BAC Information

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BAC

Clone NameB6Ng01-074P05
Chromosome14 (Build37)
Map Location 119,178,116 - 119,307,088
singlet/doubletdoublet
Overlap geneCldn10, Dzip1
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4
Downstream geneDnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601, EG621324, LOC100043830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074P05.bB6Ng01-074P05.g
ACCDH891658DH891659
length1,1601,062
definitionDH891658|Mus musculus domesticus DNA, BAC clone: B6Ng01-074P05, 5' end.DH891659|Mus musculus domesticus DNA, BAC clone: B6Ng01-074P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,178,116 - 119,179,194)(119,306,025 - 119,307,088)
sequence
gaattcagtaagaatgttgcctattcagtgacattcagaattgcctctaa
taaaagctaagtcactgccctacacagaaatttaccatcatctaggaaga
aggaagtttcagacctacggagaaaccagaatagatacttagaactatag
atagctgagttacacccatacacacgtatttacaatggcctaagggaaag
gtagactatacaatagactaaaataagaactatggcaagggcacgaagcc
cttgaccctggcttctaagattaagtgaatcttaggtggagcccttgttg
atcccagttgttaacaatgaattctatcccaggtggttcctgttagacct
tctgtgtttgcattcctctgttttatgtaagaatccagtaacctctttct
accttgcgggtatgtcacccaacttccttattgtcttctgtataaaaagt
ttgatgctcaatttgacaaattacattcagattctacacaacctctcctg
tgtgcatctgtctgtcaattcatccgatgctttgcccacctgcgactaga
gacccgttccacgcagacaaaggggcccaaagtgtctgcggcatacagca
tatgtaagaggatggcttggaagggatgagaggggctcatctcaggaagc
tgaagtgtggcaggctctggtgagggtagaggacagggcacagggagcat
aagaagtaatagactgggaggagacagatgacagatgatagtctcatagg
tgacatacaggagataaataatagatagatggtagagatagatagaaaga
cagacagacagacagtaaagtaaacacaagagattcagtcaaggaaaaga
ttggtgctgtggtttcagactccattaatgacagacacaagaccatgcat
gtgccggctgtagtacaaatgttattaataccatagatcatcgttcccac
acagaaaacagaaattatgtttctttacctgcatacatcatcccagacac
actagttccattaacaagtttccataagagccatcgccttccttgaaact
tcatttaaaaccttatatctttacagcaaagtcctttcttgctaaagcag
cattaaacatttcctaaaaacaacaaagtggctgatttcgattagggaat
ctgatagcaa
gaattctcccgtggtcatgtgcacccctggcctctacagtgcagggtgtc
tttttaatcctcttccaagctgccagtggttgctcagccacgtgactgcc
gtgagtaggagattagaagctgacatttaccttccacagaccacagtgtc
tcccgtgcaccgagttgcctgttttgaacccaggcacccagcaaccctag
ttctttgaccccttagcgtctcacactagcatctgctgttttcaaataat
gtcttactggcacacagccatactcactccctgaaatcctgcccgtggct
cttctcccctgtgctggctagtttccagtcaacttgacacaagggtgacg
ctggagaggagggagcctcacttgagaaaacaaggtccagaggctgacaa
accctatagaccgatttctgaaccagtgattgatacggaagggcttaagc
catgtgagtgcggccatccctgggccggtggctgagcagaccgtgtggag
caaggcagtaagcagtgccctccatggcctctgcgtcctcccctgcttga
gttcctgtcctgacttcctgtacctgtgtcccttcccaccccagcttgcc
ttggtcatggtgtttgagcccagcaattgtagcctgaattaggacacctc
catacccagagtgtgacagactcccccgcccccactttgtaacctaaaat
actatctgtgtcgtacaaacatctacaaatcccagccccacagtacagcc
agagacatgggtgtgagcattacggccacatacactctaaaaatgccagc
agggattttactagcttgtcgggcttcataggcacccggtaaagagcagg
ctccagtgtggaatgggtttctgtgttacaggtatatcatttgttttact
ctcctgcaggcagcaagtggacagatcgatttcaagttctcaacgaagac
acagcaaggaaaaggggcaggtaagacagttagccacccaccctgccact
ttgtcctcgtgtggagaggtgcaacccagggacgctcagcacacccatgc
actcccatagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_119178116_119179194
seq2: B6Ng01-074P05.b_139_1204

seq1  GGAAGAAGGAAGTTTCAGACCTACGGAGAAACCAGAATAGATACTTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGGAAGTTTCAGACCTACGGAGAAACCAGAATAGATACTTAGAA  50

seq1  CTATAGATAGCTGAGTTACACCCATACACACGTATTTACAATGGCCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGATAGCTGAGTTACACCCATACACACGTATTTACAATGGCCTAAG  100

seq1  GGAAAGGTAGACTATACAATAGACTAAAATAAGAACTATGGCAAGGGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGTAGACTATACAATAGACTAAAATAAGAACTATGGCAAGGGCAC  150

seq1  GAAGCCCTTGACCCTGGCTTCTAAGATTAAGTGAATCTTAGGTGGAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCTTGACCCTGGCTTCTAAGATTAAGTGAATCTTAGGTGGAGCCC  200

seq1  TTGTTGATCCCAGTTGTTAACAATGAATTCTATCCCAGGTGGTTCCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGATCCCAGTTGTTAACAATGAATTCTATCCCAGGTGGTTCCTGTT  250

seq1  AGACCTTCTGTGTTTGCATTCCTCTGTTTTATGTAAGAATCCAGTAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTCTGTGTTTGCATTCCTCTGTTTTATGTAAGAATCCAGTAACCT  300

seq1  CTTTCTACCTTGCGGGTATGTCACCCAACTTCCTTATTGTCTTCTGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTACCTTGCGGGTATGTCACCCAACTTCCTTATTGTCTTCTGTATA  350

seq1  AAAAGTTTGATGCTCAATTTGACAAATTACATTCAGATTCTACACAACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTGATGCTCAATTTGACAAATTACATTCAGATTCTACACAACCT  400

seq1  CTCCTGTGTGCATCTGTCTGTCAATTCATCCGATGCTTTGCCCACCTGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTGTGCATCTGTCTGTCAATTCATCCGATGCTTTGCCCACCTGCG  450

seq1  ACTAGAGACCCGTTCCACGCAGACAAAGGGGCCCAAAGTGTCTGCGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGACCCGTTCCACGCAGACAAAGGGGCCCAAAGTGTCTGCGGCAT  500

seq1  ACAGCATATGTAAGAGGATGGCTTGGAAGGGATGAGAGGGGCTCATCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATATGTAAGAGGATGGCTTGGAAGGGATGAGAGGGGCTCATCTCA  550

seq1  GGAAGCTGAAGTGTGGCAGGCTCTGGTGAGGGTAGAGGACAGGGCACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTGAAGTGTGGCAGGCTCTGGTGAGGGTAGAGGACAGGGCACAGG  600

seq1  GAGCATAAGAAGTAATAGACTGGGAGGAGACAGATGACAGATGATAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATAAGAAGTAATAGACTGGGAGGAGACAGATGACAGATGATAGTCT  650

seq1  CATAGGTGACATACAGGAGATAAATAATAGATAGATGGTAGAGATAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTGACATACAGGAGATAAATAATAGATAGATGGTAGAGATAGATA  700

seq1  G-AAGACAGACAGACAGACAGTAAAGTAAACACAAGAGATTCAGTCAAGG  749
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACAGACAGACAGACAGTAAAGTAAACACAAGAGATTCAGTCAAGG  750

seq1  AAAAGATTGGTGCTGTGGTTTCAGACTCCATTAATGACAGAACACAAGAC  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAAAGATTGGTGCTGTGGTTTCAGACTCCATTAATGACAG-ACACAAGAC  799

seq1  CATGCATGTGCCGGCTGTAGTACAAATGTTATTAATACCATAGATCATCG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGTGCCGGCTGTAGTACAAATGTTATTAATACCATAGATCATCG  849

seq1  TTCCCACACAGAAAACAGAAATTATG-TTCCTTACCTGCAATACATCATC  898
      |||||||||||||||||||||||||| ||| |||||||| ||||||||||
seq2  TTCCCACACAGAAAACAGAAATTATGTTTCTTTACCTGC-ATACATCATC  898

seq1  CCAAGACACACTAGTTCCATTAAC-AGTTTCCATAAGAGCCATCGCCTTC  947
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CC-AGACACACTAGTTCCATTAACAAGTTTCCATAAGAGCCATCGCCTTC  947

seq1  CTTGAAACTTCATTTAAAAACCTTATATC-TTACAGCAAAG-CCTTTC-T  994
      ||||||||||||||| ||||||||||||| ||||||||||| |||||| |
seq2  CTTGAAACTTCATTT-AAAACCTTATATCTTTACAGCAAAGTCCTTTCTT  996

seq1  GCTAAAGCCAGCAATAAAACATTTTACATAAAAAACAACAAAGGTGGGGT  1044
      ||||||| |||| || ||||||||  | | ||||||||||||   | || 
seq2  GCTAAAG-CAGC-ATTAAACATTT--CCT-AAAAACAACAAA---GTGGC  1038

seq1  TGATTTTTCAGATATTAGGGAATCTTGAGTAGCAA  1079
      ||||||       ||||||||||| ||| ||||||
seq2  TGATTT-----CGATTAGGGAATC-TGA-TAGCAA  1066

seq1: chr14_119306025_119307088
seq2: B6Ng01-074P05.g_68_1129 (reverse)

seq1  GTCTATGTGTGTGCATGGGTGTGCTTGAGCGTCCCTGGGTTGCA-CTCTC  49
      ||||||| | |||||||||||||| ||||||||||||||||||| |||||
seq2  GTCTATGGGAGTGCATGGGTGTGC-TGAGCGTCCCTGGGTTGCACCTCTC  49

seq1  CACACGGGGACAAAGTGGCAGGGTGGGTGGCTAACTGTCTTACCTGCCCC  99
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGAGGACAAAGTGGCAGGGTGGGTGGCTAACTGTCTTACCTGCCCC  99

seq1  TTTTCCTTGCTGTGTTCTTCGTTGAGAACTTGAAATCGATCTGTCCACTT  149
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTGCTGTG-TCTTCGTTGAGAACTTGAAATCGATCTGTCCACTT  148

seq1  GCTTGCCTGCAGGAGAGTAAAACAAATGATATACCTGTAACACAGAAACC  199
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GC-TGCCTGCAGGAGAGTAAAACAAATGATATACCTGTAACACAGAAACC  197

seq1  CATTCCACACTGGAGCCTGCTCTTTACCGGGTGCCTATGAAGCCCGACAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCACACTGGAGCCTGCTCTTTACCGGGTGCCTATGAAGCCCGACAA  247

seq1  GCTAGTAAAATCCCTGCTGGCATTTTTAGAGTGTATGTGGCCGTAATGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTAAAATCCCTGCTGGCATTTTTAGAGTGTATGTGGCCGTAATGCT  297

seq1  CACACCCATGTCTCTGGCTGTACTGTGGGGCTGGGATTTGTAGATGTTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCATGTCTCTGGCTGTACTGTGGGGCTGGGATTTGTAGATGTTTG  347

seq1  TACGACACAGATAGTATTTTAGGTTACAAAGTGGGGGCGGGGGAGTCTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGACACAGATAGTATTTTAGGTTACAAAGTGGGGGCGGGGGAGTCTGT  397

seq1  CACACTCTGGGTATGGAGGTGTCCTAATTCAGGCTACAATTGCTGGGCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCTGGGTATGGAGGTGTCCTAATTCAGGCTACAATTGCTGGGCTC  447

seq1  AAACACCATGACCAAGGCAAGCTGGGGTGGGAAGGGACACAGGTACAGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCATGACCAAGGCAAGCTGGGGTGGGAAGGGACACAGGTACAGGA  497

seq1  AGTCAGGACAGGAACTCAAGCAGGGGAGGACGCAGAGGCCATGGAGGGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGACAGGAACTCAAGCAGGGGAGGACGCAGAGGCCATGGAGGGCA  547

seq1  CTGCTTACTGCCTTGCTCCACACGGTCTGCTCAGCCACCGGCCCAGGGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTACTGCCTTGCTCCACACGGTCTGCTCAGCCACCGGCCCAGGGAT  597

seq1  GGCCGCACTCACATGGCTTAAGCCCTTCCGTATCAATCACTGGTTCAGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCACTCACATGGCTTAAGCCCTTCCGTATCAATCACTGGTTCAGAA  647

seq1  ATCGGTCTATAGGGTTTGTCAGCCTCTGGACCTTGTTTTCTCAAGTGAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGTCTATAGGGTTTGTCAGCCTCTGGACCTTGTTTTCTCAAGTGAGG  697

seq1  CTCCCTCCTCTCCAGCGTCACCCTTGTGTCAAGTTGACTGGAAACTAGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCTCTCCAGCGTCACCCTTGTGTCAAGTTGACTGGAAACTAGCC  747

seq1  AGCACAGGGGAGAAGAGCCACGGGCAGGATTTCAGGGAGTGAGTATGGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGGGAGAAGAGCCACGGGCAGGATTTCAGGGAGTGAGTATGGCT  797

seq1  GTGTGCCAGTAAGACATTATTTGAAAACAGCAGATGCTAGTGTGAGACGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCAGTAAGACATTATTTGAAAACAGCAGATGCTAGTGTGAGACGC  847

seq1  TAAGGGGTCAAAGAACTAGGGTTGCTGGGTGCCTGGGTTCAAAACAGGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGGTCAAAGAACTAGGGTTGCTGGGTGCCTGGGTTCAAAACAGGCA  897

seq1  ACTCGGTGCACGGGAGACACTGTGGTCTGTGGAAGGTAAATGTCAGCTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGTGCACGGGAGACACTGTGGTCTGTGGAAGGTAAATGTCAGCTTC  947

seq1  TAATCTCCTACTCACGGCAGTCACGTGGCTGAGCAACCACTGGCAGCTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCCTACTCACGGCAGTCACGTGGCTGAGCAACCACTGGCAGCTTG  997

seq1  GAAGAGGATTAAAAAGACACCCTGCACTGTAGAGGCCAGGGGTGCACATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGATTAAAAAGACACCCTGCACTGTAGAGGCCAGGGGTGCACATG  1047

seq1  ACCACGGGAGAATTC  1064
      |||||||||||||||
seq2  ACCACGGGAGAATTC  1062