BAC Information

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BAC

Clone NameB6Ng01-073G14
Chromosome14 (Build37)
Map Location 89,225,994 - 89,359,028
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073G14.bB6Ng01-073G14.g
ACCDH890552DH890553
length1,1521,152
definitionDH890552|Mus musculus domesticus DNA, BAC clone: B6Ng01-073G14, 5' end.DH890553|Mus musculus domesticus DNA, BAC clone: B6Ng01-073G14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,357,876 - 89,359,028)(89,225,994 - 89,227,144)
sequence
gaattctatgtgccacttaaattatattatagttgcaaatgcaagttttt
tcattggttccttttcttgttcttgtatgttcatttattgaaagcttagt
aaatttttgggaaacttttaacatcttagaaattatcttacactttctaa
tattgaaaattaccactgagttgtaaagttttcttgcattatgtatatga
gacaactcagtcttgttcctggctagtttttgctgaattttgtagttata
ctacagatgtgagaatgaagacttgctaaaagcttaattaagatttgtta
aatgacggcatagaatggaattttgtattgcttatttgttacaataatta
ttatatagtccttacagaacatttttacttcaaaatacagtaagtaatta
ccatacacaaaagaacaaaatctgttttcttgaaaggtaataattggatc
tgctttttgtttaaaatggaaaaaaagaataaatctaaagcataattttt
atataaatcttcatattttcatttaaatatatacactgttattttattaa
gccaaataactatcttttaaaaagtttaggtatgaatgactttatatatt
atttatgaaatgattgttttatattcctatattagtttttcttagttcat
tgacttgactttcttcccaatatattttttctgtttcatattattgaggt
tatatgtgagggttaaagtacagatttaaaaccttgagggttctgggcgc
agtaaatctaaagataattaaattgctaatacttcttagctaaatgacca
aaaaagaattatctaatttgctaaacctcaattatcttaccaatagcatt
tgcattagaaaaggattatgaagtaaacaatctcattaagtcatcaatcg
ataaatgttattgtgggtcatgagcatactgaagtctgattcaatgaata
gacagtcatcaggcagttttacataaagtcagacttctcaccaggatgca
gcctcaattgttccaaaaccaattgcttgcctgaataagaagcattcaca
atccaccctacagtataacctgcataaaaacaaatgacttctcctttagt
taatagttcaccaagatgaataaaagtttctttaacatccatggtgaagt
aa
gaattcttttctggtgcttcaatatataaaccactcacattgtctatata
ttgactaaaattttggctgtagcttaaatttaattttttcaattattaaa
tgggcacaaattttggatatactcattactgaaaaacatcaatagaccta
gcatcagcaagttaaggcataattttacaaaacagtttagctaagtgaga
taatatttagaaatatttgatcatttacaaagttatctatatgcaatatt
tgcttctcattatgaaatattttttaatatttaaattatctacattctat
aaaatatgtatgctaaatacatgttcagcataaaatgtgaactataaaaa
ttttcataatcatcatttacctgatttacctgaattatttgaatgctaat
gaagatctgttattgagtggcttttgtatggtacataatttcttcttttt
acttttgtgattaaacattcactctattttagatatgcctgttcactact
taatgactataagagtcaatagtgaaggtttccacatctggaaagatatg
gttgctagaaaattaatgtattccatcaccagcattcaagttaatgcaat
atccaatgaatgagaaattgagtgactatcaatcaaattgttgatgattt
atttctactttttatattttttaaactgaatatatatttagactgtacat
aatctttagagctctcaatggatgactgctaactttttttttccattttt
ttattaggtatttagctcatttacatttccaaagctataccaaaaagtcc
cccatacccacccactcccactcccctacccacccactccccctttttgg
ccctggcgttccccttgtactggggcatataaagtttgcgtgtccaatgg
gcctctctttccagtgatggacgactaggccatcttttgatacatatgac
tgctaacttttatatcaacacttcaaatagtgtgtgtcttctccgtccta
tgcctatagcatatttctcttgttttatatatgggatattctcaatgact
tatgcataatatgcataatgtttatctttttggaataaaatgtggaagag
aaagtttgttataaactttattttacaaaggtagacagcttggcacttta
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_89357876_89359028
seq2: B6Ng01-073G14.b_46_1197 (reverse)

seq1  TTACTTCACATTGATTGTTAAAGAAACTTTTATTCATCTTGTTGAACTAT  50
      |||||||||  ||  |||||||||||||||||||||||||| ||||||||
seq2  TTACTTCACCATGGATGTTAAAGAAACTTTTATTCATCTTGGTGAACTAT  50

seq1  T-ACTAAA-GAG-AGTCATTTGTTTTTATGCAGGTTTATACTGTAGGGTG  97
      | |||||| ||| ||||||||||||||||||||| |||||||||||||||
seq2  TAACTAAAGGAGAAGTCATTTGTTTTTATGCAGG-TTATACTGTAGGGTG  99

seq1  GATTTGTGAATTGCTTCTTATTCAGGCAAGCAATTGGTTTTGTGAACAAT  147
      || ||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  GA-TTGTGAA-TGCTTCTTATTCAGGCAAGCAATTGGTTTTG-GAACAAT  146

seq1  TGA-GCTGCATCCTGGTGAGAAGTCTGACTTTATGTATAACTGCCTGATG  196
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGAGGCTGCATCCTGGTGAGAAGTCTGACTTTATGTAAAACTGCCTGATG  196

seq1  ACTGTCTATTCATTGAATCAGACTTCAGTATGCTCATGACCCACAATAAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTATTCATTGAATCAGACTTCAGTATGCTCATGACCCACAATAAC  246

seq1  ATTTATCGATTGATGACTTAATGAGAATTGTTTACTTCATAATCCTTTTC  296
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTTATCGATTGATGACTTAATGAG-ATTGTTTACTTCATAATCCTTTTC  295

seq1  TAATGCAAATGCTATTGGTAAGATAATTGAGGTTTAGCAAATTAGATAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAAATGCTATTGGTAAGATAATTGAGGTTTAGCAAATTAGATAAT  345

seq1  TCTTTTTTGGTCATTTAGCTAAGAAGTATTAGCAATTTAATTATCTTTAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTGGTCATTTAGCTAAGAAGTATTAGCAATTTAATTATCTTTAG  395

seq1  ATTTACTGCGCCCAGAACCCTCAAGGTTTTAAATCTGTACTTTAACCCTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGCGCCCAGAACCCTCAAGGTTTTAAATCTGTACTTTAACCCTC  445

seq1  ACATATAACCTCAATAATATGAAACAGAAAAAATATATTGGGAAGAAAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAACCTCAATAATATGAAACAGAAAAAATATATTGGGAAGAAAGT  495

seq1  CAAGTCAATGAACTAAGAAAAACTAATATAGGAATATAAAACAATCATTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAATGAACTAAGAAAAACTAATATAGGAATATAAAACAATCATTT  545

seq1  CATAAATAATATATAAAGTCATTCATACCTAAACTTTTTAAAAGATAGTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATAATATATAAAGTCATTCATACCTAAACTTTTTAAAAGATAGTT  595

seq1  ATTTGGCTTAATAAAATAACAGTGTATATATTTAAATGAAAATATGAAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCTTAATAAAATAACAGTGTATATATTTAAATGAAAATATGAAGA  645

seq1  TTTATATAAAAATTATGCTTTAGATTTATTCTTTTTTTCCATTTTAAACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATAAAAATTATGCTTTAGATTTATTCTTTTTTTCCATTTTAAACA  695

seq1  AAAAGCAGATCCAATTATTACCTTTCAAGAAAACAGATTTTGTTCTTTTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGATCCAATTATTACCTTTCAAGAAAACAGATTTTGTTCTTTTG  745

seq1  TGTATGGTAATTACTTACTGTATTTTGAAGTAAAAATGTTCTGTAAGGAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGTAATTACTTACTGTATTTTGAAGTAAAAATGTTCTGTAAGGAC  795

seq1  TATATAATAATTATTGTAACAAATAAGCAATACAAAATTCCATTCTATGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATAATTATTGTAACAAATAAGCAATACAAAATTCCATTCTATGC  845

seq1  CGTCATTTAACAAATCTTAATTAAGCTTTTAGCAAGTCTTCATTCTCACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCATTTAACAAATCTTAATTAAGCTTTTAGCAAGTCTTCATTCTCACA  895

seq1  TCTGTAGTATAACTACAAAATTCAGCAAAAACTAGCCAGGAACAAGACTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGTATAACTACAAAATTCAGCAAAAACTAGCCAGGAACAAGACTG  945

seq1  AGTTGTCTCATATACATAATGCAAGAAAACTTTACAACTCAGTGGTAATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCTCATATACATAATGCAAGAAAACTTTACAACTCAGTGGTAATT  995

seq1  TTCAATATTAGAAAGTGTAAGATAATTTCTAAGATGTTAAAAGTTTCCCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATTAGAAAGTGTAAGATAATTTCTAAGATGTTAAAAGTTTCCCA  1045

seq1  AAAATTTACTAAGCTTTCAATAAATGAACATACAAGAACAAGAAAAGGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTACTAAGCTTTCAATAAATGAACATACAAGAACAAGAAAAGGAA  1095

seq1  CCAATGAAAAAACTTGCATTTGCAACTATAATATAATTTAAGTGGCACAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGAAAAAACTTGCATTTGCAACTATAATATAATTTAAGTGGCACAT  1145

seq1  AGAATTC  1153
      |||||||
seq2  AGAATTC  1152

seq1: chr14_89225994_89227144
seq2: B6Ng01-073G14.g_70_1221

seq1  GAATTCTTTTCTGGTGCTTCAATATATAAACCACTCACATTGTCTATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTGGTGCTTCAATATATAAACCACTCACATTGTCTATATA  50

seq1  TTGACTAAAATTTTGGCTGTAGCTTAAATTTAATTTTTTCAATTATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTAAAATTTTGGCTGTAGCTTAAATTTAATTTTTTCAATTATTAAA  100

seq1  TGGGCACAAATTTTGGATATACTCATTACTGAAAAACATCAATAGACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACAAATTTTGGATATACTCATTACTGAAAAACATCAATAGACCTA  150

seq1  GCATCAGCAAGTTAAGGCATAATTTTACAAAACAGTTTAGCTAAGTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGCAAGTTAAGGCATAATTTTACAAAACAGTTTAGCTAAGTGAGA  200

seq1  TAATATTTAGAAATATTTGATCATTTACAAAGTTATCTATATGCAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTAGAAATATTTGATCATTTACAAAGTTATCTATATGCAATATT  250

seq1  TGCTTCTCATTATGAAATATTTTTTAATATTTAAATTATCTACATTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTCATTATGAAATATTTTTTAATATTTAAATTATCTACATTCTAT  300

seq1  AAAATATGTATGCTAAATACATGTTCAGCATAAAATGTGAACTATAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTATGCTAAATACATGTTCAGCATAAAATGTGAACTATAAAAA  350

seq1  TTTTCATAATCATCATTTACCTGATTTACCTGAATTATTTGAATGCTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATAATCATCATTTACCTGATTTACCTGAATTATTTGAATGCTAAT  400

seq1  GAAGATCTGTTATTGAGTGGCTTTTGTATGGTACATAATTTCTTCTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCTGTTATTGAGTGGCTTTTGTATGGTACATAATTTCTTCTTTTT  450

seq1  ACTTTTGTGATTAAACATTCACTCTATTTTAGATATGCCTGTTCACTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTGATTAAACATTCACTCTATTTTAGATATGCCTGTTCACTACT  500

seq1  TAATGACTATAAGAGTCAATAGTGAAGGTTTCCACATCTGGAAAGATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACTATAAGAGTCAATAGTGAAGGTTTCCACATCTGGAAAGATATG  550

seq1  GTTGCTAGAAAATTAATGTATTCCATCACCAGCATTCAAGTTAATGCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTAGAAAATTAATGTATTCCATCACCAGCATTCAAGTTAATGCAAT  600

seq1  ATCCAATGAATGAGAAATTGAGTGACTATCAATCAAATTGTTGATGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATGAATGAGAAATTGAGTGACTATCAATCAAATTGTTGATGATTT  650

seq1  ATTTCTAC-TTTTATATTTTTTAAACTGAATATATATTTAGACTGTACAT  699
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTACTTTTTATATTTTTTAAACTGAATATATATTTAGACTGTACAT  700

seq1  AATC-TTAGAGCTCTCAATGGATGACTGCTAAC-TTTTTTTTCCA-TTTT  746
      |||| |||||||||||||||||||||||||||| ||||||||||| ||||
seq2  AATCTTTAGAGCTCTCAATGGATGACTGCTAACTTTTTTTTTCCATTTTT  750

seq1  TTATTAGGTATTTAGCTCATTTACATTTCCAAAGCTATACC-AAAAGTCC  795
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTATTAGGTATTTAGCTCATTTACATTTCCAAAGCTATACCAAAAAGTCC  800

seq1  CCCATACCCACCCACTCCCACTCCCCTACCCACCCACTCCCCCTTTTTGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACCCACCCACTCCCACTCCCCTACCCACCCACTCCCCCTTTTTGG  850

seq1  CCCTGGCGTTCCCC-TGTACTGGGGCATATAAAGTTTGCGTGTCCAATGG  894
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCCTGGCGTTCCCCTTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGG  900

seq1  GCCTCTCTTTCCAGTGATGGACGACTAGGCCATCTTTTGATACATATGAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTTTCCAGTGATGGACGACTAGGCCATCTTTTGATACATATGAC  950

seq1  TGCTAACTTTTATATTCAACACATCAAATAGTGTGTGTCTTCTCCGTCCT  994
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  TGCTAACTTTTATA-TCAACACTTCAAATAGTGTGTGTCTTCTCCGTCCT  999

seq1  ATGCCTATAGCAATATTTCTCTTGTTTTATATTATGGTATATTCTCAAAT  1044
      ||||||||||| ||||||||||||||||||| ||||| |||||||| |||
seq2  ATGCCTATAGC-ATATTTCTCTTGTTTTATA-TATGGGATATTCTC-AAT  1046

seq1  GACTTATGCATAATATGCATAAATGTTTATCTTTTTGAAATAAAAATGTG  1094
      |||||||||||||||||||| |||||||||||||||| ||| ||||||||
seq2  GACTTATGCATAATATGCAT-AATGTTTATCTTTTTGGAAT-AAAATGTG  1094

seq1  AAAGA-AAAGTTTGTTATAAACATTATTTTACAAAAAGTTAGACAGC-TG  1142
       |||| |||||||||||||||| |||||||||  |||| |||||||| ||
seq2  GAAGAGAAAGTTTGTTATAAACTTTATTTTAC--AAAGGTAGACAGCTTG  1142

seq1  GCA-TTTATT  1151
      ||| ||||||
seq2  GCACTTTATT  1152