BAC Information

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BAC

Clone NameB6Ng01-073M11
Chromosome14 (Build37)
Map Location 57,623,839 - 57,787,079
singlet/doubletdoublet
Overlap geneB020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6
Upstream geneEG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817
Downstream geneLOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4, Lats2, Sap18, F630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160, Fgf9, LOC100043554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073M11.bB6Ng01-073M11.g
ACCDH890806DH890807
length1,0101,027
definitionDH890806|Mus musculus domesticus DNA, BAC clone: B6Ng01-073M11, 5' end.DH890807|Mus musculus domesticus DNA, BAC clone: B6Ng01-073M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,623,839 - 57,624,845)(57,786,046 - 57,787,079)
sequence
gaattcttgtcactttagtagggaacataagtgtagaggggaggggatgt
ggtacttcatggtgaggttcattttgtgggtacctgatgcctgttgtcta
ccctccatttccataagattcctgaccctgaggctaaactctctctactt
cccagacagcagctcagcagctctttcattctctggccctcttgatggag
gattcctgatcagtgatccatagactcccattcttgagaacactgggaca
atgggtttaaaattgaattctacgtgcttggtagatggcaatatcaattg
agagaatatgaaaacttatctaaatatttaggtttcagatactaaagaga
atgtctgtcaagggacattgccaccaacctcattttgtattacatataca
ggtggaagagggattcttatgttaggtcaaatcatggcctggtgattcac
atgtacatcaatctatctatctatctatctatctacaaaccatttatatt
gcatttcacattccgcctggatagttacttcactctaggtctaattaaga
tcaataaagtgtttattttttaaatgaatcaagatctagggagatataac
tgtcagtcaggttaacgctgtgattaccttcaacttgactccatgtagaa
ttaactaaagtctcaaatgtctaggcacccttctgaggagtttagcttaa
gtactttggagctggaatttctacttctgacctagtttctctgaggtgca
aaatacagctttttccttaatctttctttggtgggaaagccaggctccct
tctgagacatacatatattgctataggtctacaagaaaggccagaaaaga
aggaagttctccattgcctgcatgggatcaccctccataggaagtgcatg
cactaactgaggtagagcagaggttctctgtctttagggtgaaatgtgtt
ttaattgatgaaattccaaaggatccccgatggtcattccctgatctaaa
atactcaaaa
gaattcactgaggagcccaacccagcttccaaggattcagcacggggtgc
ttctgacttccacttctgctgacacacaaggtcttcagagtgagtcccac
ccctctgacacctttgagctcctagacatcttagagaccatctatacaat
ccataaatgaagaatctcaaataaaaccgattggatactattaaaaccat
ttacaactgggcccccatcctccagttatggccaccaataaatatcactc
tgtgttacaccacttggttcagcttagttttctcctcagttttatactct
gaggaaaaaaaagatcatttttcactttattgtttttaaattgaaataga
atcattgcaacttataggtatggtagattgaggaggaatggcttccatag
actcatgtctttgaatgtttggcccatagggagagagaggccttattgga
gcagttgtggccttgctagaggaagtgtgtcactaggggccagcttggag
gtctcaagggctcaagcctactgcctcttactgactgactgcctcttact
gctgcctgcagagctctcagctccttctccagcgctgtgtctgcctgcac
actgccttgtttcccaccatgacgggcaatggagaattctgaactataag
ccagccccaatgaaatgttttcttatataagagttgctgtggtcatggtg
tctcttcacaacagcaaaaccctaagacaatgtggttccatgtgacattt
ctgcatctgtatgcaatgcatagttaaataccagatcagggcaccagcag
cttcgtatcctcagacattttatcattccttttgtgctgtaaacgtttag
aatcgtctctactagctatgttttacaaatatctgtcttttggatatttg
cttgttgtttaagacggattcactctgaagccctggcaggctgatcttat
agagacaggctggcctttggccttgacctcaaagacttcttcttatcttg
gctgagtactgggattaaagacaagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_57623839_57624845
seq2: B6Ng01-073M11.b_42_1050

seq1  GAATTCTTGTCACTTTAGTAGGGAACATAAGTGTAGAGGGGAGGGGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCACTTTAGTAGGGAACATAAGTGTAGAGGGGAGGGGATGT  50

seq1  GGTACTTCATGGTGAGGTTCATTTTGTGGGTACCTGATGCCTGTTGTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTTCATGGTGAGGTTCATTTTGTGGGTACCTGATGCCTGTTGTCTA  100

seq1  CCCTCCATTTCCATAAGATTCCTGACCCTGAGGCTAAACTCTCTCTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCATTTCCATAAGATTCCTGACCCTGAGGCTAAACTCTCTCTACTT  150

seq1  CCCAGACAGCAGCTCAGCAGCTCTTTCATTCTCTGGCCCTCTTGATGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACAGCAGCTCAGCAGCTCTTTCATTCTCTGGCCCTCTTGATGGAG  200

seq1  GATTCCTGATCAGTGATCCATAGACTCCCATTCTTGAGAACACTGGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTGATCAGTGATCCATAGACTCCCATTCTTGAGAACACTGGGACA  250

seq1  ATGGGTTTAAAATTGAATTCTACGTGCTTGGTAGATGGCAATATCAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTTAAAATTGAATTCTACGTGCTTGGTAGATGGCAATATCAATTG  300

seq1  AGAGAATATGAAAACTTATCTAAATATTTAGGTTTCAGATACTAAAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATATGAAAACTTATCTAAATATTTAGGTTTCAGATACTAAAGAGA  350

seq1  ATGTCTGTCAAGGGACATTGCCACCAACCTCATTTTGTATTACATATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTCAAGGGACATTGCCACCAACCTCATTTTGTATTACATATACA  400

seq1  GGTGGAAGAGGGATTCTTATGTTAGGTCAAATCATGGCCTGGTGATTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAGAGGGATTCTTATGTTAGGTCAAATCATGGCCTGGTGATTCAC  450

seq1  ATGTACATCAATCTATCTATCTATCTATCTATCTACAAACCATTTATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATCAATCTATCTATCTATCTATCTATCTACAAACCATTTATATT  500

seq1  GCATTTCACATTCCGCCTGGATAGTTACTTCACTCTAGGTCTAATTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCACATTCCGCCTGGATAGTTACTTCACTCTAGGTCTAATTAAGA  550

seq1  TCAATAAAGTGTTTATTTTTTAAATGAATCAAGATCTAGGGAGATATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAAGTGTTTATTTTTTAAATGAATCAAGATCTAGGGAGATATAAC  600

seq1  TGTCAGTCAGGTTAACGCTGTGATTACCTTCAACTTGACTCCATGTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTCAGGTTAACGCTGTGATTACCTTCAACTTGACTCCATGTAGAA  650

seq1  TTAACTAAAGTCTCAAATGTCTAGGCACCCTTCTGAGGAGTTTAGCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAAAGTCTCAAATGTCTAGGCACCCTTCTGAGGAGTTTAGCTTAA  700

seq1  GTAC-TTGGAGCTGGAAGTTCTACTTCTGACCTAG-TTCTCTGAGGTGCA  748
      |||| |||||||||||| ||||||||||||||||| ||||||||||||||
seq2  GTACTTTGGAGCTGGAATTTCTACTTCTGACCTAGTTTCTCTGAGGTGCA  750

seq1  AAATACAGCTTTT--CCTAATCTTTC-TTGGTGGGAAAGCCAGGCTCCCT  795
      |||||||||||||  | ||||||||| |||||||||||||||||||||||
seq2  AAATACAGCTTTTTCCTTAATCTTTCTTTGGTGGGAAAGCCAGGCTCCCT  800

seq1  TCTGAGACATACATATA-TGCTATAGGTCTACAAG-AAGGCCAGAAAAGA  843
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  TCTGAGACATACATATATTGCTATAGGTCTACAAGAAAGGCCAGAAAAGA  850

seq1  AGGAAGTTCTCCATTGCCTGCATGGTATCACCCTCCATAGGAAGTGCATG  893
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGAAGTTCTCCATTGCCTGCATGGGATCACCCTCCATAGGAAGTGCATG  900

seq1  CACTAACTGAGGTTAGAGCAGAGGTTCTCTGTCTTTAGGGGGAGATGTGT  943
      |||||||||||| ||||||||||||||||||||||||||| || ||||||
seq2  CACTAACTGAGG-TAGAGCAGAGGTTCTCTGTCTTTAGGGTGAAATGTGT  949

seq1  TTTGAGTTGATGAAATTCCCAAAGGAGTCCCCGAAGGTCAGTCCCTGAGC  993
      ||| | ||||||||||| |||||||| ||||||| ||||| ||||||| |
seq2  TTT-AATTGATGAAATT-CCAAAGGA-TCCCCGATGGTCATTCCCTGATC  996

seq1  CAAGAATACTCAAA  1007
       || ||||||||||
seq2  TAA-AATACTCAAA  1009

seq1: chr14_57786046_57787079
seq2: B6Ng01-073M11.g_71_1097 (reverse)

seq1  TGCTTGTCTTTAATCCCAGTACTCAGACAAAGATAAGAAGAGCTCTGTGA  50
      |||||||||||||||||||||||||| | ||||||||||||  ||| |||
seq2  TGCTTGTCTTTAATCCCAGTACTCAG-CCAAGATAAGAAGAAGTCTTTGA  49

seq1  GGTCAAGGCCAAAGGCCAGCCTGGTCTCTATAAAGATCAGGCCTGCCAGG  100
      |||||||||||||||||||||| |||||||| ||||||| ||||||||||
seq2  GGTCAAGGCCAAAGGCCAGCCT-GTCTCTAT-AAGATCA-GCCTGCCAGG  96

seq1  GCTTCAGAGTGAAATCCTGTCTTAAAACAAACAAGCAAATATCCAAAAGA  150
      ||||||||||| ||||| ||||||||   |||||||||||||||||||||
seq2  GCTTCAGAGTG-AATCC-GTCTTAAA--CAACAAGCAAATATCCAAAAGA  142

seq1  CAGATATTTGTAAAACATAGCTAGTAGAGACGATTCTAAACGTTTACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTTGTAAAACATAGCTAGTAGAGACGATTCTAAACGTTTACAGC  192

seq1  AC-AAAGGAATGAT-AAATGTCTGAGGATACGAAGCTGCTGGTTGCCCTG  248
      || ||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  ACAAAAGGAATGATAAAATGTCTGAGGATACGAAGCTGCTGG-TGCCCTG  241

seq1  ATCTGGTATTTAACTATGCATTGCATACAGATGCAGAAATGTCACATGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTATTTAACTATGCATTGCATACAGATGCAGAAATGTCACATGGA  291

seq1  ACCACATTGTCTTAGGGTTTTGCTGTTGTGAAGAGACACCATGACCACAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATTGTCTTAGGGTTTTGCTGTTGTGAAGAGACACCATGACCACAG  341

seq1  CAACTCTTATATAAGAAAACATTTCATTGGGGCTGGCTTATAGTTCAGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTTATATAAGAAAACATTTCATTGGGGCTGGCTTATAGTTCAGAA  391

seq1  TTCTCCATTGCCCGTCATGGTGGGAAACAAGGCAGTGTGCAGGCAGACAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATTGCCCGTCATGGTGGGAAACAAGGCAGTGTGCAGGCAGACAC  441

seq1  AGCGCTGGAGAAGGAGCTGAGAGCTCTGCAGGCAGCAGTAAGAGGCAGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTGGAGAAGGAGCTGAGAGCTCTGCAGGCAGCAGTAAGAGGCAGTC  491

seq1  AGTCAGTAAGAGGCAGTAGGCTTGAGCCCTTGAGACCTCCAAGCTGGCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTAAGAGGCAGTAGGCTTGAGCCCTTGAGACCTCCAAGCTGGCCC  541

seq1  CTAGTGACACACTTCCTCTAGCAAGGCCACAACTGCTCCAATAAGGCCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGACACACTTCCTCTAGCAAGGCCACAACTGCTCCAATAAGGCCTC  591

seq1  TCTCTCCCTATGGGCCAAACATTCAAAGACATGAGTCTATGGAAGCCATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCTATGGGCCAAACATTCAAAGACATGAGTCTATGGAAGCCATT  641

seq1  CCTCCTCAATCTACCATACCTATAAGTTGCAATGATTCTATTTCAATTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCAATCTACCATACCTATAAGTTGCAATGATTCTATTTCAATTTA  691

seq1  AAAACAATAAAGTGAAAAATGATCTTTTTTTTCCTCAGAGTATAAAACTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATAAAGTGAAAAATGATCTTTTTTTTCCTCAGAGTATAAAACTG  741

seq1  AGGAGAAAACTAAGCTGAACCAAGTGGTGTAACACAGAGTGATATTTATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAAACTAAGCTGAACCAAGTGGTGTAACACAGAGTGATATTTATT  791

seq1  GGTGGCCATAACTGGAGGATGGGGGCCCAGTTGTAAATGGTTTTAATAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCATAACTGGAGGATGGGGGCCCAGTTGTAAATGGTTTTAATAGT  841

seq1  ATCCAATCGGTTTTATTTGAGATTCTTCATTTATGGATTGTATAGATGGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATCGGTTTTATTTGAGATTCTTCATTTATGGATTGTATAGATGGT  891

seq1  CTCTAAGATGTCTAGGAGCTCAAAGGTGTCAGAGGGGTGGGACTCACTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGATGTCTAGGAGCTCAAAGGTGTCAGAGGGGTGGGACTCACTCT  941

seq1  GAAGACCTTGTGTGTCAGCAGAAGTGGAAGTCAGAAGCACCCCGTGCTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCTTGTGTGTCAGCAGAAGTGGAAGTCAGAAGCACCCCGTGCTGA  991

seq1  ATCCTTGGAAGCTGGGTTGGGCTCCTCAGTGAATTC  1034
      ||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGGAAGCTGGGTTGGGCTCCTCAGTGAATTC  1027