BAC Information

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BAC

Clone NameB6Ng01-068L15
Chromosome14 (Build37)
Map Location 85,654,289 - 85,793,539
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603, LOC100043301, EG629815, LOC100043306, LOC100043778
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068L15.bB6Ng01-068L15.g
ACCDH887228DH887229
length1,1411,020
definitionDH887228|Mus musculus domesticus DNA, BAC clone: B6Ng01-068L15, 5' end.DH887229|Mus musculus domesticus DNA, BAC clone: B6Ng01-068L15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,654,289 - 85,655,444)(85,792,519 - 85,793,539)
sequence
gaattcttagagactgagccaccaactaaaagcttacaaagactggactg
aggccccagggcacatatgtagaagacctgcaggtcagtctccaactgga
acaagggctgtccctaaaactgtaacctgattgtggaatccttcagcaac
aaggttgccttgtctggcctcagtgggagataagacacacctaattctcc
ctacagagagttgatgtaagatgatccctgtctgaggaaccctctcagag
cagggcagatggggcaagtactctgtaaggagacaacagggagggggcag
agtttgggatataaacaaacaaacaaacaaacaaacaaacctcttacctg
agtatgctttccagcagttctgaaacataaggtgcattctaattattata
actgtaatttctctccaaatctttctaaccatacttttccttcttcccga
atctccttcagacatcatgatggcctttgcaactgtttcattttcttgtt
tccttgcttggttttatgaaatccactgagtttaacctgtattacctgtt
ttgcccatggccttggaactgtccagataggctcctcagtggatgcttta
caataaataatggggaaagcagagatttcttggctgatcacagtgttgag
aaaaagtgctggtttgagtattgtcccgcttccttcatgaggacatttat
atcatgcactctctaaagcttagggaatgttatgaagaaaagggtgtgga
aggaaagtcctggaacaggaaagagggagagagactatgaaatataagcc
attgtctaccctcagctgatttagttcctccaccaagaaagggcaagtgt
atatagtggtagtattgcttgaaatacaaagaagacaatgcaccaagggc
aagggattcacaagaagctaacatactcattggtagtgcaaattatgcag
aagtcaggagttggtaaagtaattgagttttaaaacatgctagtttacat
gggagaagaacccaggataaaacagatgaatttataagaatatccggaca
cgcttacttctatgggtggaaaagtagacatacataaaattcactaaata
atacagcaacttcacttacttgccattgcttagaatcaaaa
gaattcagctgaaatagaaacaagaagcaggagttatcacagggaaaggg
gggcttgacctcccgtcattattaattgattttactcaaaataattttta
atcttttcatgagaagtgataagctttccatttctgagcaagatacacgc
tgaaggacttggaagctgcaaatttagtatcctatcccttaaggataagc
tggaaggtctgtttgctctcacattggtgtgcagattttatatattcctc
taagttcctggaaaaggacatttctgcgttaggacattctgtgtaacggg
caagatattttgaacatgtttgagttttaaagggcaggattgtaatttac
aattacagattttataaagcaaactgtctaagaaaaaggaggtcaggaga
ctagagtcaggtaaaaaactgagtgactttactcaaattgagaggaaatt
cctgatcaaaactcatattcgtgaatcaggtagaagaatcttcaactgtt
ttcacttattgaaaacatttaatatactaacccaactattttcatatatt
ataaccatcaggaatctagaaaacactctcagaatctgtattcatttgaa
aactgcttattagtgaggttgacatttaggtcatattatttttcaaaagt
aaataaaactaaaagaccatgtacatttgaaaccatttcttaaaattctg
agaaacacagtaactctatttttagtctgtttattttttaaaatttaaaa
attcaataaacagtctaggaattaccacaggtatctgtagagtactgtgg
cctcagtagaaagcctcttttgttgatgtttcaaaattcttaaaaatctc
atcaccaaactttggtgatactaagctacaaaggcacaaattctagagaa
agtcctgtatatgtgagtatttgcaatatagcccagctgacactgaaaaa
gacacttggattctgctagcaatctcagtgcttctttttattttattttc
aacatatcaaatagtatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_85654289_85655444
seq2: B6Ng01-068L15.b_47_1187

seq1  GAATTCTTAGAGACTGAGCCACCAACTAAAAGCTTACAAAGACTGGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAGACTGAGCCACCAACTAAAAGCTTACAAAGACTGGACTG  50

seq1  AGGCCCCAGGGCACATATGTAGAAGACCTGCAGGTCAGTCTCCAACTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCAGGGCACATATGTAGAAGACCTGCAGGTCAGTCTCCAACTGGA  100

seq1  ACAAGGGCTGTCCCTAAAACTGTAACCTGATTGTGGAATCCTTCAGCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGCTGTCCCTAAAACTGTAACCTGATTGTGGAATCCTTCAGCAAC  150

seq1  AAGGTTGCCTTGTCTGGCCTCAGTGGGAGATAAGACACACCTAATTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGCCTTGTCTGGCCTCAGTGGGAGATAAGACACACCTAATTCTCC  200

seq1  CTACAGAGAGTTGATGTAAGATGATCCCTGTCTGAGGAACCCTCTCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGAGTTGATGTAAGATGATCCCTGTCTGAGGAACCCTCTCAGAG  250

seq1  CAGGGCAGATGGGGCAAGTACTCTGTAAGGAGACAACAGGGAGGGGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAGATGGGGCAAGTACTCTGTAAGGAGACAACAGGGAGGGGGCAG  300

seq1  AGTTTGGGATATAAACAAACAAACAAACAAACAAACAAACCTCTTACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGGATATAAACAAACAAACAAACAAACAAACAAACCTCTTACCTG  350

seq1  AGTATGCTTTCCAGCAGTTCTGAAACATAAGGTGCATTCTAATTATTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGCTTTCCAGCAGTTCTGAAACATAAGGTGCATTCTAATTATTATA  400

seq1  ACTGTAATTTCTCTCCAAATCTTTCTAACCATACTTTTCCTTCTTCCCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAATTTCTCTCCAAATCTTTCTAACCATACTTTTCCTTCTTCCCGA  450

seq1  ATCTCCTTCAGACATCATGATGGCCTTTGCAACTGTTTCATTTTCTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTTCAGACATCATGATGGCCTTTGCAACTGTTTCATTTTCTTGTT  500

seq1  TCCTTGCTTGGTTTTATGAAATCCACTGAGTTTAACCTGTATTACCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCTTGGTTTTATGAAATCCACTGAGTTTAACCTGTATTACCTGTT  550

seq1  TTGCCCATGGCCTTGGAACTGTCCAGATAGGCTCCTCAGTGGATGCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCATGGCCTTGGAACTGTCCAGATAGGCTCCTCAGTGGATGCTTTA  600

seq1  CAATAAATAATGGGGAAAGCAGAGATTTCTTGGCTGATCACAGTGTTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAATAATGGGGAAAGCAGAGATTTCTTGGCTGATCACAGTGTTGAG  650

seq1  AAAAAGTGCTGGTTTGAGTATTGTCCCGCTTCCTTCATGAGGACATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGCTGGTTTGAGTATTGTCCCGCTTCCTTCATGAGGACATTTAT  700

seq1  ATCATGCACTCTCTAAAGCTTAGGGAATGTTATGAAGAAAAGGGTGTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCACTCTCTAAAGCTTAGGGAATGTTATGAAGAAAAGGGTGTGGA  750

seq1  AGGAAAGTCCTGGAACAGGAAAGAGGGAGAGAGACTATGAAATATAAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGTCCTGGAACAGGAAAGAGGGAGAGAGACTATGAAATATAAGCC  800

seq1  ATTGTCTACCCTCAGCTGATTTAGTTCCTCCACCAAGAAAGGGCAAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTACCCTCAGCTGATTTAGTTCCTCCACCAAGAAAGGGCAAGTGT  850

seq1  ATATAGTGGTAGTATTGCTTGAAATACAAAGAAGACAATGCACCAAGGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTGGTAGTATTGCTTGAAATACAAAGAAGACAATGCACCAAGGGC  900

seq1  AAGGGATTCACAAGAAGCTAACATACTCATTGGTAGTGCAAAATTATGCA  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGGGATTCACAAGAAGCTAACATACTCATTGGTAGTGC-AAATTATGCA  949

seq1  GAAGTCA-GAGTTGGTAAAGTAATTGAGTTTTAAAACATGCTTAGTTTTA  999
      ||||||| ||||||||||||||||||||||||||||||||| ||| ||||
seq2  GAAGTCAGGAGTTGGTAAAGTAATTGAGTTTTAAAACATGC-TAG-TTTA  997

seq1  CATGGGAGAAGAACCCAAGGGATAAAACAGATGAATTTTATACAGAATTA  1049
      |||||||||||||||||  |||||||||||||||| |||||| |||| ||
seq2  CATGGGAGAAGAACCCA--GGATAAAACAGATGAA-TTTATA-AGAA-TA  1042

seq1  TCCGGACAACGCTTTACTTCTATGTGT-GAATAGTAGACATTACATAAAA  1098
      ||||||| |||| ||||||||||| || ||| |||||||| |||||||||
seq2  TCCGGAC-ACGC-TTACTTCTATGGGTGGAAAAGTAGACA-TACATAAAA  1089

seq1  TCCAACTAAAATAATACAGCCAAACTTCACTTTACTTGCAATTGCTTTTA  1148
      | | ||| ||||||||||||  |||||||| |||||||| |||||||  |
seq2  TTC-ACT-AAATAATACAGC--AACTTCAC-TTACTTGCCATTGCTTAGA  1134

seq1  GATCAAAA  1156
       |||||||
seq2  -ATCAAAA  1141

seq1: chr14_85792519_85793539
seq2: B6Ng01-068L15.g_70_1084 (reverse)

seq1  ACTATTTTAATATTGTTGAAAATTAAAATAAAAAG-AGCACTGAGATTGC  49
      |||| ||| ||| ||||||||| |||||||||||| ||||||||||||||
seq2  ACTA-TTTGATA-TGTTGAAAA-TAAAATAAAAAGAAGCACTGAGATTGC  47

seq1  TAGCAGAATCCAAGTGTCTTTCTCAGTGTCAGCCTGGGCTATTATTGCAA  99
      ||||||||||||||||||||| |||||||||| |||||||| ||||||||
seq2  TAGCAGAATCCAAGTGTCTTTTTCAGTGTCAG-CTGGGCTA-TATTGCAA  95

seq1  ATACTTCACAATATACAGGACTTTCTCTAGAATTTGTGCCTTTGTAGCTT  149
      |||| |||| |||||||||||||||||||||||||||||||||||||| |
seq2  ATAC-TCAC-ATATACAGGACTTTCTCTAGAATTTGTGCCTTTGTAGC-T  142

seq1  TAGTATCACAAAAGTTTGGTGATGAGATTTTTAAAGAATTTTGAAACATC  199
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  TAGTATCACCAAAGTTTGGTGATGAGATTTTT-AAGAATTTTGAAACATC  191

seq1  AACAAAAGAGGCTTTCTACTGAGGCCACAGTACTCTACAGATACCTGTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGAGGCTTTCTACTGAGGCCACAGTACTCTACAGATACCTGTGG  241

seq1  TAATTCCTAGACTGTTTATTGAATTTTTAAATTTT-AAAAATAAACAGAC  298
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAATTCCTAGACTGTTTATTGAATTTTTAAATTTTAAAAAATAAACAGAC  291

seq1  TAAAAATAGAGTTACTGTGTTTCTCAGAA-TTTAAGAAATGGTTTCAAAT  347
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAAAAATAGAGTTACTGTGTTTCTCAGAATTTTAAGAAATGGTTTCAAAT  341

seq1  GTACATGGTCTTTTAGTTTTATTTACTTTTGAAAAATAATATGACCTAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGGTCTTTTAGTTTTATTTACTTTTGAAAAATAATATGACCTAAA  391

seq1  TGTCAACCTCACTAATAAGCAGTTTTCAAATGAATACAGATTCTGAGAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACCTCACTAATAAGCAGTTTTCAAATGAATACAGATTCTGAGAGT  441

seq1  GTTTTCTAGATTCCTGATGGTTATAATATATGAAAATAGTTGGGTTAGTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTAGATTCCTGATGGTTATAATATATGAAAATAGTTGGGTTAGTA  491

seq1  TATTAAATGTTTTCAATAAGTGAAAACAGTTGAAGATTCTTCTACCTGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATGTTTTCAATAAGTGAAAACAGTTGAAGATTCTTCTACCTGAT  541

seq1  TCACGAATATGAGTTTTGATCAGGAATTTCCTCTCAATTTGAGTAAAGTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGAATATGAGTTTTGATCAGGAATTTCCTCTCAATTTGAGTAAAGTC  591

seq1  ACTCAGTTTTTTACCTGACTCTAGTCTCCTGACCTCCTTTTTCTTAGACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTTTTTTACCTGACTCTAGTCTCCTGACCTCCTTTTTCTTAGACA  641

seq1  GTTTGCTTTATAAAATCTGTAATTGTAAATTACAATCCTGCCCTTTAAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTTATAAAATCTGTAATTGTAAATTACAATCCTGCCCTTTAAAA  691

seq1  CTCAAACATGTTCAAAATATCTTGCCCGTTACACAGAATGTCCTAACGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACATGTTCAAAATATCTTGCCCGTTACACAGAATGTCCTAACGCA  741

seq1  GAAATGTCCTTTTCCAGGAACTTAGAGGAATATATAAAATCTGCACACCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTCCTTTTCCAGGAACTTAGAGGAATATATAAAATCTGCACACCA  791

seq1  ATGTGAGAGCAAACAGACCTTCCAGCTTATCCTTAAGGGATAGGATACTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGAGCAAACAGACCTTCCAGCTTATCCTTAAGGGATAGGATACTA  841

seq1  AATTTGCAGCTTCCAAGTCCTTCAGCGTGTATCTTGCTCAGAAATGGAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCAGCTTCCAAGTCCTTCAGCGTGTATCTTGCTCAGAAATGGAAA  891

seq1  GCTTATCACTTCTCATGAAAAGATTAAAAATTATTTTGAGTAAAATCAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCACTTCTCATGAAAAGATTAAAAATTATTTTGAGTAAAATCAAT  941

seq1  TAATAATGACGGGAGGTCAAGCCCCCCTTTCCCTGTGATAACTCCTGCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATGACGGGAGGTCAAGCCCCCCTTTCCCTGTGATAACTCCTGCTT  991

seq1  CTTGTTTCTATTTCAGCTGAATTC  1021
      ||||||||||||||||||||||||
seq2  CTTGTTTCTATTTCAGCTGAATTC  1015