BAC Information

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BAC

Clone NameB6Ng01-072H16
Chromosome14 (Build37)
Map Location 27,982,919 - 28,129,574
singlet/doubletdoublet
Overlap geneLOC665333, Arhgef3, LOC100040147
Upstream geneLOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd
Downstream geneCcdc66, LOC665370, Erc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072H16.bB6Ng01-072H16.g
ACCDH889888DH889889
length1,122697
definitionDH889888|Mus musculus domesticus DNA, BAC clone: B6Ng01-072H16, 5' end.DH889889|Mus musculus domesticus DNA, BAC clone: B6Ng01-072H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,982,919 - 27,984,041)(28,128,878 - 28,129,574)
sequence
gaattcaggtcatgaaacttggatgcccagtagcagtgtatttgaaatgg
gaagtcattcttccctaggacagacaacagtgtgacggatgctgtagaat
gtgaaccatattgttcactggggctcctgctggcatgactggctctcagt
gtctgaaaatatattgttctcaacagctacgcttacgtttgtttactggc
ccattgtttgtttgctggcatatcactcctgctccctgttagtagggcat
catactgacattgtctactcctttgagtttcctgttttcacgtggtcctc
atgacacccgtacgctatttccacagccaggcagggagtgggggtgtcca
cttcaccaacccctccctcaatcctgctttatgatttctgttggcctcct
tcctgggataccccatgctcccgagctgataagcctggcatagtagttca
tgcatgggaaggcgatttaggagaatcacagtgagtctgaagccagcctg
ggctagagagtaagtcctaggttagccagggatagaatgagaccttatct
caaaaaatcaaccaatcaatgaatctagcaagcaaaagatcaatcaactc
caggcggtagtggcccatacttttaatcccagcacttgggaggctgatgc
aggtgaatctctgagtttgaggccagcctggtctacagattgagttctca
gacattgagggctatacagagaaaccctgtctcagaaaacaaaacaataa
agagcaatcaaactaatgagcagggacccaaatgtctccattggggtaaa
gcttgttctataaacagctcctgtctgttgttcaagagagctctctctgc
tatggagatcttggcacataccctggagacctttgttcttgatgactgtg
gttctttggagtcagagctcttgggatacagacacttgactgtggaaagc
taaaccaaaaggtaaggcaggggttgttaatgttcacattatctttgaat
tccttcagactcatgcacgtagaagtagcatgtgttggtttggggtatgt
tggcctaccacagcacctatatttgttggatgctagctggctagaccaat
tgcagggcaccatggtataaat
gaattcaagccaggctggaatccacagtaagacactgaaacaacaaaaat
actaacaaagcaggaaggatggtaactgggaggaagcagccattttggta
gcgatgtcttcgtgaaccctgtaaaccactcatttctccagttcctcacc
ttcctcgacctcctccttcatccctcctttttctcctccctcctcctccc
tctcatcttctttgtctttggaatctgctaaaaccaaatgaagaaatatc
gcccttctcctcccccaaatatctttccaatggcctgtgctaggaatcta
ccaactttgctcaggaacttggagttatcccatagtgtaatgttacagca
tgtgatggtgtctcattccacgaggggggagaaaaagaggagagctccaa
gcacccatggtggttggctccatgactgagaccgagtactgtgaagcttc
ctcctgggtcacctgtggctggcatggctggggtccagtctagtgtaccc
tatttttgtcccagttgctgtttatcccaacctgctccacagctctgctt
tctacgccccaggcctcggcctctctgcaccttccctagagaggcgtacc
tgaggaactcccttacagagctgatacaagcccacgttttcttccttctg
taaatgaattccagagatattccttggaaaaggagaagacaaagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_27982919_27984041
seq2: B6Ng01-072H16.b_42_1163

seq1  GAATTCAGGTCATGAAACTTGGATGCCCAGTAGCAGTGTATTTGAAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCATGAAACTTGGATGCCCAGTAGCAGTGTATTTGAAATGG  50

seq1  GAAGTCATTCTTCCCTAGGACAGACAACAGTGTGACGGATGCTGTAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCATTCTTCCCTAGGACAGACAACAGTGTGACGGATGCTGTAGAAT  100

seq1  GTGAACCATATTGTTCACTGGGGCTCCTGCTGGCATGACTGGCTCTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCATATTGTTCACTGGGGCTCCTGCTGGCATGACTGGCTCTCAGT  150

seq1  GTCTGAAAATATATTGTTCTCAACAGCTACGCTTACGTTTGTTTACTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAAATATATTGTTCTCAACAGCTACGCTTACGTTTGTTTACTGGC  200

seq1  CCATTGTTTGTTTGCTGGCATATCACTCCTGCTCCCTGTTAGTAGGGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTTGTTTGCTGGCATATCACTCCTGCTCCCTGTTAGTAGGGCAT  250

seq1  CATACTGACATTGTCTACTCCTTTGAGTTTCCTGTTTTCACGTGGTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGACATTGTCTACTCCTTTGAGTTTCCTGTTTTCACGTGGTCCTC  300

seq1  ATGACACCCGTACGCTATTTCCACAGCCAGGCAGGGAGTGGGGGTGTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACCCGTACGCTATTTCCACAGCCAGGCAGGGAGTGGGGGTGTCCA  350

seq1  CTTCACCAACCCCTCCCTCAATCCTGCTTTATGATTTCTGTTGGCCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCAACCCCTCCCTCAATCCTGCTTTATGATTTCTGTTGGCCTCCT  400

seq1  TCCTGGGATACCCCATGCTCCCGAGCTGATAAGCCTGGCATAGTAGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGATACCCCATGCTCCCGAGCTGATAAGCCTGGCATAGTAGTTCA  450

seq1  TGCATGGGAAGGCGATTTAGGAGAATCACAGTGAGTCTGAAGCCAGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGGAAGGCGATTTAGGAGAATCACAGTGAGTCTGAAGCCAGCCTG  500

seq1  GGCTAGAGAGTAAGTCCTAGGTTAGCCAGGGATAGAATGAGACCTTATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGAGAGTAAGTCCTAGGTTAGCCAGGGATAGAATGAGACCTTATCT  550

seq1  CAAAAAATCAACCAATCAATGAATCTAGCAAGCAAAAGATCAATCAACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAATCAACCAATCAATGAATCTAGCAAGCAAAAGATCAATCAACTC  600

seq1  CAGGCGGTAGTGGCCCATACTTTTAATCCCAGCACTTGGGAGGCTGATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGGTAGTGGCCCATACTTTTAATCCCAGCACTTGGGAGGCTGATGC  650

seq1  AGGTGAATCTCTGAGTTTGAGGCCAGCCTGGTCTACAGATTGAGTTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAATCTCTGAGTTTGAGGCCAGCCTGGTCTACAGATTGAGTTCTCA  700

seq1  GACATTGAGGGCTATACAGAGAAACCCTGTCTCAGAAAACAAAACAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGAGGGCTATACAGAGAAACCCTGTCTCAGAAAACAAAACAATAA  750

seq1  AGAGCAATCAAACTAATGAGCAGGGACCCAAATGTCTCCATTGGGGTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAATCAAACTAATGAGCAGGGACCCAAATGTCTCCATTGGGGTAAA  800

seq1  GCTTGTTCTATAAACAGCTCCTGTCTGTTGTTCAAGAGAGCTCTCTCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTCTATAAACAGCTCCTGTCTGTTGTTCAAGAGAGCTCTCTCTGC  850

seq1  TATGGAGATCTTGGCACATACCCTGGAGACCTTTGTTCTTGATGACTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGATCTTGGCACATACCCTGGAGACCTTTGTTCTTGATGACTGTG  900

seq1  GTTCTTTGGAGTCAGAGCTCTTGGGATACAGACACTTGACTGTGGAAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTGGAGTCAGAGCTCTTGGGATACAGACACTTGACTGTGGAAAGC  950

seq1  TAAAACCAACAGGTAAGGCAGGGGTTGTAAATGTTCAACATTAATCTTTG  1000
      | ||||||| |||||||||||||||||| ||||||| ||||| |||||||
seq2  T-AAACCAAAAGGTAAGGCAGGGGTTGTTAATGTTC-ACATT-ATCTTTG  997

seq1  AAATCCTTCAGAC-CATGCACGTAG-AGTAGCATGTGTGGGTTT-GGGTA  1047
      || |||||||||| ||||||||||| |||||||||||| ||||| |||||
seq2  AATTCCTTCAGACTCATGCACGTAGAAGTAGCATGTGTTGGTTTGGGGTA  1047

seq1  TGTGGCCCTA-CACAGCAACTATATATG-TAGATGCTAGCGTGCATAGAC  1095
      ||| | |||| ||||||| |||||| || | ||||||||| ||  |||||
seq2  TGTTGGCCTACCACAGCACCTATATTTGTTGGATGCTAGC-TGGCTAGAC  1096

seq1  CAATTGCAAGGCACACATGCAGATAAAT  1123
      |||||||| ||||| ||||   ||||||
seq2  CAATTGCAGGGCAC-CATG-GTATAAAT  1122

seq1: chr14_28128878_28129574
seq2: B6Ng01-072H16.g_68_764 (reverse)

seq1  CCCCTTTGTCTTCTCCTTTTCCAAGGAATATCTCTGGAATTCATTTACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTGTCTTCTCCTTTTCCAAGGAATATCTCTGGAATTCATTTACAG  50

seq1  AAGGAAGAAAACGTGGGCTTGTATCAGCTCTGTAAGGGAGTTCCTCAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAAAACGTGGGCTTGTATCAGCTCTGTAAGGGAGTTCCTCAGGT  100

seq1  ACGCCTCTCTAGGGAAGGTGCAGAGAGGCCGAGGCCTGGGGCGTAGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTCTCTAGGGAAGGTGCAGAGAGGCCGAGGCCTGGGGCGTAGAAAG  150

seq1  CAGAGCTGTGGAGCAGGTTGGGATAAACAGCAACTGGGACAAAAATAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGTGGAGCAGGTTGGGATAAACAGCAACTGGGACAAAAATAGGG  200

seq1  TACACTAGACTGGACCCCAGCCATGCCAGCCACAGGTGACCCAGGAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTAGACTGGACCCCAGCCATGCCAGCCACAGGTGACCCAGGAGGAA  250

seq1  GCTTCACAGTACTCGGTCTCAGTCATGGAGCCAACCACCATGGGTGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACAGTACTCGGTCTCAGTCATGGAGCCAACCACCATGGGTGCTTG  300

seq1  GAGCTCTCCTCTTTTTCTCCCCCCTCGTGGAATGAGACACCATCACATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTCCTCTTTTTCTCCCCCCTCGTGGAATGAGACACCATCACATGC  350

seq1  TGTAACATTACACTATGGGATAACTCCAAGTTCCTGAGCAAAGTTGGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACATTACACTATGGGATAACTCCAAGTTCCTGAGCAAAGTTGGTAG  400

seq1  ATTCCTAGCACAGGCCATTGGAAAGATATTTGGGGGAGGAGAAGGGCGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAGCACAGGCCATTGGAAAGATATTTGGGGGAGGAGAAGGGCGAT  450

seq1  ATTTCTTCATTTGGTTTTAGCAGATTCCAAAGACAAAGAAGATGAGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCATTTGGTTTTAGCAGATTCCAAAGACAAAGAAGATGAGAGGG  500

seq1  AGGAGGAGGGAGGAGAAAAAGGAGGGATGAAGGAGGAGGTCGAGGAAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGGGAGGAGAAAAAGGAGGGATGAAGGAGGAGGTCGAGGAAGGT  550

seq1  GAGGAACTGGAGAAATGAGTGGTTTACAGGGTTCACGAAGACATCGCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACTGGAGAAATGAGTGGTTTACAGGGTTCACGAAGACATCGCTAC  600

seq1  CAAAATGGCTGCTTCCTCCCAGTTACCATCCTTCCTGCTTTGTTAGTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGCTGCTTCCTCCCAGTTACCATCCTTCCTGCTTTGTTAGTATT  650

seq1  TTTGTTGTTTCAGTGTCTTACTGTGGATTCCAGCCTGGCTTGAATTC  697
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTTTCAGTGTCTTACTGTGGATTCCAGCCTGGCTTGAATTC  697