BAC Information

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BAC

Clone NameB6Ng01-069B01
Chromosome14 (Build37)
Map Location 78,042,359 - 78,193,710
singlet/doubletdoublet
Overlap geneD230005D02Rik
Upstream geneLOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, LOC100043755, LOC676171, EG629678
Downstream geneGm1587, Dnajc15, Epsti1, AU021034, Tnfsf11, LOC219180, Akap11, Dgkh, LOC673649
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069B01.bB6Ng01-069B01.g
ACCDH887478DH887479
length1,0671,109
definitionDH887478|Mus musculus domesticus DNA, BAC clone: B6Ng01-069B01, 5' end.DH887479|Mus musculus domesticus DNA, BAC clone: B6Ng01-069B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,042,359 - 78,043,438)(78,192,577 - 78,193,710)
sequence
gaattcaattgtaaggaaaagctgcagatcgtttctctagccactagctc
acagacgtctaatgttgtttgcactttgggggtaaacatgcacaaatttg
ttatgaatattcatttgcaggccttctgtgtagatgtatctcttcatctg
cacatggagagctgcctatgactgagacgcacagaaagcatccttctgaa
aacacagccactgtgttttccaaaggaccttgagcctgatgaattcctgc
aagactgcaggagtattccacgtgtcccatgtcgtggtctgtcagggaaa
gtcagtttaaccagtcactgttagccactgtcgtaaatggagggtctgtc
tggttacggctcatccatacttaaacttaaatagtacttttattttcatt
cataagcattgcccaaaataccatattcttaaacataatctttaaaaatt
agatgtttatcatttctatttaacaattttgtatgatttgtatcccccaa
agagtttaactgtggcgatctgtctgatcccgagtttagaactaatcaaa
cctggcaggacgaccagtggatatagaactagttcctatgcctcccccta
cgcccagaatctgtccactgccaatcgatcagcataactggtagagcccc
atgcacccccctctccatctataaccaactgctgtgtgggcagactgatg
cgggcacaattgctctgcgctcgtgattgcaaggcctctgtcaagcttgg
gacacggaattacacagccctcttccctgccttctgatgcctgtattatt
tttctgttacttcttctgcagtgttccctgagttctaatgggggttctct
aaatgtcttacgtatatctgagccctcagctgtcctttagtctcagcatc
tgtgtaaccacgagtctatattaaccagtttgttatatggtgaaacttct
ctgactgtagctctgtctgtggatataatatatgagagttgttttgatgc
tgagtcaattcagctaccagagttaagttcacttctaggagctagactct
gtgacaatctagactgg
gaattcttgtcttgaaagctttttgaacagtaactgaacaacaaaaacaa
aaaactccaaaaattaaaaaaatcggatttatatctcgtttatgttttga
gttttggagaatgttccatcaccttctttccaaagtctcgtttcacattt
taaaccaggtacagtctacaaaggataatctctggaaatgctgaagagac
ttctcgttaggatttccaactttcatggtaaattgaggtaaaagcactgt
agcacacacctttagtcccagcacttgggaggcagaggcaggcagatctc
tgtgagttcgaggccagcctggtctccggaaatgacaccttgtcgctgtg
attttcagcttctagtgctttcgggccacctgcttcacacaagggcctgt
gcctgggaggacactgaccctgtggcgtcagagtgccttgctggagagca
gctttcaaaagccagccgagatcatacgggttctctctgccagggactcg
atctgtttcagccatatgctctactgaaaacagatgagagaggatgaacg
cagaaccttttagaaactaatttttaaaattatgtctaactcatcagata
aattttaaagaaaataccatccgaagaattaaccaaaaaggttaggaact
atttttgaatcgcgaggctcacaaacagcagatgggttgtaggaaggggt
gtctagccctgtgcttctctgctaatgtcaatgacatcagcatacgaatg
tcaaccagatgcctgtacctttctgctttctactgaaagagaagatcgct
tcagatgttaatgagcacatgtctcccagtaagagaaacagtttattaaa
actgggtgcttcagctcagtgggtgtaggtagggctaaagctccttctct
tggccccaggtggtattgagagcttcctctctccattctagagaaaaaag
aaataccagcctcatttttctgtgtagcaggttgatccctccatagcact
tgctaagcctggctattcaagcttacaccaaaaatgaacttctgtgcaaa
cttccaacagagacaaaccattgatgaaaataagctggttactaaggatt
tgctgcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_78042359_78043438
seq2: B6Ng01-069B01.b_48_1114

seq1  GAATTCAATTGTAAGGAAAAGCTGCAGATCGTTTCTCTAGCCACTAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGTAAGGAAAAGCTGCAGATCGTTTCTCTAGCCACTAGCTC  50

seq1  ACAGACGTCTAATGTTGTTTGCACTTTGGGGGTAAACATGCACAAATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACGTCTAATGTTGTTTGCACTTTGGGGGTAAACATGCACAAATTTG  100

seq1  TTATGAATATTCATTTGCAGGCCTTCTGTGTAGATGTATCTCTTCATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAATATTCATTTGCAGGCCTTCTGTGTAGATGTATCTCTTCATCTG  150

seq1  CACATGGAGAGCTGCCTATGACTGAGACGCACAGAAAGCATCCTTCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGAGAGCTGCCTATGACTGAGACGCACAGAAAGCATCCTTCTGAA  200

seq1  AACACAGCCACTGTGTTTTCCAAAGGACCTTGAGCCTGATGAATTCCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGCCACTGTGTTTTCCAAAGGACCTTGAGCCTGATGAATTCCTGC  250

seq1  AAGACTGCAGGAGTATTCCACGTGTCCCATGTCGTGGTCTGTCAGGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGCAGGAGTATTCCACGTGTCCCATGTCGTGGTCTGTCAGGGAAA  300

seq1  GTCAGTTTAACCAGTCACTGTTAGCCACTGTCGTAAATGGAGGGTCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTTAACCAGTCACTGTTAGCCACTGTCGTAAATGGAGGGTCTGTC  350

seq1  TGGTTACGGCTCATCCATACTTAAACTTAAATAGTACTTTTATTTTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACGGCTCATCCATACTTAAACTTAAATAGTACTTTTATTTTCATT  400

seq1  CATAAGCATTGCCCAAAATACCATATTCTTAAACATAATCTTTAAAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCATTGCCCAAAATACCATATTCTTAAACATAATCTTTAAAAATT  450

seq1  AGATGTTTATCATTTCTATTTAACAATTTTGTATGATTTGTATCCCCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTATCATTTCTATTTAACAATTTTGTATGATTTGTATCCCCCAA  500

seq1  AGAGTTTAACTGTGGCGATCTGTCTGATCCCGAGTTTAGAACTAATCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTAACTGTGGCGATCTGTCTGATCCCGAGTTTAGAACTAATCAAA  550

seq1  CCTGGCAGGACGACCAGTGGATATAGAACTAGTTCCTATGCCTCCCCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAGGACGACCAGTGGATATAGAACTAGTTCCTATGCCTCCCCCTA  600

seq1  CGCCCAGAATCTGTCCACTGCCAATCGATCAGCATAACTGGTAGAGCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCAGAATCTGTCCACTGCCAATCGATCAGCATAACTGGTAGAGCCCC  650

seq1  ATGCACCCCCCTCTCCATCTATAACCAACTGCTGTGTGGGCAGACTGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCCCCCTCTCCATCTATAACCAACTGCTGTGTGGGCAGACTGATG  700

seq1  CGGGCACAATTGCTCTGCGCTCGTGATTGCAAGGCCTCTGTCAAGCTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCACAATTGCTCTGCGCTCGTGATTGCAAGGCCTCTGTCAAGCTTGG  750

seq1  GACACGGAATTACACAGCCCTCTTCCCTGCCTTCTGATGCCTGTATTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGGAATTACACAGCCCTCTTCCCTGCCTTCTGATGCCTGTATTATT  800

seq1  TTTCTGTTACTTCTTCTGCAGTGTTCCCTGAGTTCTAATGGGGGTTCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTACTTCTTCTGCAGTGTTCCCTGAGTTCTAATGGGGGTTCTCT  850

seq1  AAATGTCTTACGTATATCTGAGCCCTCAGCTGTCCTTTAGTCTCAGCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTTACGTATATCTGAGCCCTCAGCTGTCCTTTAGTCTCAGCATC  900

seq1  TGTGTAACCACGAGTCTATATTAACCAGTTTGTTATATGGTGAAACTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAACCACGAGTCTATATTAACCAGTTTGTTATATGGTGAAACTTCT  950

seq1  CTGACTGTAGCCTCTGTCTGTGGATATAAATATATTGAGAAGGTGTTTTG  1000
      |||||||||| |||||||||||||||| |||||| |||| || |||||||
seq2  CTGACTGTAG-CTCTGTCTGTGGATAT-AATATA-TGAG-AGTTGTTTTG  996

seq1  ATGCTGAGTCAATTCAGCTAACCAGAAGTTTTAGGTTCACTCCTAGGAGC  1050
      ||||||||||||||||||| ||||||    ||| ||||||| ||||||||
seq2  ATGCTGAGTCAATTCAGCT-ACCAGA---GTTAAGTTCACTTCTAGGAGC  1042

seq1  TAAGACCTCTTGTGACAAATTCTAGACTGG  1080
      | ||| ||| ||||||||  ||||||||||
seq2  T-AGA-CTC-TGTGACAA--TCTAGACTGG  1067

seq1: chr14_78192577_78193710
seq2: B6Ng01-069B01.g_68_1176 (reverse)

seq1  CTTGCAGCAAACTCCTCTAGGTGACCCAGCCTCTATTCTCCTGCAATTGT  50
      ||||||||||| |||| |||   | |||||   |||| || | |||| ||
seq2  CTTGCAGCAAA-TCCT-TAG--TAACCAGC--TTATTTTCAT-CAATGGT  43

seq1  TTGTTCCTCCCTGTAGGAGTTTCTGCACAGAAGTTCCTTTTTCTGGTTGT  100
      |||    || |||| |||  || ||||||||||||| |||||   | |||
seq2  TTG----TCTCTGTTGGAAGTT-TGCACAGAAGTTCATTTTT---GGTGT  85

seq1  AAGCTTGAATAGCCAGGCCTTAGCCAGGTGCTATGGAGGGATTCAACCCT  150
      ||||||||||||||||| ||||| || |||||||||||||| |||| |||
seq2  AAGCTTGAATAGCCAGG-CTTAG-CAAGTGCTATGGAGGGA-TCAA-CCT  131

seq1  GCTGACACCAGAAAAATGAGGCCTGGTATTTTCTTTTTTCTCTAGAATGG  200
      ||| ||| ||||||||||||| |||||| ||||||||||||||||||| |
seq2  GCT-ACA-CAGAAAAATGAGG-CTGGTA-TTTCTTTTTTCTCTAGAAT-G  176

seq1  GAGAGAGGAAGCTCTCAATACCACCTGGGGGCCAAGAGAAGGAGCCTTAG  250
      |||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  GAGAGAGGAAGCTCTCAATACCACCT-GGGGCCAAGAGAAGGAGCTTTAG  225

seq1  CCCTACCTACACCCACTGAGCTGAAGCACCCAGTTTTAATAAACTGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACCTACACCCACTGAGCTGAAGCACCCAGTTTTAATAAACTGTTTC  275

seq1  TCCTACTGGGAGACATGTGCTCATTAACATCTGAAGCGATCTTCTCTTTC  350
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTGGGAGACATGTGCTCATTAACATCTGAAGCGATCTTCTCTTTC  325

seq1  AGTAGAAAGCAGAAAGGTACAGGCATCTGGTTGACATTCGTATGCTGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAAGCAGAAAGGTACAGGCATCTGGTTGACATTCGTATGCTGATG  375

seq1  TCATTGACATTAGCAGAGAAGCACAGGGCTAGACACCCCTTCCTACAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGACATTAGCAGAGAAGCACAGGGCTAGACACCCCTTCCTACAACC  425

seq1  CATCTGCTGTTTGTGAGCCTCGCGATTCAAAAATAGTTCCTAACCTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTGTTTGTGAGCCTCGCGATTCAAAAATAGTTCCTAACCTTTTT  475

seq1  GGTTAATTCTTCGGATGGTATTTTCTTTAAAATTTATCTGATGAGTTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATTCTTCGGATGGTATTTTCTTTAAAATTTATCTGATGAGTTAGA  525

seq1  CATAATTTTAAAAATTAGTTTCTAAAAGGTTCTGCGTTCATCCTCTCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTTAAAAATTAGTTTCTAAAAGGTTCTGCGTTCATCCTCTCTCA  575

seq1  TCTGTTTTCAGTAGAGCATATGGCTGAAACAGATCGAGTCCCTGGCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCAGTAGAGCATATGGCTGAAACAGATCGAGTCCCTGGCAGAG  625

seq1  AGAACCCGTATGATCTCGGCTGGCTTTTGAAAGCTGCTCTCCAGCAAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCGTATGATCTCGGCTGGCTTTTGAAAGCTGCTCTCCAGCAAGGC  675

seq1  ACTCTGACGCCACAGGGTCAGTGTCCTCCCAGGCACAGGCCCTTGTGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGACGCCACAGGGTCAGTGTCCTCCCAGGCACAGGCCCTTGTGTGA  725

seq1  AGCAGGTGGCCCGAAAGCACTAGAAGCTGAAAATCACAGCGACAAGGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTGGCCCGAAAGCACTAGAAGCTGAAAATCACAGCGACAAGGTGT  775

seq1  CATTTCCGGAGACCAGGCTGGCCTCGAACTCACAGAGATCTGCCTGCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCGGAGACCAGGCTGGCCTCGAACTCACAGAGATCTGCCTGCCTC  825

seq1  TGCCTCCCAAGTGCTGGGACTAAAGGTGTGTGCTACAGTGCTTTTACCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCAAGTGCTGGGACTAAAGGTGTGTGCTACAGTGCTTTTACCTC  875

seq1  AATTTACCATGAAAGTTGGAAATCCTAACGAGAAGTCTCTTCAGCATTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACCATGAAAGTTGGAAATCCTAACGAGAAGTCTCTTCAGCATTTC  925

seq1  CAGAGATTATCCTTTGTAGACTGTACCTGGTTTAAAATGTGAAACGAGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTATCCTTTGTAGACTGTACCTGGTTTAAAATGTGAAACGAGAC  975

seq1  TTTGGAAAGAAGGTGATGGAACATTCTCCAAAACTCAAAACATAAACGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAAGAAGGTGATGGAACATTCTCCAAAACTCAAAACATAAACGAG  1025

seq1  ATATAAATCCGATTTTTTTAATTTTTGGAGTTTTTTGTTTTTGTTGTTCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATCCGATTTTTTTAATTTTTGGAGTTTTTTGTTTTTGTTGTTCA  1075

seq1  GTTACTGTTCAAAAAGCTTTCAAGACAAGAATTC  1134
      ||||||||||||||||||||||||||||||||||
seq2  GTTACTGTTCAAAAAGCTTTCAAGACAAGAATTC  1109