BAC Information

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BAC

Clone NameB6Ng01-070J17
Chromosome14 (Build37)
Map Location 78,166,993 - 78,226,915
singlet/doubletdoublet
Overlap geneGm1587, Dnajc15
Upstream geneLOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, D230005D02Rik, LOC100043755, LOC676171, EG629678
Downstream geneEpsti1, AU021034, Tnfsf11, LOC219180, Akap11, Dgkh, LOC673649
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070J17.bB6Ng01-070J17.g
ACCDH888562DH888563
length1,1621,134
definitionDH888562|Mus musculus domesticus DNA, BAC clone: B6Ng01-070J17, 5' end.DH888563|Mus musculus domesticus DNA, BAC clone: B6Ng01-070J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,166,993 - 78,168,185)(78,225,763 - 78,226,915)
sequence
gaattctctcattaggaagctagacagatgtcagagggcttggaggccat
tgagatggaccctgcctcctgtttccttggaaactctagaaaaggaaaat
ccttagcatttaaatgagcataggacaagttggaggaatccaggcttctg
tgaggctctttaaggcaaagcactcttcctgctaagaagagcaaatctaa
gatctacctctggccatgcgtgtagacctggcatcccaaggtaccccaac
cattacacactatcatttttttctccttttaaaagtacatggctaaacga
ggccatgactgctcctaggtatggttgaggagaagatatattgtagatat
gagacatctggaagaatccagagcctgaactgggctagcagtatgaactg
ggtcctcatgcatgcaggagataggaccagaagccaagaggccaggtgtg
agtcaggaggccaaagactgcttgaccaaaatggctgaggttatgtagga
atcatagactggaggaagggaagcccagacacttagagggagaggtttag
ggtagagggtattgcaaaatctgggaggagtcacaggtattgagacttgt
ccctggcttctctgggacttggcaaacagatgattccattttgcctgtca
atcagtcaatcagttggctagaattccaactctacctacctccaccccaa
taaatcctatccccctgaagatgtaagataatggaggactaattacttcc
ttaataaaaatcatgcacttcttcccagtagccctccctcagtgtagaca
cttgtggatatttgtagaacttcccatcaggcagtgctgaaagagctttc
ttgatctgaattctcactcagaaaagtagtcctttttctttcagctactg
actaaagcctggacccgctgtgcattctctcacatgcacccctcccaccc
cacccatgtgactggttcaagagtccacggcagacagctggtttcttcta
cttcttcactccctccttcgagcagctgcaagatttacaatttgctgctg
tgttttcctctcacctttaaatacttgtatcatgagcatacccaaaagag
gatctgaattctttgtacatgatgtcatgaaggatccagtttcatggcac
atttatatactg
gaattcattgcaaagaactctaaaaatgaactgatttaattttatttgag
gacattgtaaatctaagattccattataaatgttgtaatagaatcatttc
agagaacagggagaatttcttttagcattatttttattatcactgttatt
attgttagttcatttatcataccactacatattatacatttgccttttat
gaatgcatttattttttgaaattatgataagacatgaaaagattccctta
gatgaatttgcctccttcttaaaggaatgaatatttattgcttttaaaat
gtagctatggggaaacttttattttgtttaattaataatatatgtaattt
tagaaaatattctggccaaacatctatatggtaactatttataaccagtg
ggtatttttcaagtggttactttttttttctcataaaatgtattttgatt
gttgggtacctgcaatacttccctaaataagtttaatttgtgctgttttg
atttctggtaatcatataaaatattttctcaggaaaaatgtgtgagaaaa
tacctgaattattgtttttctgtattgacttttttaaatgtcagtaatga
tgtaaaccttaatcattcgtttgtctttgtcctcccaggtggatctcctt
acttagcatccaaaataaatgaagcaaaagatttgctcgaagcatccagc
aaagctaactgatgctaaaggactgtacataccgagggaaaatggaacaa
acgcacagctgtaaaagtccttcagaagaatgtggcacgtggtcgtgttc
catactgacccagtctgttttctgtcattaagtgtgcagcaataaaagcc
tggcagccttgcagccttggtctggcagggacttcatccgtcccatagct
gatgcttttccacatcatttcatatgtgacatgtcaccttggtgatggta
gtctaaccctctctctgccctaacacagagaagttctgcccttcacatgg
cattgggatttctggcagacggaagcttcctctcgatgcttctgcactgt
cttctgcttagaagaatttgggactctgcatggcaagcttaaatatttga
gaacaaagtgactactactcatgggaagatccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_78166993_78168185
seq2: B6Ng01-070J17.b_39_1200

seq1  GAATTCTCTCATTAGGAAGCTAGACAGATGTCAGAGGGCTTGGAGGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCATTAGGAAGCTAGACAGATGTCAGAGGGCTTGGAGGCCAT  50

seq1  TGAGATGGACCCTGCCTCCTGTTTCCTTGGAAACTCTAGAAAAGGAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGGACCCTGCCTCCTGTTTCCTTGGAAACTCTAGAAAAGGAAAAT  100

seq1  CCTTAGCATTTAAATGAGCATAGGACAAGTTGGAGGAATCCAGGCTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCATTTAAATGAGCATAGGACAAGTTGGAGGAATCCAGGCTTCTG  150

seq1  TGAGGCTCTTTAAGGCAAAGCACTCTTCCTGCTAAGAAGAGCAAATCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTCTTTAAGGCAAAGCACTCTTCCTGCTAAGAAGAGCAAATCTAA  200

seq1  GATCTACCTCTGGCCATGCGTGTAGACCTGGCATCCCAAGGTACCCCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTACCTCTGGCCATGCGTGTAGACCTGGCATCCCAAGGTACCCCAAC  250

seq1  CATTACACACTATCATTTTTTTCTCCTTTTAAAAGTACATGGCTAAACGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACACACTATCATTTTTTTCTCCTTTTAAAAGTACATGGCTAAACGA  300

seq1  GGCCATGACTGCTCCTAGGTATGGTTGAGGAGAAGATATATTGTAGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGACTGCTCCTAGGTATGGTTGAGGAGAAGATATATTGTAGATAT  350

seq1  GAGACATCTGGAAGAATCCAGAGCCTGAACTGGGCTAGCAGTATGAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATCTGGAAGAATCCAGAGCCTGAACTGGGCTAGCAGTATGAACTG  400

seq1  GGTCCTCATGCATGCAGGAGATAGGACCAGAAGCCAAGAGGCCAGGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCATGCATGCAGGAGATAGGACCAGAAGCCAAGAGGCCAGGTGTG  450

seq1  AGTCAGGAGGCCAAAGACTGCTTGACCAAAATGGCTGAGGTTATGTAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGAGGCCAAAGACTGCTTGACCAAAATGGCTGAGGTTATGTAGGA  500

seq1  ATCATAGACTGGAGGAAGGGAAGCCCAGACACTTAGAGGGAGAGGTTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGACTGGAGGAAGGGAAGCCCAGACACTTAGAGGGAGAGGTTTAG  550

seq1  GGTAGAGGGTATTGCAAAATCTGGGAGGAGTCACAGGTATTGAGACTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGGGTATTGCAAAATCTGGGAGGAGTCACAGGTATTGAGACTTGT  600

seq1  CCCTGGCTTCTCTGGGACTTGGCAAACAGATGATTCCATTTTGCCTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTTCTCTGGGACTTGGCAAACAGATGATTCCATTTTGCCTGTCA  650

seq1  ATCAGTCAATCAGTTGGCTAGAATTCCAACTCTACCTACCTCCACCCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCAATCAGTTGGCTAGAATTCCAACTCTACCTACCTCCACCCCAA  700

seq1  TAAATCCTATCCCCCTGAAGATGTAAGATAATGGAGGACTAATTACTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCTATCCCCCTGAAGATGTAAGATAATGGAGGACTAATTACTTCC  750

seq1  TTAATAAAAATCATGCACTTCTTCCCAGTAGCCCTCCCTCAGTGTAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAAATCATGCACTTCTTCCCAGTAGCCCTCCCTCAGTGTAGACA  800

seq1  CTTGTGGATATTTGTAGAACTTCCCATCAGGCAGTGCTGAAAGAGCTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGATATTTGTAGAACTTCCCATCAGGCAGTGCTGAAAGAGCTTTC  850

seq1  TTGATCTGAATTCTCACTCAGAAAAGTAGTCCTTTTTCTTTCAGCTACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTGAATTCTCACTCAGAAAAGTAGTCCTTTTTCTTTCAGCTACTG  900

seq1  ACTAAAGCCTGGACCCGCTGTGCATTCTCTCACATGCACCCCTCCCCACC  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACTAAAGCCTGGACCCGCTGTGCATTCTCTCACATGCACCCCT-CCCACC  949

seq1  CCACCCATGTGACTGGTTCAAGAGTCCACGGCAGACAGCCTGGGTTTCTT  1000
      |||||||||||||||||||||||||||||||||||||||   ||||||||
seq2  CCACCCATGTGACTGGTTCAAGAGTCCACGGCAGACAGC--TGGTTTCTT  997

seq1  CTACTTCTTCACCTCCCTCCTCCGAGCAGCTGCCAAGATTTACAATTTGC  1050
      ||||||||||| ||||||||| |||||||||| |||||||||||||||| 
seq2  CTACTTCTTCA-CTCCCTCCTTCGAGCAGCTG-CAAGATTTACAATTTG-  1044

seq1  CTGCCTGGTTGTTTTCCTCTCAACCTTTAAATACTTGTATCAATGAGGCC  1100
      ||| |||  |||||||||||| ||||||||||||||||||| |||||  |
seq2  CTG-CTG--TGTTTTCCTCTC-ACCTTTAAATACTTGTATC-ATGAG--C  1087

seq1  AATAACCCAAAAGAGGGATCCTGAATTCCCTTTGTAACCAATGATGGTCC  1150
      |   |||||||||| |||| |||||||  |||||||    ||||||   |
seq2  A--TACCCAAAAGA-GGAT-CTGAATT--CTTTGTA---CATGATG--TC  1126

seq1  ATGATGGGTTCCCAAGTATCCATGGCAACATTTTTATATACTG  1193
      |||| || |   | ||| | |||||| |||  |||||||||||
seq2  ATGAAGGAT---CCAGT-TTCATGGC-ACA--TTTATATACTG  1162

seq1: chr14_78225763_78226915
seq2: B6Ng01-070J17.g_65_1198 (reverse)

seq1  TGGGATCTTTTCCCCATGATGTAGTAGTCACTGTTTGGTCTCAAAATATT  50
      |||||||||   ||||||| |||||||||||  |||| |||| |||||||
seq2  TGGGATCTT---CCCATGA-GTAGTAGTCAC--TTTGTTCTC-AAATATT  43

seq1  TAAAGGCTTTGGCATTGGCAGAGTCCCAAATTCTTCTAAAGCAAGAGACA  100
      |||  || ||| |||  |||||||||||||||||||| |||||  |||||
seq2  TAA--GC-TTGCCAT--GCAGAGTCCCAAATTCTTCT-AAGCAGAAGACA  87

seq1  GTGCAGAAGCATCGAGAAGGAAGCTTCCGTTCTGGCCAGAAATCCCAATG  150
      |||||||||||||||| |||||||||||| ||| ||||||||||||||||
seq2  GTGCAGAAGCATCGAG-AGGAAGCTTCCG-TCT-GCCAGAAATCCCAATG  134

seq1  CCATTGTGAAGGGCAGAACTTTCTCTGTGTTAGGGGCAGAGAGAGGGTTA  200
      ||| ||||||||||||||| |||||||||||| |||||||||||||||||
seq2  CCA-TGTGAAGGGCAGAAC-TTCTCTGTGTTA-GGGCAGAGAGAGGGTTA  181

seq1  GACTACCATCACCAAGGTGACATGTCACATATGAAATGATGTGGAAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACCATCACCAAGGTGACATGTCACATATGAAATGATGTGGAAAAGC  231

seq1  ATCAGCTATGGGACGGATGAAGTCCCTGCCAGACCAAGGCTGCAAGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTATGGGACGGATGAAGTCCCTGCCAGACCAAGGCTGCAAGGCTG  281

seq1  CCAGGCTTTTATTGCTGCACACTTAATGACAGAAAACAGACTGGGTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTTTTATTGCTGCACACTTAATGACAGAAAACAGACTGGGTCAGT  331

seq1  ATGGAACACGACCACGTGCCACATTCTTCTGAAGGACTTTTACAGCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACACGACCACGTGCCACATTCTTCTGAAGGACTTTTACAGCTGTG  381

seq1  CGTTTGTTCCATTTTCCCTCGGTATGTACAGTCCTTTAGCATCAGTTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGTTCCATTTTCCCTCGGTATGTACAGTCCTTTAGCATCAGTTAGC  431

seq1  TTTGCTGGATGCTTCGAGCAAATCTTTTGCTTCATTTATTTTGGATGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGGATGCTTCGAGCAAATCTTTTGCTTCATTTATTTTGGATGCTA  481

seq1  AGTAAGGAGATCCACCTGGGAGGACAAAGACAAACGAATGATTAAGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGAGATCCACCTGGGAGGACAAAGACAAACGAATGATTAAGGTTT  531

seq1  ACATCATTACTGACATTTAAAAAAGTCAATACAGAAAAACAATAATTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATTACTGACATTTAAAAAAGTCAATACAGAAAAACAATAATTCAG  581

seq1  GTATTTTCTCACACATTTTTCCTGAGAAAATATTTTATATGATTACCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCTCACACATTTTTCCTGAGAAAATATTTTATATGATTACCAGA  631

seq1  AATCAAAACAGCACAAATTAAACTTATTTAGGGAAGTATTGCAGGTACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAACAGCACAAATTAAACTTATTTAGGGAAGTATTGCAGGTACCC  681

seq1  AACAATCAAAATACATTTTATGAGAAAAAAAAAGTAACCACTTGAAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCAAAATACATTTTATGAGAAAAAAAAAGTAACCACTTGAAAAAT  731

seq1  ACCCACTGGTTATAAATAGTTACCATATAGATGTTTGGCCAGAATATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTGGTTATAAATAGTTACCATATAGATGTTTGGCCAGAATATTTT  781

seq1  CTAAAATTACATATATTATTAATTAAACAAAATAAAAGTTTCCCCATAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTACATATATTATTAATTAAACAAAATAAAAGTTTCCCCATAGC  831

seq1  TACATTTTAAAAGCAATAAATATTCATTCCTTTAAGAAGGAGGCAAATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTAAAAGCAATAAATATTCATTCCTTTAAGAAGGAGGCAAATTC  881

seq1  ATCTAAGGGAATCTTTTCATGTCTTATCATAATTTCAAAAAATAAATGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGGGAATCTTTTCATGTCTTATCATAATTTCAAAAAATAAATGCA  931

seq1  TTCATAAAAGGCAAATGTATAATATGTAGTGGTATGATAAATGAACTAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAAAGGCAAATGTATAATATGTAGTGGTATGATAAATGAACTAAC  981

seq1  AATAATAACAGTGATAATAAAAATAATGCTAAAAGAAATTCTCCCTGTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAACAGTGATAATAAAAATAATGCTAAAAGAAATTCTCCCTGTTC  1031

seq1  TCTGAAATGATTCTATTACAACATTTATAATGGAATCTTAGATTTACAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATGATTCTATTACAACATTTATAATGGAATCTTAGATTTACAAT  1081

seq1  GTCCTCAAATAAAATTAAATCAGTTCATTTTTAGAGTTCTTTGCAATGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAAATAAAATTAAATCAGTTCATTTTTAGAGTTCTTTGCAATGAA  1131

seq1  TTC  1153
      |||
seq2  TTC  1134