BAC Information

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BAC

Clone NameB6Ng01-074F13
Chromosome14 (Build37)
Map Location 18,303,897 - 18,499,955
singlet/doubletdoublet
Overlap genenone
Upstream geneRarb, Tpi-rs9
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074F13.bB6Ng01-074F13.g
ACCDH891221DH891222
length1,1221,116
definitionDH891221|Mus musculus domesticus DNA, BAC clone: B6Ng01-074F13, 5' end.DH891222|Mus musculus domesticus DNA, BAC clone: B6Ng01-074F13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,498,813 - 18,499,955)(18,303,897 - 18,305,015)
sequence
gaattccaggacagccagggcttcacagagaaatcctgccttggaaaaac
aaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaac
aaaacaaaacacagcaaagcaaagcaaagcaaagcaaagcaaaacaaaac
aaaacaaaacaaaagcaataccaagaactcaggtccacacactctctgga
ggaacactggctattcgttgcttcctaaatatgtatgcatgtaatgcgca
gtcactcaacgaacatgaagatagtgcaggtttaattatctaccctcttc
actcctggacatctgtaacacacaccagtgtaaaatcagactctgggaca
cttatattaagttgctatgttcaggatttctctgccataagtgacaaaga
acaaacaggctaatagtaaaagacaggctctaccaccatgtccaggagtc
agagaaagggctgaaagggagagcaggatctatgggctatgatgtgggca
tgggtaacatttcatacaatgacatgagcagtgcctttgcctctgtgtgt
aagaacatggcatatcctggacacagagacggactctgtgaccttgggca
tgtaggttggtaagacattggtgcatacagcagagaaatgtgagaaaaag
atgaacaaggctggaaatagcatagttgttagcatcaagcattctttgct
gggtccacattgctgaaccttgggaaaccagtcctgagaaaacactaaga
tggtggagggcagtctctgatctattctgcctgcacaggagcaacagatg
tcaaaaggtcaggatattccgtggattcctcaatgcctgccactaaaccc
ctcaacaaagaagaccagcagcacctccacttgcccacctgtactccagc
tttgacttagctgacttactactcaagctccatagttccttaaattctgc
accatgaagagagcaacgatttccttagccctctttgggctctagagact
tgacgaatacagtttagcagatcctctctaatgtggatgtgccccaccat
gagtggcatatcatagtaaacacaatcactatgtgcatgggtgagtggag
acattgtttgtacacatttgca
gaattcagttccctcttcagggacaccttttcagggtttttacattgtgc
actttcagttgggagccgtttatatctttaagatctttatgtggagaaat
ttttgtcacagttggtcaagtttatatcatgatttcaaagcttacacaca
tacaaataaggatatattaatagtttccaggatgatttttaaaaattaat
tgctttattctaaggtggtaaaattaagtgcttatataaacttgaaagta
agaataagattaaaaaaataaaacctttatcattaagggtttatggtacc
aatacatagtctctgccacttaagaggctgaaacagggaaacccaaagct
cagtttggaggcatagagttcaagttcagtgttgaccactgagtgaaacc
ctattgcaaaatcaaatgctgaaagagtggggctaatacatgcttgaagc
ccacagttaattaaaagtaagagctcagtattggtctaacaatgtagcaa
cagcacaagaaactggggcttttatggagctctgctccttagtggctggg
tttgtccttttactggttgctggttacttctctgtcatttttgggcattc
acttgttaagaagcaaaataaaatgaataaatactttatgccattaagct
ctgtgcaacaatcaacttcatttaccattcatggttaaaaataaacatta
tagaaacacaattataataattatattccagtaactgttttagtgaaaat
ttcattagtataaaatttactgttcaaatttatcaagttaaaatgtttca
aattctaggaggacttttttccctaattcaaaatagaagaatttgataga
aaaagcaagattggaaatcagaaaatcttaaggcactaagaaacaatata
atgattgtatattaccaaattcatgaaaaatgctgatagctaggaaatat
tctagcaataatagcttatttaagaatttgtgtttaaagctaagaaccta
taagcttaatcattaatggagacgcatggtgtttatctaacttcaaattc
aactataatggagtattcagagaaaaacctgaacaagaaatcaatcttga
aaatgaaatatttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_18498813_18499955
seq2: B6Ng01-074F13.b_44_1165 (reverse)

seq1  TGCAAATGTGTACCAAACATGTTCTCCACTCAACACATGCACATATGTGT  50
      |||||||||||| ||||||   ||||||||| || ||||||||||   ||
seq2  TGCAAATGTGTA-CAAACAATGTCTCCACTC-ACCCATGCACATA---GT  45

seq1  ATTTGTGTATTACTAATGGAATATTGCCACCTCATGGTGGGGCACATCCA  100
        |||||| ||||| |||  ||| ||||| ||||||||||||||||||| 
seq2  GATTGTGT-TTACT-ATG--ATA-TGCCA-CTCATGGTGGGGCACATCC-  88

seq1  ACATTTAGAGAGGATCTGCTAAACTGTTATTCGTTCAAGTCTCTAGAGCC  150
      ||| |||||||||||||||||||||| |||||| ||||||||||||||||
seq2  ACA-TTAGAGAGGATCTGCTAAACTG-TATTCG-TCAAGTCTCTAGAGCC  135

seq1  CAAAGAGGGCTTAAGGAAATCGTTGCTCTCTTTCATGGTGCAGAATTTAA  200
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  CAAAGAGGGC-TAAGGAAATCGTTGCTCTC-TTCATGGTGCAGAATTTAA  183

seq1  GGAACTATTGGAGCCTTGAGTAGTAAGTCAGCCTAAGTCAAAGCTGGAGT  250
      ||||||| ||||| ||||||||||||||||| ||||||||||||||||||
seq2  GGAACTA-TGGAG-CTTGAGTAGTAAGTCAG-CTAAGTCAAAGCTGGAGT  230

seq1  ACAGGTGGGCAAGTGGAGGTGCCTGCTGGTCTTCTTTGTTGAGGGGTTTA  300
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACAGGTGGGCAAGTGGAGGTG-CTGCTGGTCTTCTTTGTTGAGGGGTTTA  279

seq1  GTGGCAGGCATTGAGGAATCCACGGAATATCCTGACCTTTTGACATCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGCATTGAGGAATCCACGGAATATCCTGACCTTTTGACATCTGT  329

seq1  TGCTCCTGTGCAGGCAGAATAGATCAGAGACTGCCCTCCACCATCTTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGTGCAGGCAGAATAGATCAGAGACTGCCCTCCACCATCTTAGT  379

seq1  GTTTTCTCAGGACTGGTTTCCCAAGGTTCAGCAATGTGGACCCAGCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCAGGACTGGTTTCCCAAGGTTCAGCAATGTGGACCCAGCAAAG  429

seq1  AATGCTTGATGCTAACAACTATGCTATTTCCAGCCTTGTTCATCTTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGATGCTAACAACTATGCTATTTCCAGCCTTGTTCATCTTTTTC  479

seq1  TCACATTTCTCTGCTGTATGCACCAATGTCTTACCAACCTACATGCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTCTCTGCTGTATGCACCAATGTCTTACCAACCTACATGCCCAA  529

seq1  GGTCACAGAGTCCGTCTCTGTGTCCAGGATATGCCATGTTCTTACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAGAGTCCGTCTCTGTGTCCAGGATATGCCATGTTCTTACACACA  579

seq1  GAGGCAAAGGCACTGCTCATGTCATTGTATGAAATGTTACCCATGCCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAAGGCACTGCTCATGTCATTGTATGAAATGTTACCCATGCCCAC  629

seq1  ATCATAGCCCATAGATCCTGCTCTCCCTTTCAGCCCTTTCTCTGACTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGCCCATAGATCCTGCTCTCCCTTTCAGCCCTTTCTCTGACTCCT  679

seq1  GGACATGGTGGTAGAGCCTGTCTTTTACTATTAGCCTGTTTGTTCTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGGTGGTAGAGCCTGTCTTTTACTATTAGCCTGTTTGTTCTTTGT  729

seq1  CACTTATGGCAGAGAAATCCTGAACATAGCAACTTAATATAAGTGTCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATGGCAGAGAAATCCTGAACATAGCAACTTAATATAAGTGTCCCA  779

seq1  GAGTCTGATTTTACACTGGTGTGTGTTACAGATGTCCAGGAGTGAAGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGATTTTACACTGGTGTGTGTTACAGATGTCCAGGAGTGAAGAGG  829

seq1  GTAGATAATTAAACCTGCACTATCTTCATGTTCGTTGAGTGACTGCGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATAATTAAACCTGCACTATCTTCATGTTCGTTGAGTGACTGCGCAT  879

seq1  TACATGCATACATATTTAGGAAGCAACGAATAGCCAGTGTTCCTCCAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCATACATATTTAGGAAGCAACGAATAGCCAGTGTTCCTCCAGAG  929

seq1  AGTGTGTGGACCTGAGTTCTTGGTATTGCTTTTGTTTTGTTTTGTTTTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGGACCTGAGTTCTTGGTATTGCTTTTGTTTTGTTTTGTTTTGT  979

seq1  TTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTGTGTTTTGTTTTGTTTTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTGTGTTTTGTTTTGTTTTGT  1029

seq1  TTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTC  1079

seq1  CAAGGCAGGATTTCTCTGTGAAGCCCTGGCTGTCCTGGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAGGATTTCTCTGTGAAGCCCTGGCTGTCCTGGAATTC  1122

seq1: chr14_18303897_18305015
seq2: B6Ng01-074F13.g_68_1183

seq1  GAATTCAGTTCCCTCTTCAGGGACACCTTTTCAGGGTTTTTACATTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCCTCTTCAGGGACACCTTTTCAGGGTTTTTACATTGTGC  50

seq1  ACTTTCAGTTGGGAGCCGTTTATATCTTTAAGATCTTTATGTGGAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGTTGGGAGCCGTTTATATCTTTAAGATCTTTATGTGGAGAAAT  100

seq1  TTTTGTCACAGTTGGTCAAGTTTATATCATGATTTCAAAGCTTACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCACAGTTGGTCAAGTTTATATCATGATTTCAAAGCTTACACACA  150

seq1  TACAAATAAGGATATATTAATAGTTTCCAGGATGATTTTTAAAAATTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATAAGGATATATTAATAGTTTCCAGGATGATTTTTAAAAATTAAT  200

seq1  TGCTTTATTCTAAGGTGGTAAAATTAAGTGCTTATATAAACTTGAAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATTCTAAGGTGGTAAAATTAAGTGCTTATATAAACTTGAAAGTA  250

seq1  AGAATAAGATTAAAAAAATAAAACCTTTATCATTAAGGGTTTATGGTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGATTAAAAAAATAAAACCTTTATCATTAAGGGTTTATGGTACC  300

seq1  AATACATAGTCTCTGCCACTTAAGAGGCTGAAACAGGGAAACCCAAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAGTCTCTGCCACTTAAGAGGCTGAAACAGGGAAACCCAAAGCT  350

seq1  CAGTTTGGAGGCATAGAGTTCAAGTTCAGTGTTGACCACTGAGTGAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGGAGGCATAGAGTTCAAGTTCAGTGTTGACCACTGAGTGAAACC  400

seq1  CTATTGCAAAATCAAATGCTGAAAGAGTGGGGCTAATACATGCTTGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCAAAATCAAATGCTGAAAGAGTGGGGCTAATACATGCTTGAAGC  450

seq1  CCACAGTTAATTAAAAGTAAGAGCTCAGTATTGGTCTAACAATGTAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTAATTAAAAGTAAGAGCTCAGTATTGGTCTAACAATGTAGCAA  500

seq1  CAGCACAAGAAACTGGGGCTTTTATGGAGCTCTGCTCCTTAGTGGCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAAGAAACTGGGGCTTTTATGGAGCTCTGCTCCTTAGTGGCTGGG  550

seq1  TTTGTCCTTTTACTGGTTGCTGGTTACTTCTCTGTCATTTTTGGGCATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTTTTACTGGTTGCTGGTTACTTCTCTGTCATTTTTGGGCATTC  600

seq1  ACTTGTTAAGAAGCAAAATAAAATGAATAAATACTTTATGCCATTAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTAAGAAGCAAAATAAAATGAATAAATACTTTATGCCATTAAGCT  650

seq1  CTGTGCAACAATCAACTTCATTTACCATTCATGGTTAAAAATAAACATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAACAATCAACTTCATTTACCATTCATGGTTAAAAATAAACATTA  700

seq1  TAGAAACACAATTATAATAATTATATTCCAGTAACTGTTTTAGTGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACACAATTATAATAATTATATTCCAGTAACTGTTTTAGTGAAAAT  750

seq1  TTCATTAGTATAAAATTTACTGTTCAAATTTATCAAGTTAAAATGTTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAGTATAAAATTTACTGTTCAAATTTATCAAGTTAAAATGTTTCA  800

seq1  AATTCTAGGAGGACTTTTTTCCCTAATTCAAAATAGAAGAATTTGATAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGGAGGACTTTTTTCCCTAATTCAAAATAGAAGAATTTGATAGA  850

seq1  AAAAGCAAGATTGGAAATCAGAAAATCTTAAGGCACTAAGAAACAATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAGATTGGAAATCAGAAAATCTTAAGGCACTAAGAAACAATATA  900

seq1  ATGATTGTATATTTACCAAATTCATGAAAAATGCTGATAGCTAGGAAAAT  950
      ||||||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  ATGATTGTATA-TTACCAAATTCATGAAAAATGCTGATAGCTAGG-AAAT  948

seq1  ATTCTAGCAATAATAGCTTATTTAAGGAATTTGTGTTTAAAGCTAAGAAC  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTCTAGCAATAATAGCTTATTTAA-GAATTTGTGTTTAAAGCTAAGAAC  997

seq1  CTAT-AGCTTAATCATTAATGGAGAACCGCATGGTTGTTTATCTAAC-TC  1048
      |||| ||||||||||||||||||||  ||||||| |||||||||||| ||
seq2  CTATAAGCTTAATCATTAATGGAGA--CGCATGG-TGTTTATCTAACTTC  1044

seq1  AATTTCAACTATAATGGAGGTATTTCAGAGAAAA--CTGAACAAGAAATC  1096
      || ||||||||||||||| ||| |||||||||||  ||||||||||||||
seq2  AAATTCAACTATAATGGA-GTA-TTCAGAGAAAAACCTGAACAAGAAATC  1092

seq1  AATCCTTGAGATG-AATATTTTTC  1119
      |||| |  | ||| ||||||||||
seq2  AATCTTGAAAATGAAATATTTTTC  1116