCTCC-CACTCCCTGGTC--GATCA--GCTGCA  1175

seq1  ATGCT  1204
      |||||
seq2  ATGCT  1180

seq1: chr14_29352535_29352694
seq2: B6Ng01-067K22.g_252_493

seq1  TTTGTTTGTTTTGTTTTCTGG-----------------------GTTTGT  27
      |||||||||||||||||||||                       | |  |
seq2  TTTGTTTGTTTTGTTTTCTGGAGGAAACTGACAAATTAAAAAATGATCAT  50

seq1  TTTG---TTTTTGTCCCCACCCT------------------TAATC-CAG  55
        ||   |||| |    || |||                  ||| | |||
seq2  GCTGCCATTTTGGAAAACATCCTGGCAGTTCCTTGAGATACTAAACACAG  100

seq1  TT--TAGCAAAA---------------CCTAAAT--GCTA----------  76
      ||  || ||| |               |||| ||  || |          
seq2  TTCCTA-CAAGAGCTGGAAGTTCTGTTCCTAGATGGGCAAAGGGAGATGA  149

seq1  ---GGTCTGGAAAGAT--CTCAGTAGTTAAGTGTACTCACTGCTCTTCCA  121
         || ||||| ||||   |||| || |    | |||  |||||||||||
seq2  GAGGGGCTGGAGAGATGAGTCAGCAGCTGGCAGCACTGGCTGCTCTTCCA  199

seq1  GAGGACCCAGGTTCAAATCC----CAGCACCCACATGGCAGCT  160
      ||||| ||||| |  | | |      |||||||||||||||||
seq2  GAGGATCCAGGCTTGACTGCGGGTGGGCACCCACATGGCAGCT  242