BAC Information

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BAC

Clone NameB6Ng01-068O11
Chromosome14 (Build37)
Map Location 43,170,181 - 43,235,880
singlet/doubletdoublet
Overlap geneLOC100042031
Upstream geneLOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298
Downstream geneEG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068O11.bB6Ng01-068O11.g
ACCDH887361DH887362
length9761,103
definitionDH887361|Mus musculus domesticus DNA, BAC clone: B6Ng01-068O11, 5' end.DH887362|Mus musculus domesticus DNA, BAC clone: B6Ng01-068O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,234,907 - 43,235,880)(43,170,181 - 43,171,290)
sequence
gaattcagtgttcatcctgtggtagagcatggctcaaagagcaaatatcc
tctgaacaaagcaatcaagtatcatgtgcaaaaaggctgtatctggaatt
cccaagaaaattgtatgccacatccttgctccttccaactgggtcctttt
ggtactgattaaacttattatcttgggcagaggacagagagccaggggac
aaaatggagatagctgaccctcaagaactctgaaggtgagcctgaaggaa
tacactagttatgtgaaatgtttctactagactgtcccacaggctttggt
ccttagttttaaggctttttttcccctcttagttttaaggcaggaacaat
cctttgttcttattgctacatgaattctcagagggcataactagtatata
acggaaaaggctttataacacttcctactccaggagaatcctatgtgaca
tcaaggaaaacacagggaataaagaaccctgatgatcaatttgggcctct
aagggctcaacactatcatgccctacaaagtgtccatcacacaaatcctc
agaccccatcgaaggacccacaaccccagatcctgaacaatacacactca
actaacttcacacacagaaaaaaattaaaatgccaaataaatccaggtag
gttccatagtctcagagtacaatgaataaaacaagagtaaagcagtaatg
gcctgcagacattgcattcttacacagtaaggcagctattgtgaccaggt
ccttccagctgttgacagaaccaatcagactccaagcacctcaaggccaa
gtacaaaggaggattaccatagaacacacagcacttatctcatccaacaa
ttaaacaactgtcaagacttcttataatgattgtgagagattgacacact
ccattcatgggagaaatgttgggtcaacagagagggcacattacagtcaa
caggatacagggcattaattttacct
gaattccacgggcctatgtttaggagtctggggacagggacccacaaaat
cctggacatccagacagtgctgggttgcagagagttcacagcaggtttga
ccctgctggcctgcaaggataactgggcaaggggttctcagaatcttgga
catgcaggcactgctagaagtctcagaggagctgagcatggaggaggcca
gcaggctaagaactagccctgaaatcagggaatggggaattctggattag
ctcagaggtgactagcccaggagtattgaggggccttctgttggagactt
agatggcaagactctgtaggcaaaggctttttctccatgtaacccacagt
tggtttgatgagagagacagtccttggttgtaaactgtttattgattgtt
tttcatggaaatgaaagcataacatgtcttaaggttagactagaagttaa
gtaacttctgaggaaggaatgtccaggaagggaagcttattgactgaacc
ctaccatcttctattacctcattagcagggagaaccctattctcttctaa
ataaccacaggccatgttcctatatacagattttggtccaattaaagagg
cctggtaggaagcaggtaacacttttgccatctactgtgggtctgggact
tccaacccactcaactttaccaaattctggacatggtagtctactgtccc
aggtgttagtctgagttttattgatgtgaggagacaccaggacatatgtt
tagtatgtgggtctcaatgcctaccctccacactgacacactatttctaa
caggccacaactcctaaaagtaccactcccatattcaagccaccacactt
cctctgcaatctctcaagacatttacctcactctgtcctactgttttcct
ttttctccttcacaaattatgtgttctattattttcttgaatatcttcta
taacccaacactagtgcattacctttctagggatactgcagttaaatgca
catctctagatattcaattttaccatccacatagacacatgatgggtatt
tggtctttttgggtctgggttaatcactcaaaaattattcatgtaccatc
cat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_43234907_43235880
seq2: B6Ng01-068O11.b_50_1025 (reverse)

seq1  AGGTAAAATT-ATGCCCTGTATCCTGTTGACTGTATTGTGCCCTCTCTGT  49
      |||||||||| |||||||||||||||||||||||| ||||||||||||||
seq2  AGGTAAAATTAATGCCCTGTATCCTGTTGACTGTAATGTGCCCTCTCTGT  50

seq1  TGACCCACATTTTCTCCCATGAATGGAGTGTGTC-ATCTCTCACAATCAT  98
      |||||||   |||||||||||||||||||||||| |||||||||||||||
seq2  TGACCCAACATTTCTCCCATGAATGGAGTGTGTCAATCTCTCACAATCAT  100

seq1  TATAAGAAGTCTTGACAGTTGTTTAATTGTTGGATGAGATAAGTGCTGTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAAGTCTTGACAGTTGTTTAATTGTTGGATGAGATAAGTGCTGTG  150

seq1  TGTTCTATGGTAATCCTCCTTTGTACTTGGCCTTGAGGTGCTTGGAGTCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTATGGTAATCCTCCTTTGTACTTGGCCTTGAGGTGCTTGGAGTCT  200

seq1  GATTGGTTCTGTCAACAGCTGGAAGGACCTGGTCACAATAGCTGCCTTAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTTCTGTCAACAGCTGGAAGGACCTGGTCACAATAGCTGCCTTAC  250

seq1  TGTGTAAGAATGCAATGTCTGCAGGCCATTACTGCTTTACTCTTGTTTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAGAATGCAATGTCTGCAGGCCATTACTGCTTTACTCTTGTTTTA  300

seq1  TTCATTGTACTCTGAGACTATGGAACCTACCTGGATTTATTTGGCATTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGTACTCTGAGACTATGGAACCTACCTGGATTTATTTGGCATTTT  350

seq1  AATTTTTTTCTGTGTGTGAAGTTAGTTGAGTGTGTATTGTTCAGGATCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTCTGTGTGTGAAGTTAGTTGAGTGTGTATTGTTCAGGATCTG  400

seq1  GGGTTGTGGGTCCTTCGATGGGGTCTGAGGATTTGTGTGATGGACACTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTGGGTCCTTCGATGGGGTCTGAGGATTTGTGTGATGGACACTTT  450

seq1  GTAGGGCATGATAGTGTTGAGCCCTTAGAGGCCCAAATTGATCATCAGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGCATGATAGTGTTGAGCCCTTAGAGGCCCAAATTGATCATCAGGG  500

seq1  TTCTTTATTCCCTGTGTTTTCCTTGATGTCACATAGGATTCTCCTGGAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTCCCTGTGTTTTCCTTGATGTCACATAGGATTCTCCTGGAGT  550

seq1  AGGAAGTGTTATAAAGCCTTTTCCGTTATATACTAGTTATGCCCTCTGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTGTTATAAAGCCTTTTCCGTTATATACTAGTTATGCCCTCTGAG  600

seq1  AATTCATGTAGCAATAAGAACAAAGGATTGTTCCTGCCTTAAAACTAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGTAGCAATAAGAACAAAGGATTGTTCCTGCCTTAAAACTAAGA  650

seq1  GGGGAAAAAAAGCCTTAAAACTAAGGACCAAAGCCTGTGGGACAGTCTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAAAAAGCCTTAAAACTAAGGACCAAAGCCTGTGGGACAGTCTAG  700

seq1  TAGAAACATTTCACATAACTAGTGTATTCCTTCAGGCTCACCTTCAGAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACATTTCACATAACTAGTGTATTCCTTCAGGCTCACCTTCAGAGT  750

seq1  TCTTGAGGGTCAGCTATCTCCATTTTGTCCCCTGGCTCTCTGTCCTCTGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGGGTCAGCTATCTCCATTTTGTCCCCTGGCTCTCTGTCCTCTGC  800

seq1  CCAAGATAATAAGTTTAATCAGTACCAAAAGGACCCAGTTGGAAGGAGCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATAATAAGTTTAATCAGTACCAAAAGGACCCAGTTGGAAGGAGCA  850

seq1  AGGATGTGGCATACAATTTTCTTGGGAATTCCAGATACAGCCTTTTTGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTGGCATACAATTTTCTTGGGAATTCCAGATACAGCCTTTTTGCA  900

seq1  CATGATACTTGATTGCTTTGTTCAGAGGATATTTGCTCTTTGAGCCATGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATACTTGATTGCTTTGTTCAGAGGATATTTGCTCTTTGAGCCATGC  950

seq1  TCTACCACAGGATGAACACTGAATTC  974
      ||||||||||||||||||||||||||
seq2  TCTACCACAGGATGAACACTGAATTC  976

seq1: chr14_43170181_43171290
seq2: B6Ng01-068O11.g_71_1173

seq1  GAATTCCACGGGCCTATGTTTAGGAGTCTGGGGACAGGGACCCACAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGGCCTATGTTTAGGAGTCTGGGGACAGGGACCCACAAAAT  50

seq1  CCTGGACATCCAGACAGTGCTGGGTTGCAGAGAGTTCACAGCAGGTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACATCCAGACAGTGCTGGGTTGCAGAGAGTTCACAGCAGGTTTGA  100

seq1  CCCTGCTGGCCTGCAAGGATAACTGGGCAAGGGGTTCTCAGAATCTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGGCCTGCAAGGATAACTGGGCAAGGGGTTCTCAGAATCTTGGA  150

seq1  CATGCAGGCACTGCTAGAAGTCTCAGAGGAGCTGAGCATGGAGGAGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGGCACTGCTAGAAGTCTCAGAGGAGCTGAGCATGGAGGAGGCCA  200

seq1  GCAGGCTAAGAACTAGCCCTGAAATCAGGGAATGGGGAATTCTGGATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTAAGAACTAGCCCTGAAATCAGGGAATGGGGAATTCTGGATTAG  250

seq1  CTCAGAGGTGACTAGCCCAGGAGTATTGAGGGGCCTTCTGTTGGAGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGTGACTAGCCCAGGAGTATTGAGGGGCCTTCTGTTGGAGACTT  300

seq1  AGATGGCAAGGCTCTGTAGGCAAAGGCTTTTTCTCCATGTAACCCACAGT  350
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCAAGACTCTGTAGGCAAAGGCTTTTTCTCCATGTAACCCACAGT  350

seq1  TGGTTTGATGAGAGAGACAGTCCTTGGTTGTAAACTGTTTATTGATTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGATGAGAGAGACAGTCCTTGGTTGTAAACTGTTTATTGATTGTT  400

seq1  TTTCATGGAAATGAAAGCATAACATGTCTTAAGGTTAGACTAGAAGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGAAATGAAAGCATAACATGTCTTAAGGTTAGACTAGAAGTTAA  450

seq1  GTAACTTCTGAGGAAGGAATGTCCAGGAAGGGAAGCTTATTGACTGAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTCTGAGGAAGGAATGTCCAGGAAGGGAAGCTTATTGACTGAACC  500

seq1  CTACCATCTTCTATTACCTCATTAGCAGGGAGAACCCTATTCTCTTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATCTTCTATTACCTCATTAGCAGGGAGAACCCTATTCTCTTCTAA  550

seq1  ATAACCACAGGCCATGTTCCTATATACAGATTTTGGTCCCATGAAAGAGG  600
      ||||||||||||||||||||||||||||||||||||||| || |||||||
seq2  ATAACCACAGGCCATGTTCCTATATACAGATTTTGGTCCAATTAAAGAGG  600

seq1  CCTGGTAGGAAGCAGGTAACACTTTTGCCATCTACTGTGGGTCTGGGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAGGAAGCAGGTAACACTTTTGCCATCTACTGTGGGTCTGGGACT  650

seq1  TCCAACCCACTCAACTTTACCAAATTCTGGACATGGTAGTCTACTGTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCCACTCAACTTTACCAAATTCTGGACATGGTAGTCTACTGTCCC  700

seq1  AGGTGTTAGTCTGAGATTTATTGATGTGAGGAGACACCAGGACATATGTT  750
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGGTGTTAGTCTGAGTTTTATTGATGTGAGGAGACACCAGGACATATGTT  750

seq1  TAGTATGCGGGTCTCAATGCCTACCCTCCACACTGACACACTGTTTCTAA  800
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  TAGTATGTGGGTCTCAATGCCTACCCTCCACACTGACACACTATTTCTAA  800

seq1  CAAGGCCACAACTCCTAAAAGTACCACTCCCATATTCAAGCCACCACAC-  849
      | ||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  C-AGGCCACAACTCCTAAAAGTACCACTCCCATATTCAAGCCACCACACT  849

seq1  TCCTCTGCAATCTCTCAAGACATTTACCTCACTCTGTCCTACTGTTTTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCAATCTCTCAAGACATTTACCTCACTCTGTCCTACTGTTTTCC  899

seq1  TTTTTCTCCTTCACAAATTATGTGTTCTATTATTTTCTTGAAATATCCTC  949
      |||||||||||||||||||||||||||||||||||||||| ||||| || 
seq2  TTTTTCTCCTTCACAAATTATGTGTTCTATTATTTTCTTG-AATAT-CTT  947

seq1  CTATAACCCAACACTAGTGCATTACC-TTCTATGGATACTGCAGTTTAAA  998
      |||||||||||||||||||||||||| ||||| ||||||||||| |||||
seq2  CTATAACCCAACACTAGTGCATTACCTTTCTAGGGATACTGCAG-TTAAA  996

seq1  TGCACATCTCTAGACATTCAATTTTACCATCCACATAAGACACATGATGT  1048
      |||||||||||||| ||||||||||||||||||||| |||||||||||| 
seq2  TGCACATCTCTAGATATTCAATTTTACCATCCACAT-AGACACATGATG-  1044

seq1  GGTATTT-GTCTTTTTGGGTCTGGGTTATATCACTCAAAAATATTATTCA  1097
      ||||||| |||||||||||||||||||| |||||||||||  ||||||||
seq2  GGTATTTGGTCTTTTTGGGTCTGGGTTA-ATCACTCAAAA--ATTATTCA  1091

seq1  TGTGTCCATCCAT  1110
      |||  ||||||||
seq2  TGT-ACCATCCAT  1103