BAC Information

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BAC

Clone NameB6Ng01-069I07
Chromosome14 (Build37)
Map Location 70,120,311 - 70,262,022
singlet/doubletdoublet
Overlap geneChmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik
Upstream geneAdam7, Adamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1
Downstream geneLOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069I07.bB6Ng01-069I07.g
ACCDH887800DH887801
length1,0371,125
definitionDH887800|Mus musculus domesticus DNA, BAC clone: B6Ng01-069I07, 5' end.DH887801|Mus musculus domesticus DNA, BAC clone: B6Ng01-069I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,120,311 - 70,121,351)(70,260,887 - 70,262,022)
sequence
gaattctacttccgtatgcttgtctaccacacagggaagcgtctgtggct
cctaccaaggatccctgtagaagaacccataggaaaatgcaagagatcct
taaacaggccctctgatggcacagaccacctcactatctcctcaccagca
ggacaccaggctccagaagaacattcataatatgttagcagctgtaatca
ccagtcaattgtctcctttactctctgctttctgagttttctgtatggac
tacctagtaactgtataactaataagtaactttgtttttgcaatgccaca
ggcaaatccatggcttcaggcatcctagataagcactctgcaaatgggga
tttactcctagtggggtttgcgtgttgtttttgttctggggctccagagt
cagccgcatagggaaggaggttacctctcagactcttgggataaagactc
gaccttccgagagaggagctgctcactctgcatcagctggtagaccccaa
catccacgtcgttcacaggagataccttggcatgtggtcccctggcaaac
ttcacaatctgggggacagggacaaattactgctgtccctaccacacaag
ctgagaaatccacaaccaggcctgggcatatgagtgcagaccaagtcact
gtgcatccatgagaaacacacacaagcacacatggacaggcatgcttgca
aaccttctctccattctgctccaagacagtgactctcttctccttctgca
gctgcagcagcacgaggtagaaggtcctctcatccgggcaggagttggcg
cacagagcactcagctctgacagggccaccacagggtgggaggagagggg
cgagttctggtataggcgatacacctcctcggccttttcctgcagggaaa
gcagagattcaggccctggttaccacgacagatgcataaattttgacctt
gagcttcagagtcaggactcacaacgttaagacctgccaatactgaccca
tccaaagtggcagcttataagtagcggaaagaagatg
gaattccacagaggactgccctctgggtcctagccttgaaagggggtact
cttgggactctaagggagaacagggaatcttagagggccagggagtttgc
acaaggtggcagagctccaagcaatgacaccaaggtttacatcttccgag
agtccctggtttcttattctctaggctcagattctaactaaacctcggta
aactgaggcaggcagctttcacagctcccagtttgcacttaggaaaccgc
gagcactgtttcaaaatctttgtgatctggggtcggcagtgggaggtacc
ctcgatgttcttcccatcagcagtttcccccgggctaatcatgagtgagg
ggcgaactggggacattgaaaatggaaagcattcggcggctagctctttg
cactgtcgtaacagaggtgcagtttcactctggactggtgaaaagataga
cgcagcggggcttgggacctcaagcgtcacaccagagccacacgttggat
tctctgtgccttcttcattcatggatcccgctccaccaactaggagaagc
ctgtgtgttcctgccctggtggccccagccaagcttccgggctttgcgtt
gtttcgggcacgatgacggtcacctcgcgccccctggtggtaactctttc
agttacagcctcggagcgaacagaaggcctctgtttacacaagcaggcta
gggaactggaaccccgaagcacctttagcaccttctcctcctttgccaca
tcccacccacaccgtccttttggggagtctgggggccttcattcccctga
gcacgcatggcccagtccctctacattcccatagcggtagaaagaacaca
gccttagatacccaaatgtcactctgcccctgcagacccaaaaaagcagc
aaagaatgcagggttcctccacctgtacgtattgcagccacccgcacaca
ctggctgctcacgccaccttgttcccttgggtaagacccgtgaacttctg
gaatcgtcctagcccgtacgcaaagggagtgattgtttcctggttctggc
ttcttcctgacatggggaggcatttattgggcatcaggctggtatctttt
cattacattggaaggaactggccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_70120311_70121351
seq2: B6Ng01-069I07.b_46_1082

seq1  GAATTCTACTTCCGTATGCTTGTCTACCACACAGGGAAGCGTCTGTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTTCCGTATGCTTGTCTACCACACAGGGAAGCGTCTGTGGCT  50

seq1  CCTACCAAGGATCCCTGTAGAAGAACCCATAGGAAAATGCAAGAGATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCAAGGATCCCTGTAGAAGAACCCATAGGAAAATGCAAGAGATCCT  100

seq1  TAAACAGGCCCTCTGATGGCACAGACCACCTCACTATCTCCTCACCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGGCCCTCTGATGGCACAGACCACCTCACTATCTCCTCACCAGCA  150

seq1  GGACACCAGGCTCCAGAAGAACATTCATAATATGTTAGCAGCTGTAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCAGGCTCCAGAAGAACATTCATAATATGTTAGCAGCTGTAATCA  200

seq1  CCAGTCAATTGTCTCCTTTACTCTCTGCTTTCTGAGTTTTCTGTATGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCAATTGTCTCCTTTACTCTCTGCTTTCTGAGTTTTCTGTATGGAC  250

seq1  TACCTAGTAACTGTATAACTAATAAGTAACTTTGTTTTTGCAATGCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAGTAACTGTATAACTAATAAGTAACTTTGTTTTTGCAATGCCACA  300

seq1  GGCAAATCCATGGCTTCAGGCATCCTAGATAAGCACTCTGCAAATGGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATCCATGGCTTCAGGCATCCTAGATAAGCACTCTGCAAATGGGGA  350

seq1  TTTACTCCTAGTGGGGTTTGCGTGTTGTTTTTGTTCTGGGGCTCCAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCCTAGTGGGGTTTGCGTGTTGTTTTTGTTCTGGGGCTCCAGAGT  400

seq1  CAGCCGCATAGGGAAGGAGGTTACCTCTCAGACTCTTGGGATAAAGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGCATAGGGAAGGAGGTTACCTCTCAGACTCTTGGGATAAAGACTC  450

seq1  GACCTTCCGAGAGAGGAGCTGCTCACTCTGCATCAGCTGGTAGACCCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCCGAGAGAGGAGCTGCTCACTCTGCATCAGCTGGTAGACCCCAA  500

seq1  CATCCACGTCGTTCACAGGAGATACCTTGGCATGTGGTCCCCTGGCAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACGTCGTTCACAGGAGATACCTTGGCATGTGGTCCCCTGGCAAAC  550

seq1  TTCACAATCTGGGGGACAGGGACAAATTACTGCTGTCCCTACCACACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAATCTGGGGGACAGGGACAAATTACTGCTGTCCCTACCACACAAG  600

seq1  CTGAGAAATCCACAACCAGGCCTGGGCATATGAGTGCAGACCAAGTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAATCCACAACCAGGCCTGGGCATATGAGTGCAGACCAAGTCACT  650

seq1  GTGCATCCATGAGAAACACACACAAGCACACATGGACAGGCATGCTTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATCCATGAGAAACACACACAAGCACACATGGACAGGCATGCTTGCA  700

seq1  AACCTTCTCTCCATTCTGCTCCAAGACAGTGACTCTCTTCTCCTTCTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCTCTCCATTCTGCTCCAAGACAGTGACTCTCTTCTCCTTCTGCA  750

seq1  GCTGCAGCAGCACGAGGTAGAAGGTCCTCTCATCCGGGCAGGAGTTGGCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGCAGCACGAGGTAGAAGGTCCTCTCATCCGGGCAGGAGTTGGCG  800

seq1  CACAGAGCACTCAGCTCTGACAGGGCCACCACAGGGTGGGAGGAGAGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCACTCAGCTCTGACAGGGCCACCACAGGGTGGGAGGAGAGGGG  850

seq1  CGAGTTCTGGTATAGGCGATACACCTCCTCGGCCTTTTCCTGCAGGGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CGAGTTCTGGTATAGGCGATACACCTCCTCGGCCTTTTCCTGCAGGGAAA  900

seq1  GCAGAGATTCAAGGCCCTGGTTACCACGACAGGATGCATAAATTTTGACC  950
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  GCAGAGATTC-AGGCCCTGGTTACCACGACA-GATGCATAAATTTTGACC  948

seq1  CTGAGCTTCAGAGCCAGGAGCTCACAACGTTAAGACCTGCAGAGTACTGA  1000
       |||||||||||| ||||| ||||||||||||||||||||  | ||||||
seq2  TTGAGCTTCAGAGTCAGGA-CTCACAACGTTAAGACCTGC-CAATACTGA  996

seq1  CCCATCCAAAGTGGCAGCTTATAAAGTAGCGGAAAG-AGATG  1041
      |||||||||||||||||||||| ||||||||||||| |||||
seq2  CCCATCCAAAGTGGCAGCTTAT-AAGTAGCGGAAAGAAGATG  1037

seq1: chr14_70260887_70262022
seq2: B6Ng01-069I07.g_70_1194 (reverse)

seq1  ATGGCCCAGTTCCTTCCCATAGTAATGAAAAGAATACAGGCCTAGGTGCC  50
      |||| |||||||||||| || ||||||||||| ||||  |||| | ||||
seq2  ATGG-CCAGTTCCTTCCAAT-GTAATGAAAAG-ATACCAGCCT-GATGCC  46

seq1  CAAATAAATGGCTTCCCATGTTCAGGGAAGAAGCCAGAA-CAGGAAACAA  99
      | |||||||| || |||||| ||| |||||||||||||| ||||||||||
seq2  C-AATAAATGCCTCCCCATG-TCA-GGAAGAAGCCAGAACCAGGAAACAA  93

seq1  TCACTTCCCTTTGCGTACGGGCTAGGACGATTCCAGAAATGTCACGTGTC  149
      |||| ||||||||||||||||||||||||||||||||| | ||||| |||
seq2  TCAC-TCCCTTTGCGTACGGGCTAGGACGATTCCAGAAGT-TCACGGGTC  141

seq1  TTAACCAAGGG-ACAGGTGGGCGTGGAGCAGGCCAGGTGTGGTGCGGGTG  198
      ||| ||||||| ||| |  ||||| ||||| |||| |||| |||||||||
seq2  TTACCCAAGGGAACAAGGTGGCGT-GAGCA-GCCA-GTGT-GTGCGGGTG  187

seq1  GCCTGCAATACGTACAGGTGGA-GAACCCTGCAATTCTTTGCTGCTTTTT  247
      | |||||||||||||||||||| ||||||||| |||||||||||||||||
seq2  G-CTGCAATACGTACAGGTGGAGGAACCCTGC-ATTCTTTGCTGCTTTTT  235

seq1  TGGGTCTGCAGGGGCAGAGTGACATTTGGGTATCTAGGCCTGTGTTCTTT  297
      |||||||||||||||||||||||||||||||||||| | |||||||||||
seq2  TGGGTCTGCAGGGGCAGAGTGACATTTGGGTATCTAAGGCTGTGTTCTTT  285

seq1  CTACCGCTATGGGAATGTAGAGGGACTGGGCCATGCGTGCTCAGGGGAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCGCTATGGGAATGTAGAGGGACTGGGCCATGCGTGCTCAGGGGAAT  335

seq1  GAAGGCCCCCAGACT-CCCAAAAGGACGGTGTGGGTGGGATGTGGCAAAG  396
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAAGGCCCCCAGACTCCCCAAAAGGACGGTGTGGGTGGGATGTGGCAAAG  385

seq1  GAGGAGAAGGTGCTGAAGGTGCTTCGGGGTTCCAGTTCCCTAGCCTGCTT  446
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAGGAGAAGGTGCTAAAGGTGCTTCGGGGTTCCAGTTCCCTAGCCTGCTT  435

seq1  GTGTAAACAGAGGCCTTCTGTTCGCTCCGAGGCTGTAACTGAAAGAGTTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAACAGAGGCCTTCTGTTCGCTCCGAGGCTGTAACTGAAAGAGTTA  485

seq1  CCACCAGGGGGCGCGAGGTGACCGTCATCGTGCCCGAAACAACGCAAAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGGGGGCGCGAGGTGACCGTCATCGTGCCCGAAACAACGCAAAGC  535

seq1  CCGGAAGCTTGGCTGGGGCCACCAGGGCAGGAACACACAGGCTTCTCCTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAAGCTTGGCTGGGGCCACCAGGGCAGGAACACACAGGCTTCTCCTA  585

seq1  GTTGGTGGAGCGGGATCCATGAATGAAGAAGGCACAGAGAATCCAACGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGGAGCGGGATCCATGAATGAAGAAGGCACAGAGAATCCAACGTG  635

seq1  TGGCTCTGGTGTGACGCTTGAGGTCCCAAGCCCCGCTGCGTCTATCTTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGGTGTGACGCTTGAGGTCCCAAGCCCCGCTGCGTCTATCTTTT  685

seq1  CACCAGTCCAGAGTGAAACTGCACCTCTGTTACGACAGTGCAAAGAGCTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTCCAGAGTGAAACTGCACCTCTGTTACGACAGTGCAAAGAGCTA  735

seq1  GCCGCCGAATGCTTTCCATTTTCAATGTCCCCAGTTCGCCCCTCACTCAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCGAATGCTTTCCATTTTCAATGTCCCCAGTTCGCCCCTCACTCAT  785

seq1  GATTAGCCCGGGGGAAACTGCTGATGGGAAGAACATCGAGGGTACCTCCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGCCCGGGGGAAACTGCTGATGGGAAGAACATCGAGGGTACCTCCC  835

seq1  ACTGCCGACCCCAGATCACAAAGATTTTGAAACAGTGCTCGCGGTTTCCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCGACCCCAGATCACAAAGATTTTGAAACAGTGCTCGCGGTTTCCT  885

seq1  AAGTGCAAACTGGGAGCTGTGAAAGCTGCCTGCCTCAGTTTACCGAGGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAAACTGGGAGCTGTGAAAGCTGCCTGCCTCAGTTTACCGAGGTT  935

seq1  TAGTTAGAATCTGAGCCTAGAGAATAAGAAACCAGGGACTCTCGGAAGAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGAATCTGAGCCTAGAGAATAAGAAACCAGGGACTCTCGGAAGAT  985

seq1  GTAAACCTTGGTGTCATTGCTTGGAGCTCTGCCACCTTGTGCAAACTCCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCTTGGTGTCATTGCTTGGAGCTCTGCCACCTTGTGCAAACTCCC  1035

seq1  TGGCCCTCTAAGATTCCCTGTTCTCCCTTAGAGTCCCAAGAGTACCCCCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTCTAAGATTCCCTGTTCTCCCTTAGAGTCCCAAGAGTACCCCCT  1085

seq1  TTCAAGGCTAGGACCCAGAGGGCAGTCCTCTGTGGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGCTAGGACCCAGAGGGCAGTCCTCTGTGGAATTC  1125