BAC Information

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BAC

Clone NameB6Ng01-071O23
Chromosome14 (Build37)
Map Location 89,225,994 - 89,227,121
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream genenone
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071O23.bB6Ng01-071O23.g
ACCDH889493DH889494
length1,1771,114
definitionDH889493|Mus musculus domesticus DNA, BAC clone: B6Ng01-071O23, 5' end.DH889494|Mus musculus domesticus DNA, BAC clone: B6Ng01-071O23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccaaatggctgagaagcacctgaaaaaaat
attcagcatccttaatcatcagagaaattcaaacaaaaacaactctgaga
ttccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggctaggatgtggagaaagaggaactttcctccattgttggt
gggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaattggacatagtactaccagaggatcccgcaatacctctcctggg
catatatccagaagatatcccaaccagtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaatagaggaatggatacaaacaatgtggtacatttacacaat
gaagtactaatcagctattaaaaagaatgaatttatgaaattcctagcca
aatggatggacctggagggcatcatcatgagtgaggtaacacaatcacaa
aagaactcaaatgatatgtacttaatgataagttgatattagcccagaaa
cttagtatacctgagatataagatacatttgcaaactacatgaaactgaa
gaagaatgaagaccaaagtgtggacacttttctccttcttagaattggaa
acaatcacccatggaaggagttacagagacaaagtttgaagctgagacaa
aaggatgaaccatctagagactgccatatccaggggtccatcccataatt
agcctccaaacgatgacaccattgcatacactagcaagcatttgctgaaa
ggactctgatatagctgtctcttgtgagactaggccagggcctagcaaac
acataagtggatgctcacagtcagctattggatggatcacagagccccca
atggaggagctagagaaagtatctaagagctaagagatctgcaaccctgt
cgatgcaacacatatgaactaaccagtacccagagctcttgactctagct
gcatatgtatcaagatgggcctagtcgtccatcacttgaagagagcctgt
tgactggcaactttatattgcccagtacaggaacgccaaggccaaaattg
gaaatgggtgttataagaaagttgcgg
gaattcttttctggtgcttcaatatataaaccactcacattgtctatata
ttgactaaaattttggctgtagcttaaatttaattttttcaattattaaa
tgggcacaaattttggatatactcattactgaaaaacatcaatagaccta
gcatcagcaagttaaggcataattttacaaaacagtttagctaagtgaga
taatatttagaaatatttgatcatttacaaagttatctatatgcaatatt
tgcttctcattatgaaatattttttaatatttaaattatctacattctat
aaaatatgtatgctaaatacatgttcagcataaaatgtgaactataaaaa
ttttcataatcatcatttacctgatttacctgaattatttgaatgctaat
gaagatctgttattgagtggcttttgtatggtacataatttcttcttttt
acttttgtgattaaacattcactctattttagatatgcctgttcactact
taatgactataagagtcaatagtgaaggtttccacatctggaaagatatg
gttgctagaaaattaatgtattccatcaccagcattcaagttaatgcaat
atccaatgaatgagaaattgagtgactatcaatcaaattgttgatgattt
atttctacttttatattttttaaactgaatatatatttagactgtacata
atcttagagctctcaatggatgactgctaacttttttttccattttttat
taggtatttagctcatttacatttccaaagctataccaaaagtcccccat
acccacccactcccactcccctacccacccactccccctttttggccctg
gcgttcccctgtactggggcatataaagtttgcgtgtccaatgggcctct
ctttccagtgatggacgactaggccatctttgatacatatgactgctact
tttatattcacacatcaaatagtgtgtgtcttctccgtcctatgcctata
gcatatttctcttgtttatattatggtatattctcaatgacttatgcata
aatgcataatgttatcttttgaaaaaaaatgtgaaggaaaagttgttata
acattatttacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_89225994_89227121
seq2: B6Ng01-071O23.g_67_1180

seq1  GAATTCTTTTCTGGTGCTTCAATATATAAACCACTCACATTGTCTATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTGGTGCTTCAATATATAAACCACTCACATTGTCTATATA  50

seq1  TTGACTAAAATTTTGGCTGTAGCTTAAATTTAATTTTTTCAATTATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTAAAATTTTGGCTGTAGCTTAAATTTAATTTTTTCAATTATTAAA  100

seq1  TGGGCACAAATTTTGGATATACTCATTACTGAAAAACATCAATAGACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACAAATTTTGGATATACTCATTACTGAAAAACATCAATAGACCTA  150

seq1  GCATCAGCAAGTTAAGGCATAATTTTACAAAACAGTTTAGCTAAGTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGCAAGTTAAGGCATAATTTTACAAAACAGTTTAGCTAAGTGAGA  200

seq1  TAATATTTAGAAATATTTGATCATTTACAAAGTTATCTATATGCAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTAGAAATATTTGATCATTTACAAAGTTATCTATATGCAATATT  250

seq1  TGCTTCTCATTATGAAATATTTTTTAATATTTAAATTATCTACATTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTCATTATGAAATATTTTTTAATATTTAAATTATCTACATTCTAT  300

seq1  AAAATATGTATGCTAAATACATGTTCAGCATAAAATGTGAACTATAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTATGCTAAATACATGTTCAGCATAAAATGTGAACTATAAAAA  350

seq1  TTTTCATAATCATCATTTACCTGATTTACCTGAATTATTTGAATGCTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATAATCATCATTTACCTGATTTACCTGAATTATTTGAATGCTAAT  400

seq1  GAAGATCTGTTATTGAGTGGCTTTTGTATGGTACATAATTTCTTCTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCTGTTATTGAGTGGCTTTTGTATGGTACATAATTTCTTCTTTTT  450

seq1  ACTTTTGTGATTAAACATTCACTCTATTTTAGATATGCCTGTTCACTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTGATTAAACATTCACTCTATTTTAGATATGCCTGTTCACTACT  500

seq1  TAATGACTATAAGAGTCAATAGTGAAGGTTTCCACATCTGGAAAGATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACTATAAGAGTCAATAGTGAAGGTTTCCACATCTGGAAAGATATG  550

seq1  GTTGCTAGAAAATTAATGTATTCCATCACCAGCATTCAAGTTAATGCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTAGAAAATTAATGTATTCCATCACCAGCATTCAAGTTAATGCAAT  600

seq1  ATCCAATGAATGAGAAATTGAGTGACTATCAATCAAATTGTTGATGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATGAATGAGAAATTGAGTGACTATCAATCAAATTGTTGATGATTT  650

seq1  ATTTCTACTTTTATATTTTTTAAACTGAATATATATTTAGACTGTACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTACTTTTATATTTTTTAAACTGAATATATATTTAGACTGTACATA  700

seq1  ATCTTAGAGCTCTCAATGGATGACTGCTAACTTTTTTTTCCATTTTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGAGCTCTCAATGGATGACTGCTAACTTTTTTTTCCATTTTTTAT  750

seq1  TAGGTATTTAGCTCATTTACATTTCCAAAGCTATACCAAAAGTCCCCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTTAGCTCATTTACATTTCCAAAGCTATACCAAAAGTCCCCCAT  800

seq1  ACCCACCCACTCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCACTCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTG  850

seq1  GCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCT  900

seq1  CTTTCCAGTGATGGACGACTAGGCCATCTTTTGATACATATGACTGCTAA  950
      |||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  CTTTCCAGTGATGGACGACTAGGCCATC-TTTGATACATATGACTGCT-A  948

seq1  CTTTTATATTCAACACATCAAATAGTGTGTGTCTTCTCCGTCCTATGCCT  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATATTC-ACACATCAAATAGTGTGTGTCTTCTCCGTCCTATGCCT  997

seq1  ATAGCAATATTTCTCTTGTTTTATATTATGGTATATTCTCAAATGACTTA  1050
      ||||| |||||||||||| ||||||||||||||||||||| |||||||||
seq2  ATAGC-ATATTTCTCTTG-TTTATATTATGGTATATTCTC-AATGACTTA  1044

seq1  TGCATAATATGCATAAATGTTTATCTTTTTGAAATAAAAATGTGAAAGAA  1100
      ||||||| |||||| |||| ||||| |||||||| ||||||||||| |||
seq2  TGCATAA-ATGCAT-AATG-TTATC-TTTTGAAA-AAAAATGTGAAGGAA  1089

seq1  AAGTTTGTTATAAACATTATTTTACAAA  1128
      ||| ||||||| ||||||| ||||||||
seq2  AAG-TTGTTAT-AACATTA-TTTACAAA  1114