BAC Information

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BAC

Clone NameB6Ng01-075I14
Chromosome14 (Build37)X (Build37)
Map Location 68,948,276 - 68,948,45098,128,197 - 98,129,384
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEbf2, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072
Downstream geneAdam7, Adamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075I14.bB6Ng01-075I14.g
ACCDH892071DH892072
length9971,173
definitionDH892071|Mus musculus domesticus DNA, BAC clone: B6Ng01-075I14, 5' end.DH892072|Mus musculus domesticus DNA, BAC clone: B6Ng01-075I14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(68,948,276 - 68,948,450)(98,128,197 - 98,129,384)
sequence
gaattccagggtaagagcctgtcgtggaagcatcctagccttctcagaaa
tacaagcagctacatatgtgctgatctctgctcttgtcttggttggttgg
gtgttttgttttttggtttctgttgccctctctggttcttaggagagtgt
gattgttgtgtgctgcctcataggaaattctgggattccgataggtatgt
ccactggggattctgggcaaaacgtttttctaggtattaggagctgacat
ttaggaatggggatgggctaggagggcggggtgaagctgtccacaggagg
aaggaaggtacggttttccactgggtttttgctttaatccctttggaaat
gggagagggcagcaagtggtctgctacggaactgggcatgggactggggg
attgggactcagaggaatggagggagatgtgaaggtctgcagttatcctc
catgcctccgtgactggagtgcacaatttcttttttcttcctttttcttt
ccctttctttctttctttctttctttctttcttttcttcttctttttttt
ttttttttcgagacagggtttctctgtgtagccctggctgtcctggaact
cactctgtagaccaggctggcctcgaactcagaaatccacctgcctctgc
ctcccaagtgctgggatcaaaggcgtgcgccaccactgcctggcgagtgc
acaattaatttctttctttctttctttctttctttctttctttctttctt
tctttcttttctttctttccttccttccttccttccttccttccttcttt
ctttctttctttctttctttctttctttctttcttttttggttttgggtt
tttcgagatagggttttctctgtgtagccccaactgtcctggaacttcac
tctgtaaaccagctggcctcggactcagaaatcttgcctgcctctgcctc
ccaagtggctggatttaaaggtgggcggcgtgcgccaccacgcctgg
gaattcacaactgaggaatctcaaatggctgagaagcaccttaaaaacag
ttcaacatccttaaacatcagggaaatgcaaatcaaaacgaccctgagat
tccacctcacaccagtcagaatggctaaaatcaaaacctcaggtgacatc
acatgttggtgaggatgtgaagaaagatgaacactccttctttgccggtg
ggattgcaaactggtacaaccactatagtgaattcttaactgctgtgaat
ttttattataattgccaacaacttcagagatgtttggctcaaatgatggt
ttcccgaattcttgtccaatatttgcccatttaagatcatttagataggt
ggttgcttttttttaaatactttcacatactctctagtttcgttgtgcat
tactgtataattattatgtaagagttatatctattcagtctattatcttg
aaaactatttacttactgtggactttttattctctgaggattttttattg
ttaacattaatgcataaagaacatttatacctctgaaagcatcaccctcc
atgattgcgatcttgaatatataataccgagtgaaaacatgtgtaggatc
cttttgctcaacttctgctatggcctctttagcctgaaaagaaaataaaa
accataaggttgattttgtaaaagtcctcaccatattttactaatatcat
tgttagacacaattgtttgaggagtactcacaatgataagaaaggaacct
aaaaaaaatatttttaaaaatctattgcctttacaaggttagagaaatat
gtttgcctctagaagagtaaataagccatgttaaaatagctttccttctg
aaaacaaccataaatgttggataatatatttcaaatatttttaactaaga
caaaataatagcacacttgggaaagtagcaaaggtcatgaaatcacatct
aagaaaaagttgagacccagaaagtagagattaaactccttggctggtag
tggttgtggaatatggacaatattactgaaattgacaggcctggtaatca
ggactagacatcaattccacaagatcatattgttagactaggtcagcaga
ttacttactacaattactacctccgaaagaccactgaaggtgtgactttg
ggcctggataaagggaacacacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_68948276_68948450
seq2: B6Ng01-075I14.b_589_1040 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  CCAGGCGTGGTGGCGCACGCCGCCCACCTTTAAATCCAGCCACTTGGGAG  50

seq1  --------------------------------------------------  0
                                                        
seq2  GCAGAGGCAGGCAAGATTTCTGAGTCCGAGGCCAGCTGGTTTACAGAGTG  100

seq1  --------------------------------------------------  0
                                                        
seq2  AAGTTCCAGGACAGTTGGGGCTACACAGAGAAAACCCTATCTCGAAAAAC  150

seq1  --------------------------------------------------  0
                                                        
seq2  CCAAAACCAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  200

seq1  --------------------------------------------------  0
                                                        
seq2  GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAAGAAAAGAAAGAAAG  250

seq1  --------------------------------CCAG-GCGTGGTGGCGCA  17
                                        ||    |  | | |||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAATTAATTGTGCA  300

seq1  ---GCCGGGC-GTGGTGGCGCATGTCTTTAATCCCAGCACTCGGGAGGCA  63
         ||| ||| ||||||||||| | |||| ||||||||||| ||||||||
seq2  CTCGCCAGGCAGTGGTGGCGCACGCCTTTGATCCCAGCACTTGGGAGGCA  350

seq1  GAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGT  113
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  GAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGT  400

seq1  TCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACAACAA  163
      ||||||||||||||||||| ||||||||||||||||||||||||      
seq2  TCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAA------  444

seq1  CAACAAAAAAAA  175
          ||||||||
seq2  ----AAAAAAAA  452

seq1: chrX_98128197_98129384
seq2: B6Ng01-075I14.g_68_1240

seq1  GAATTCACAACTGAGGAATCTCAAATGGCTGAGAAGCACCTTAAAAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAACTGAGGAATCTCAAATGGCTGAGAAGCACCTTAAAAACAG  50

seq1  TTCAACATCCTTAAACATCAGGGAAATGCAAATCAAAACGACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAAACATCAGGGAAATGCAAATCAAAACGACCCTGAGAT  100

seq1  TCCACCTCACACCAGTCAGAATGGCTAAAATCAAAACCTCAGGTGACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACACCAGTCAGAATGGCTAAAATCAAAACCTCAGGTGACATC  150

seq1  ACATGTTGGTGAGGATGTGAAGAAAGATGAACACTCCTTCTTTGCCGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTGGTGAGGATGTGAAGAAAGATGAACACTCCTTCTTTGCCGGTG  200

seq1  GGATTGCAAACTGGTACAACCACTATAGTGAATTCTTAACTGCTGTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCAAACTGGTACAACCACTATAGTGAATTCTTAACTGCTGTGAAT  250

seq1  TTTTATTATAATTGCCAACAACTTCAGAGATGTTTGGCTCAAATGATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTATAATTGCCAACAACTTCAGAGATGTTTGGCTCAAATGATGGT  300

seq1  TTCCCGAATTCTTGTCCAATATTTGCCCATTTAAGATCATTTAGATAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGAATTCTTGTCCAATATTTGCCCATTTAAGATCATTTAGATAGGT  350

seq1  GGTTGCTTTTTTTTAAATACTTTCACATACTCTCTAGTTTCGTTGTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTTTTTTTTAAATACTTTCACATACTCTCTAGTTTCGTTGTGCAT  400

seq1  TACTGTATAATTATTATGTAAGAGTTATATCTATTCAGTCTATTATCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTATAATTATTATGTAAGAGTTATATCTATTCAGTCTATTATCTTG  450

seq1  AAAACTATTTACTTACTGTGGACTTTTTATTCTCTGAGGATTTTTTATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATTTACTTACTGTGGACTTTTTATTCTCTGAGGATTTTTTATTG  500

seq1  TTAACATTAATGCATAAAGAACATTTATACCTCTGAAAGCATCACCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTAATGCATAAAGAACATTTATACCTCTGAAAGCATCACCCTCC  550

seq1  ATGATTGCGATCTTGAATATATAATACCGAGTGAAAACATGTGTAGGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGCGATCTTGAATATATAATACCGAGTGAAAACATGTGTAGGATC  600

seq1  CTTTTGCTCAACTTCTGCTATGGCCTCTTTAGCCTGAAAAGAAAATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTCAACTTCTGCTATGGCCTCTTTAGCCTGAAAAGAAAATAAAA  650

seq1  ACCATAAGGTTGATTTTGTAAAAGTCCTCACCATATTTTACTAATATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAAGGTTGATTTTGTAAAAGTCCTCACCATATTTTACTAATATCAT  700

seq1  TGTTAGACACAATTG-TTGAGGAGTACTCACAATGATAAGAAAGGAACCT  749
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTTAGACACAATTGTTTGAGGAGTACTCACAATGATAAGAAAGGAACCT  750

seq1  AAAAAAAATA-TTTTAAAAATCTATTGCC-TTACAAGGTTAGAGAAATAT  797
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  AAAAAAAATATTTTTAAAAATCTATTGCCTTTACAAGGTTAGAGAAATAT  800

seq1  GTTTGCCTCTAGAAGAGTAAATAAGCCATGTTAAAATAGCTTTCCTTCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCTCTAGAAGAGTAAATAAGCCATGTTAAAATAGCTTTCCTTCTG  850

seq1  AAAACAACCATAAATGTTGGATAATATATTTCAAATATTTTTAAACTAAG  897
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAACAACCATAAATGTTGGATAATATATTTCAAATATTTTT-AACTAAG  899

seq1  ACAAAATAATAGCACACTTGGGAAAGTAGCAAAAGGTCATGAAATCACAT  947
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACAAAATAATAGCACACTTGGGAAAGTAGC-AAAGGTCATGAAATCACAT  948

seq1  CTAAGAAAAAGTTGAGACCCAGAAAGGTAGAGAATTAAAACTCCTTTGGC  997
      ||||||||||||||||||||||||| |||||||  | ||||||| |||||
seq2  CTAAGAAAAAGTTGAGACCCAGAAA-GTAGAGA--TTAAACTCC-TTGGC  994

seq1  TGGTAGGTGTTTGT-GAATATGGACAAATATTTACTGAAAATTTGACAGG  1046
      ||||| ||| |||| |||||||||| |||| |||||||||  ||||||||
seq2  TGGTA-GTGGTTGTGGAATATGGAC-AATA-TTACTGAAA--TTGACAGG  1039

seq1  CCTTGGTAAATCAGGAACTAGACATCAAATTCTACAAGATCATATGTTTA  1096
      || |||| ||||||| |||||||||| ||||| ||||||||||||  |||
seq2  CC-TGGT-AATCAGG-ACTAGACATC-AATTCCACAAGATCATATTGTTA  1085

seq1  GACTAGGTCAGCAGTATACTTAATCTTACATATAACTA-CTCCAGAAGAC  1145
      ||||||||||||||  ||||||    |||| || |||| ||||  |||||
seq2  GACTAGGTCAGCAGATTACTTA---CTACA-ATTACTACCTCCGAAAGAC  1131

seq1  CACAGACAGAGTGACTTTGGCCCTGGATAAAAGGGAGCACACC  1188
      ||| ||  | |||||||||| ||||||| ||||||| ||||||
seq2  CACTGAAGGTGTGACTTTGGGCCTGGAT-AAAGGGAACACACC  1173