BAC Information

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BAC

Clone NameB6Ng01-073A02
Chromosome14 (Build37)
Map Location 43,576,474 - 43,626,177
singlet/doubletdoublet
Overlap geneLOC666370, EG666376
Upstream gene1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114
Downstream geneLOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073A02.bB6Ng01-073A02.g
ACCDH890260DH890261
length1,131989
definitionDH890260|Mus musculus domesticus DNA, BAC clone: B6Ng01-073A02, 5' end.DH890261|Mus musculus domesticus DNA, BAC clone: B6Ng01-073A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,576,474 - 43,577,609)(43,625,200 - 43,626,177)
sequence
gaattcacaatatccccagccttcttccgttctatttttgagtctatttt
tggactacctaatgctccttggagagaggcatgctggcaagtactaattt
gggtagtatttatggagattctttgcaatgtccctttgtgttacagcagt
tcaagtccttcccataccattcaatactcagaaacctcaaatacacacag
aatgataagccatgataatgtcttccaagcaataaatgcccaaaacaaaa
cagatacacaatcatattttgccacagatctttcaagaacagcaaatgtt
tgtatgagtcagaaatggaagaaacactatcagattccacaaaatcatgg
ttgcctccccctcttataaactggataacagtacaacaccatcatcgcag
ttcgcaacaactgcaatacctatatccctgaaagttatatgagcttaaca
agcagttgaaaattgaattccagaacaaatttaaaaccatgttggtgtgc
tgggcatggtggtgcatgcctgtaatctcagcactcaggaggcagaggca
ggtggatttctgcattcagttcaaggtaatcctagtctacaaagtgagct
ccaggacagccagagctatacagagacaccctgtcttaaaaacaaacaaa
caaacaaagaaatgccttgtgtagtagcataagaatactttaatctctgc
acttgaaaggcagcacttgcaggcagatatctgtgagtttgaggccaata
tggtcccatgagtcccaaaacaggcagggcttcatagagagaacctatct
caaagaataaataaatttaaaaataaagttctatacacacaatgaaaatg
tgatatagttatgcaaggataacacaatagatgtaaatcaaataatgtat
ctcagcacaaaaatagtctcaaaaattaatagttgaattgtcatctcagt
acttgcagaaaatgcattgcacatgtccatcatcacctcatgataaaatt
cctgaagaaactaggaataggagaaaacatgcctcaaccgaataaatctt
ctattcacaaacatagtcaacattatagtatgggagagaagaaaaagtct
tgtataattagacagaccagggtatacattc
gaattcaggctatgtcctggactaccctcatgcagtggctgccacattct
gcctcctatatactgagagcttctggtgcttattaaactaagtatcctga
tgccaggacaacacaggttgggaatccttagttagagatcaagggcttca
agacctccctcataggcctggaaggaaacccttctaaaatgttcccagga
agtctgtgccacagggtgtggcccacctcaaccctgttaccacatttttt
tcttcagaacacagattctcagttgtaggttcttattgctacacagctac
ccgagcaaaaaaaaaaaataagtatttgcagggaggagactcaatatcag
gatggctatatataatcctcatgggatttcaatgtgccatcaaggtgaac
atatagacaaagagcagtgctgactaaggtgggattccctgcgcatggaa
acagcatcaccttgcaacaggccccactgtagactccagattccaaggat
gcatagacccatgggggacataagcacatatacacacacagacatacaca
cacacacagacacacacacaggcacacacacacacaattggtcctctatg
aggagtccatgtctgtaggcttttgctacactgcatccttggtgtattgc
tttaaggtccatggatgtctgatagcaaaaatcaagaaaagaatataccc
ctggacatatttcaagttctgagacatttactactttcatcttagacaca
ggcaatcacagcttggtggtgctaagcactagggaatccaggacttactt
gcatcacatcagatactagctgacattgccctttcagcacagcatggctg
gctagctttatgccatccagagccagtaggactgcagtatgtgctgaggt
acctgactagccacaggggttgggaacatatcctatcttgagaacagctg
ccctgatttaggccagaagtgggagggaagggagtgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_43576474_43577609
seq2: B6Ng01-073A02.b_42_1172

seq1  GAATTCACAATATCCCCAGCCTTCTTCCGTTCTATTTTTGAGTCTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAATATCCCCAGCCTTCTTCCGTTCTATTTTTGAGTCTATTTT  50

seq1  TGGACTACCTAATGCTCCTTGGAGAGAGGCATGCTGGCAAGTACTAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTACCTAATGCTCCTTGGAGAGAGGCATGCTGGCAAGTACTAATTT  100

seq1  GGGTAGTATTTATGGAGATTCTTTGCAATGTCCCTTTGTGTTACAGCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGTATTTATGGAGATTCTTTGCAATGTCCCTTTGTGTTACAGCAGT  150

seq1  TCAAGTCCTTCCCATACCATTCAATACTCAGAAACCTCAAATACACACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCCTTCCCATACCATTCAATACTCAGAAACCTCAAATACACACAG  200

seq1  AATGATAAGCCATGATAATGTCTTCCAAGCAATAAATGCCCAAAACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAAGCCATGATAATGTCTTCCAAGCAATAAATGCCCAAAACAAAA  250

seq1  CAGATACACAATCATATTTTGCCACAGATCTTTCAAGAACAGCAAATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACACAATCATATTTTGCCACAGATCTTTCAAGAACAGCAAATGTT  300

seq1  TGTATGAGTCAGAAATGGAAGAAACACTATCAGATTCCACAAAATCATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAGTCAGAAATGGAAGAAACACTATCAGATTCCACAAAATCATGG  350

seq1  TTGCCTCCCCCTCTTATAAACTGGATAACAGTACAACACCATCATCGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCCCCCTCTTATAAACTGGATAACAGTACAACACCATCATCGCAG  400

seq1  TTCGCAACAACTGCAATACCTATATCCCTGAAAGTTATATGAGCTTAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCAACAACTGCAATACCTATATCCCTGAAAGTTATATGAGCTTAACA  450

seq1  AGCAGTTGAAAATTGAATTCCAGAACAAATTTAAAACCATGTTGGTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTGAAAATTGAATTCCAGAACAAATTTAAAACCATGTTGGTGTGC  500

seq1  TGGGCATGGTGGTGCATGCCTGTAATCTCAGCACTCAGGAGGCAGAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATGGTGGTGCATGCCTGTAATCTCAGCACTCAGGAGGCAGAGGCA  550

seq1  GGTGGATTTCTGCATTCAGTTCAAGGTAATCCTAGTCTACAAAGTGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATTTCTGCATTCAGTTCAAGGTAATCCTAGTCTACAAAGTGAGCT  600

seq1  CCAGGACAGCCAGAGCTATACAGAGACACCCTGTCTTAAAAACAAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACAGCCAGAGCTATACAGAGACACCCTGTCTTAAAAACAAACAAA  650

seq1  CAAACAAAGAAATGCCTTGTGTAGTAGCATAAGAATACTTTAATCTCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAGAAATGCCTTGTGTAGTAGCATAAGAATACTTTAATCTCTGC  700

seq1  ACTTGAAAGGCAGCACTTGCAGGCAGATATCTGTGAGTTTGAGGCCAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAAGGCAGCACTTGCAGGCAGATATCTGTGAGTTTGAGGCCAATA  750

seq1  TGGTCCCATGAGTCCCAAAACAGGCAGGGCTTCATAGAGAGAACCTATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCATGAGTCCCAAAACAGGCAGGGCTTCATAGAGAGAACCTATCT  800

seq1  CAAAGAATAAATAAATTTAAAAATAAAGTTCTATACACACAATGAAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATAAATAAATTTAAAAATAAAGTTCTATACACACAATGAAAATG  850

seq1  TGATATAGTTATGCAAGGATAACACAATAGATGTAAATCAAATAAATGTA  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGATATAGTTATGCAAGGATAACACAATAGATGTAAATCAAAT-AATGTA  899

seq1  TCTCAGCACAAAAATAGTCTCAAAAATTAATAGTTGAATTGTCATCTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCACAAAAATAGTCTCAAAAATTAATAGTTGAATTGTCATCTCAG  949

seq1  TACCTGCAGAAAATGCATTGCACATGTCCATCATCACCTCATGATAAAAT  1000
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCAGAAAATGCATTGCACATGTCCATCATCACCTCATGATAAAAT  999

seq1  TCCTGAAGAAACTAGGAATAGGAG-AAACATGCCTCAACCGAATAAATCT  1049
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCCTGAAGAAACTAGGAATAGGAGAAAACATGCCTCAACCGAATAAATCT  1049

seq1  TCTATTCAACAAACATAGTCAACATTATAGTAATGGGAGAG-AGAAAAAG  1098
      ||||||| ||||||||||||||||||||||| ||||||||| ||||||||
seq2  TCTATTC-ACAAACATAGTCAACATTATAGT-ATGGGAGAGAAGAAAAAG  1097

seq1  TCTGTATAAAATAAGAAACAAGACCAGGGTATACATTC  1136
      ||| | || ||| |||    ||||||||||||||||||
seq2  TCT-TGTATAATTAGA---CAGACCAGGGTATACATTC  1131

seq1: chr14_43625200_43626177
seq2: B6Ng01-073A02.g_67_1055 (reverse)

seq1  ACCCACTCCC-TCCCTCCCACTTCTTGGCCTAAAATCAGGGCAGCTGTTC  49
      |||||||||| ||||||||||||| |||||| ||||||||||||||||||
seq2  ACCCACTCCCTTCCCTCCCACTTC-TGGCCT-AAATCAGGGCAGCTGTTC  48

seq1  TCAAGATAGGATATTGTTCCCAACCCCTGTGGCTAGTCAGGTACCTCAGC  99
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCAAGATAGGATA-TGTTCCCAACCCCTGTGGCTAGTCAGGTACCTCAGC  97

seq1  ACATACTGCAGTCCTACTGGCTCTGGATGGCAT-AAGTTAGCCAGCCATG  148
      ||||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  ACATACTGCAGTCCTACTGGCTCTGGATGGCATAAAGCTAGCCAGCCATG  147

seq1  CTGTGCTTGGAGGGCAATGTCAGCTAGTATCTGATGTGATGCAAGTAAGT  198
      |||||||   ||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGAAAGGGCAATGTCAGCTAGTATCTGATGTGATGCAAGTAAGT  197

seq1  CCTGGATTCCCTAGTGCTTAGCACCACCAAGCTGTGATTGCCTGTGTCTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATTCCCTAGTGCTTAGCACCACCAAGCTGTGATTGCCTGTGTCTA  247

seq1  AGATGAAAGTAGTAAATGTCTCAGAACTTGAAATATGTCCAGGGGTATAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAGTAGTAAATGTCTCAGAACTTGAAATATGTCCAGGGGTATAT  297

seq1  TCTTTTCTTGATTTTTGCTATTAGACATCCATGGACCTTAAAGAAATACA  348
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  TCTTTTCTTGATTTTTGCTATCAGACATCCATGGACCTTAAAGCAATACA  347

seq1  CCAAGGATGCAGTGTAGCAAAAGCCTACAGACATGGACTCCTCATAGAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGATGCAGTGTAGCAAAAGCCTACAGACATGGACTCCTCATAGAGG  397

seq1  ACCAATTGTGTGTGTGTGTGCCTGTG--------TGTGTGTGTGTGTATG  440
      ||||||||||||||||||||||||||        ||||||||||||||||
seq2  ACCAATTGTGTGTGTGTGTGCCTGTGTGTGTGTCTGTGTGTGTGTGTATG  447

seq1  TCTGTGTGTGTATATGTGCTTATGTACCCCATGGGTCTATGCATCCTTGG  490
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTGTGTGTGTATATGTGCTTATGTCCCCCATGGGTCTATGCATCCTTGG  497

seq1  AATCTGGAGTCTACAGTGGGGCCTGTTGCAAGGTGATGCTGTCTCCATGC  540
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AATCTGGAGTCTACAGTGGGGCCTGTTGCAAGGTGATGCTGTTTCCATGC  547

seq1  GCAGGGAATCCCACCTTAGTCAGCACTGCTCTTTGTCTATATGTTCACCT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAATCCCACCTTAGTCAGCACTGCTCTTTGTCTATATGTTCACCT  597

seq1  TGATGGCACATTGAAATCCCATGAGGATTATATATAGCCATCGTGATATT  640
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGATGGCACATTGAAATCCCATGAGGATTATATATAGCCATCCTGATATT  647

seq1  GAGTCTCCTCCCTGCAAATACTGA----TTTTTTTTGCTCTGGGTAGCTG  686
      |||||||||||||||||||||| |    |||||||||||| |||||||||
seq2  GAGTCTCCTCCCTGCAAATACTTATTTTTTTTTTTTGCTC-GGGTAGCTG  696

seq1  TGTAGCAATAAGAACCTACAACTGAGAATCTGTGTTCTGAAG-AAAAAAT  735
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTAGCAATAAGAACCTACAACTGAGAATCTGTGTTCTGAAGAAAAAAAT  746

seq1  GTGGTAACAGGGTTGAGGTGGGCCACACCCTGTGGCACAGACTTCCTGGG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAACAGGGTTGAGGTGGGCCACACCCTGTGGCACAGACTTCCTGGG  796

seq1  AACATTTTAGAAGGGTTTCCTTCCAGGCCTATGAGGGAGGTCTTGAAGCC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTAGAAGGGTTTCCTTCCAGGCCTATGAGGGAGGTCTTGAAGCC  846

seq1  CTTGATCTCTAACTAAGGATTCCCAACCTGTGTTGTCCTGGCATCAAGAT  885
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTGATCTCTAACTAAGGATTCCCAACCTGTGTTGTCCTGGCATCAGGAT  896

seq1  ACTTAGTTTAATAAGCACCAGAAGGTCTCAGTATATAGGAAGCAGAATTT  935
      |||||||||||||||||||||||| ||||||||||||||| ||||||| |
seq2  ACTTAGTTTAATAAGCACCAGAAGCTCTCAGTATATAGGAGGCAGAATGT  946

seq1  GGCAGCCACTGCATGATGGTAGTCCAGAACATAGCCTGAATTC  978
      |||||||||||||||| |||||||||| |||||||||||||||
seq2  GGCAGCCACTGCATGAGGGTAGTCCAGGACATAGCCTGAATTC  989