BAC Information

Click to search

BAC

Clone NameB6Ng01-077K04
Chromosome9 (Build37)14 (Build37)
Map Location 21,182,236 - 21,183,421108,185,237 - 108,185,334
singlet/doubletsingletsinglet
Overlap geneIlf3
Upstream geneZfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2
Downstream geneQtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077K04.bB6Ng01-077K04.g
ACCDH893557DH893558
length1,162644
definitionDH893557|Mus musculus domesticus DNA, BAC clone: B6Ng01-077K04, 5' end.DH893558|Mus musculus domesticus DNA, BAC clone: B6Ng01-077K04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,182,236 - 21,183,421)(108,185,237 - 108,185,334)
sequence
gaattcctaaagattcttaggtagaaacaaaattagcaagaggcccccag
ctcctgccacatcactccacacagatctacacatgtctccagggccggga
ctcaactcagacaccaggacacccattgctggaatttccaatcccaataa
acctacagaaaaagatgcacaacccagttattataatgttaagctataag
cctagattgggcagatctaaacattacactaatttgttccccagctataa
gacccctttcctctcctggccacatggctctggtccatcatggcctctcc
tactcttctgcctctctccctgcacccactctcaaacctctagtcccact
taaaactctgtccaatcataggctctagcctttaccgaccagctagagtg
gggagaaggttggtaagagattacctgagtacatgatgggctgctagttg
ggggcaacaccccttgaggaaaccgaatcaacaccaggatacaaacagca
tcaggaaaaaccacaacagacaccaaccagcctctctgagaagctgaggg
ctgagggaggcatggagattaagaacttccaagtggtcagggacaaggaa
cacgttctctcccttttattattgaagcagcattccaagtctacacgaag
ccttaagcctacggtgtgctggacatctttccacctctaattacatacaa
ggaaatgtttccaacactgtcctgctgaagaacaaaacagaaaatcatca
attcttcccaacactgtggggaatggtcctgaaggaagggacatactcat
ctgacagtaaatgtggctgtaagctgacagcactgtgcagcacccgacag
ttcctttcttcacctttgattccaccccagactcctgcaatctaaaagca
gcccaaccagctgccagcaatctaaactttcacagagattaaaagctctc
atacaaattctcaaggctagctcagttccagcatcacacagcagctcaca
ctatctgcatctttactccagttccaggagatctgatatcctcccctctg
cccctgagaaactgcaagcatgggtgcgtacctactacggaatcctccaa
cgtgaaaagaaagaaaaatatgtttactgtggagtaaagaagtctcattt
aattctctcagg
gaattcactcctgagcaagacttattggtggatgcttgtgatcccagcta
ctctggaagctgaagtaggaggatctcaagttcaaggccagcctgaacta
taggactgttcaaagccacctagacaactaagtgagatcctttttgaaaa
taaaaaaggatgggaatctaacctggtggcagagtaaatgcctagcgtat
aagaggccctggtgagacagcacagcaggtctaaggacttgctgccaagg
ctgaggacctgagtgcaatcctgtggggaattgcaggctggtctccagtc
gagctggggtctgaacccgatggtcataattcacttacataacacggtag
gcgttccctcatgctcctggaaatctggcccctgcctaaggtaccacctc
ccacagcccccacaagagaagcatggtcagtagtcttgtaagcaatggcc
caagcttctgaccttcaggctaaactcctccccagttacatagcaacagt
gaagatcataaaaaggggtgctcagccccacctcgctctcttactctcac
actcttacctcttacccctcacttgcacactctctcctctctttgtcttc
tctctcctttctctctctctctctctctctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_21182236_21183421
seq2: B6Ng01-077K04.b_43_1204 (reverse)

seq1  CTTGAGAGAATTATAATTGAGACTTTCTTTTTAACTTCACAGTAAACACT  50
      | |||||||||  ||| |||||| ||||||   ||| ||||||||||| |
seq2  CCTGAGAGAAT--TAAATGAGAC-TTCTTT---ACTCCACAGTAAACA-T  43

seq1  ATTTTTCTTTTCTTTTTTTAACGTGTGAGGATTTCCCTGTAAGTATGTTA  100
      ||||||||    || |||| ||||  |||||||   | || |||| | ||
seq2  ATTTTTCT----TTCTTTTCACGTTGGAGGATT---CCGT-AGTA-GGTA  84

seq1  CGCACCCAATGCTTGCAGTGTCCTCAGGGGCAAGAGGGGAGGATATCAGA  150
      ||||||| ||||||||||| | ||||||||| ||||||||||||||||||
seq2  CGCACCC-ATGCTTGCAGT-TTCTCAGGGGC-AGAGGGGAGGATATCAGA  131

seq1  TCTCCTGGAACTGGAGTTAAAGATGCAGATAGTTGTGAGCTGCTGTGTGG  200
      |||||||||||||||| ||||||||||||||| ||||||||||||||| |
seq2  TCTCCTGGAACTGGAG-TAAAGATGCAGATAG-TGTGAGCTGCTGTGT-G  178

seq1  ATGCTGGGAACTGAGCTAGCCTTGAGAATTTGTATGAGAGCTTTTAATCT  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCT-GGAACTGAGCTAGCCTTGAGAATTTGTATGAGAGCTTTTAATCT  227

seq1  CTTGTGAAAGTTTAGATTGCTGGCAGCTGGTTGGGCTGCTTTTAGATTGC  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TGTGAAAGTTTAGATTGCTGGCAGCTGGTTGGGCTGCTTTTAGATTGC  276

seq1  AGGAGTCTGGGGTGGAATCAAAGGTGAAGAAAGGAACTGTCGGGTGCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCTGGGGTGGAATCAAAGGTGAAGAAAGGAACTGTCGGGTGCTGC  326

seq1  ACAGTGCTGTCAGCTTACAGCCACATTTACTGTCAGATGAGTATGTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCTGTCAGCTTACAGCCACATTTACTGTCAGATGAGTATGTCCCT  376

seq1  TCCTTCAGGACCATTCCCCACAGTGTTGGGAAGAATTGATGATTTTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGGACCATTCCCCACAGTGTTGGGAAGAATTGATGATTTTCTGT  426

seq1  TTTGTTCTTCAGCAGGACAGTGTTGGAAACATTTCCTTGTATGTAATTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTTCAGCAGGACAGTGTTGGAAACATTTCCTTGTATGTAATTAG  476

seq1  AGGTGGAAAGATGTCCAGCACACCGTAGGCTTAAGGCTTCGTGTAGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAAAGATGTCCAGCACACCGTAGGCTTAAGGCTTCGTGTAGACTT  526

seq1  GGAATGCTGCTTCAATAATAAAAGGGAGAGAACGTGTTCCTTGTCCCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCTGCTTCAATAATAAAAGGGAGAGAACGTGTTCCTTGTCCCTGA  576

seq1  CCACTTGGAAGTTCTTAATCTCCATGCCTCCCTCAGCCCTCAGCTTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGGAAGTTCTTAATCTCCATGCCTCCCTCAGCCCTCAGCTTCTCA  626

seq1  GAGAGGCTGGTTGGTGTCTGTTGTGGTTTTTCCTGATGCTGTTTGTATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCTGGTTGGTGTCTGTTGTGGTTTTTCCTGATGCTGTTTGTATCC  676

seq1  TGGTGTTGATTCGGTTTCCTCAAGGGGTGTTGCCCCCAACTAGCAGCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTGATTCGGTTTCCTCAAGGGGTGTTGCCCCCAACTAGCAGCCCA  726

seq1  TCATGTACTCAGGTAATCTCTTACCAACCTTCTCCCCACTCTAGCTGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTACTCAGGTAATCTCTTACCAACCTTCTCCCCACTCTAGCTGGTC  776

seq1  GGTAAAGGCTAGAGCCTATGATTGGACAGAGTTTTAAGTGGGACTAGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGGCTAGAGCCTATGATTGGACAGAGTTTTAAGTGGGACTAGAGG  826

seq1  TTTGAGAGTGGGTGCAGGGAGAGAGGCAGAAGAGTAGGAGAGGCCATGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAGTGGGTGCAGGGAGAGAGGCAGAAGAGTAGGAGAGGCCATGAT  876

seq1  GGACCAGAGCCATGTGGCCAGGAGAGGAAAGGGGTCTTATAGCTGGGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGAGCCATGTGGCCAGGAGAGGAAAGGGGTCTTATAGCTGGGGAA  926

seq1  CAAATTAGTGTAATGTTTAGATCTGCCCAATCTAGGCTTATAGCTTAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAGTGTAATGTTTAGATCTGCCCAATCTAGGCTTATAGCTTAACA  976

seq1  TTATAATAACTGGGTTGTGCATCTTTTTCTGTAGGTTTATTGGGATTGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATAACTGGGTTGTGCATCTTTTTCTGTAGGTTTATTGGGATTGGA  1026

seq1  AATTCCAGCAATGGGTGTCCTGGTGTCTGAGTTGAGTCCCGGCCCTGGAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGCAATGGGTGTCCTGGTGTCTGAGTTGAGTCCCGGCCCTGGAG  1076

seq1  ACATGTGTAGATCTGTGTGGAGTGATGTGGCAGGAGCTGGGGGCCTCTTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTAGATCTGTGTGGAGTGATGTGGCAGGAGCTGGGGGCCTCTTG  1126

seq1  CTAATTTTGTTTCTACCTAAGAATCTTTAGGAATTC  1186
      ||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTGTTTCTACCTAAGAATCTTTAGGAATTC  1162

seq1: chr14_108185237_108185334
seq2: B6Ng01-077K04.g_650_712 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTAAAAGTTGGCT  50
      |||||||||||||||||||||||||||||||||||||             
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAA-------------  37

seq1  ATGTGCACATGGAGAGAGAAGGGGAGGGGGAAGGGGAAAGAGA-GAGAG  98
                ||||||||||             |  ||||||| |||||
seq2  ----------GGAGAGAGAA-------------GACAAAGAGAGGAGAG  63