BAC Information

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BAC

Clone NameB6Ng01-076D06
Chromosome14 (Build37)X (Build37)
Map Location 89,345,881 - 89,346,921100,165,889 - 100,166,451
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076D06.bB6Ng01-076D06.g
ACCDH892540DH892541
length1,0421,106
definitionDH892540|Mus musculus domesticus DNA, BAC clone: B6Ng01-076D06, 5' end.DH892541|Mus musculus domesticus DNA, BAC clone: B6Ng01-076D06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,345,881 - 89,346,921)(100,165,889 - 100,166,451)
sequence
gaattctgctaaggccttgacttctatttaccttcttgctttataaatct
ctgtttgttaaaaataataaaaatcatcattaaaatatgtgccttcctgc
taagtttctaataacctaagttaaaatgtaattcactccactcctaagca
acaaatcaaattaacaccttccaaacaagcgttaccaacaaagcagtaca
attaaatttcaaccatagtcaaacaaatttacataatcaattcattgttt
agacatctggaaataattttctaaactcatttatgaatcatttaaagcag
aaaatgtattatttacatatgtatatcttcacaaaatactttctgataga
ggttaagttacaaacactttgaaataaatttagtactaaaaattcacatt
tctcttttatctggatattagctaaaattttatatagattcatattacaa
aaattacgtcatagacttcacaggaatatatgagaatattgttgaattat
taaactaatgtttttacttcataatatatgaaacttttaagaatacagac
ttactgctggattatactaacccttcaaagaattcacatcaatattataa
aaaaaccataccataaaacaaaaagaagagggttgtttctaaactattgc
tacaaaggcaatatgaactcagtcccaaatttagattagattatgaaaca
agtattgtaataagcattgataaaaaatcctcaataaaatccttcaacta
attcaataaatagtttatctacttcatatgtcactattagtaggatttgt
accaacaatagaaggttgcaaaacacataaatatatatatatatatatga
tataatatatataaatagaacacatatatatatataatatatatatataa
tataacacataaatatagtaaagagctagtatcacatgattgatttcatt
ttgtgcaaatatgaagacttcaacataatttgaagacttcatgaaattct
ttatgagggaattagaaaatagattgtctagatgaatataaa
gaattctttgtttagctgtgagccccattttttaatgggattatttgatt
ttctggagtccaccttcttgagttctatatatatatatataggatattag
tgccctatctgatttaggataggtaaagatcttttcccaatctgttggtg
gtctttttgtctaattgagagtgtcttttgccttgcaactttatgaggtc
ccatttattgattcttgaacttaccgcaaaagtcattgctattctattca
gaaatttttcccctgtacccatatcttcgaggctttccctactttcttct
ctatatgttgcagtgtctctggttttatgtggagttccttaatcctctta
gatttgaccttagtacaaggagataggaatggatcaatttgcattcttct
acatgataaccaccagttgtgccagcaccatttgttgaaaatactgtctt
ttttccactggatggttttatctgccttgtcaaagctcaagtgaccatag
gtgtgtgggttcatctctaggtcttcaattctattccattggtgtacttg
tctgtcgatataccaataccatgcagtttttatcacaattgctctgtagt
atagctttaggtcaggcatggtgattccaccagaggtttttttatcctta
agaagagtttttgctatcctcggttttttgttatttccagatgaatctgt
gaagtgccctttctaattcgttgaagaattgagttggaattttgatgggg
attgcattgaatctgtagattgcttttggcaagatagccatttttactag
attgatcctgccaatccataagcatggaagatctttccatcttctgagat
cttcttaatttctttcttcagatccttgaagttcttatcatatagatctt
tcacttcctcagaaagagtcatgccaaggtattttatattatttgtggct
atgagaagagtgttgtttccctaatttcttttgttgtcctttgtgtacaa
aaggcattgacttgtttgagttaatttatatccagctactcacgagctgt
ttatcgggctaaggagttctctggtggaattttagggcaccggtaatata
ctatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_89345881_89346921
seq2: B6Ng01-076D06.b_44_1084 (reverse)

seq1  TTAT-TTCATCTAAGACAATCCTATTTCTAATTCCCTCATAAAGAATTTC  49
      |||| ||||||| ||||||||   ||||||||||||||||||||||||||
seq2  TTATATTCATCT-AGACAATCTATTTTCTAATTCCCTCATAAAGAATTTC  49

seq1  ATGAAGGTCTTCAAATTATGTTGAAGTCTTCATATTTGCACAAAATGAAA  99
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAA-GTCTTCAAATTATGTTGAAGTCTTCATATTTGCACAAAATGAAA  98

seq1  TCAATCATGTGATACTAGCTCTTTACTATATTTATGTGTTATATTATATA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCATGTGATACTAGCTCTTTACTATATTTATGTGTTATATTATATA  148

seq1  TATTATATTATATATATATATGTGTTCTA-TTATATATATTATATCATAT  198
      || |||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TA-TATATTATATATATATATGTGTTCTATTTATATATATTATATCATAT  197

seq1  ATATATATATATATTTATGTGTTTTGCAACCTTCTATTGTTGGTACAAAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATTTATGTGTTTTGCAACCTTCTATTGTTGGTACAAAT  247

seq1  CCTACTAATAGTGACATATGAAGTAGATAAACTA-TTATTGAATTAGTTG  297
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTACTAATAGTGACATATGAAGTAGATAAACTATTTATTGAATTAGTTG  297

seq1  AAGGATTTTATTGAGGATTTTTTATCAATGCTTATTACAATACTTGTTTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTTTATTGAGGATTTTTTATCAATGCTTATTACAATACTTGTTTC  347

seq1  ATAATCTAATCTAAATTTGGGACTGAGTTCATATTGCCTTTGTAGCAATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTAATCTAAATTTGGGACTGAGTTCATATTGCCTTTGTAGCAATA  397

seq1  GTTTAGAAACAACCCTCTTCTTTTTGTTTTATGGTATGGTTTTTTTATAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAAACAACCCTCTTCTTTTTGTTTTATGGTATGGTTTTTTTATAA  447

seq1  TATTGATGTGAATTCTTTGAAGGGTTAGTATAATCCAGCAGTAAGTCTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATGTGAATTCTTTGAAGGGTTAGTATAATCCAGCAGTAAGTCTGT  497

seq1  ATTCTTAAAAGTTTCATATATTATGAAGTAAAAACATTAGTTTAATAATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAAAAGTTTCATATATTATGAAGTAAAAACATTAGTTTAATAATT  547

seq1  CAACAATATTCTCATATATTCCTGTGAAGTCTATGACGTAATTTTTGTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATATTCTCATATATTCCTGTGAAGTCTATGACGTAATTTTTGTAA  597

seq1  TATGAATCTATATAAAATTTTAGCTAATATCCAGATAAAAGAGAAATGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATCTATATAAAATTTTAGCTAATATCCAGATAAAAGAGAAATGTG  647

seq1  AATTTTTAGTACTAAATTTATTTCAAAGTGTTTGTAACTTAACCTCTATC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAGTACTAAATTTATTTCAAAGTGTTTGTAACTTAACCTCTATC  697

seq1  AGAAAGTATTTTGTGAAGATATACATATGTAAATAATACATTTTCTGCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTATTTTGTGAAGATATACATATGTAAATAATACATTTTCTGCTT  747

seq1  TAAATGATTCATAAATGAGTTTAGAAAATTATTTCCAGATGTCTAAACAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATTCATAAATGAGTTTAGAAAATTATTTCCAGATGTCTAAACAA  797

seq1  TGAATTGATTATGTAAATTTGTTTGACTATGGTTGAAATTTAATTGTACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGATTATGTAAATTTGTTTGACTATGGTTGAAATTTAATTGTACT  847

seq1  GCTTTGTTGGTAACGCTTGTTTGGAAGGTGTTAATTTGATTTGTTGCTTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTTGGTAACGCTTGTTTGGAAGGTGTTAATTTGATTTGTTGCTTA  897

seq1  GGAGTGGAGTGAATTACATTTTAACTTAGGTTATTAGAAACTTAGCAGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGAGTGAATTACATTTTAACTTAGGTTATTAGAAACTTAGCAGGA  947

seq1  AGGCACATATTTTAATGATGATTTTTATTATTTTTAACAAACAGAGATTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACATATTTTAATGATGATTTTTATTATTTTTAACAAACAGAGATTT  997

seq1  ATAAAGCAAGAAGGTAAATAGAAGTCAAGGCCTTAGCAGAATTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCAAGAAGGTAAATAGAAGTCAAGGCCTTAGCAGAATTC  1041

seq1: chrX_100165889_100166451
seq2: B6Ng01-076D06.g_632_1176 (reverse)

seq1  TGATAGTATA-TATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAA  49
      |||||||||| ||   ||| |||| |||||||||||||||||||||| | 
seq2  TGATAGTATATTACCGGTG-CCCT-AAAATTCCACCAGAGAACTCCTTAG  48

seq1  CCTGATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAACA  99
      || |||||||||||   ||| ||||||||||||| |||||||||||||||
seq2  CCCGATAAACAGCT--CGTG-AGTAGCTGGATAT-AAATTAACTCAAACA  94

seq1  AGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGGAAGAAATT  149
      ||||||| |||||| | ||||||||| | ||  |        ||||||||
seq2  AGTCAAT-GCCTTT-TGTACACAAAGGACAACAA--------AAGAAATT  134

seq1  AGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATACCTTGG  199
      ||||||||||||| |||||| |||| ||||||||||||||||||||||||
seq2  AGGGAAACAACACTCTTCTC-ATAGCCACAAATAATATAAAATACCTTGG  183

seq1  CGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGT  249
      | |||||||  || |||||||||||||||| |||||||||||||||||| 
seq2  CATGACTCTTTCTGAGGAAGTGAAAGATCTATATGATAAGAACTTCAAGG  233

seq1  CTCTAAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCA  299
       ||| |||||||||||| |||||||||||||||||||||||||||| |||
seq2  ATCTGAAGAAAGAAATT-AAGAAGATCTCAGAAGATGGAAAGATCTTCCA  282

seq1  TGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAA  349
      |||| ||||||||||||||||||  | |||||||||||||||||||||||
seq2  TGCTTATGGATTGGCAGGATCAATCTAGTAAAAATGGCTATCTTGCCAAA  332

seq1  AGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCT  382

seq1  TCAACGAATTAGAAAGGGCAATCTTCAAATTCATCTGG-AATAAAAAAAA  448
      |||||||||||||||||||| |   || |||||||||| ||||| |||||
seq2  TCAACGAATTAGAAAGGGCACTTCACAGATTCATCTGGAAATAACAAAAA  432

seq1  ACCTAGGATAGCAAAAAACTCTTCTCAAGTATAAAAGAACCTCTGGTGGA  498
      ||| |||||||| |||||||||||| ||| |||||| |||||||||||||
seq2  ACCGAGGATAGC-AAAAACTCTTCTTAAGGATAAAAAAACCTCTGGTGGA  481

seq1  ATCACCATGCTGGACCTAAAGCTTTACTAAAGAGCAATTGTGATTAAAAA  548
      ||||||||||  ||||||||||| ||||| ||||||||||||| ||||||
seq2  ATCACCATGCCTGACCTAAAGCTATACTACAGAGCAATTGTGA-TAAAAA  530

seq1  CTGCATGGTATTGGT  563
      |||||||||||||||
seq2  CTGCATGGTATTGGT  545