BAC Information

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BAC

Clone NameB6Ng01-077K06
Chromosome14 (Build37)
Map Location 52,953,708 - 52,954,438
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2
Downstream geneOlfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077K06.g
ACCDH893561
length864
definitionDH893561|Mus musculus domesticus DNA, BAC clone: B6Ng01-077K06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctggactaaactcgcctgatactgggttttttgggtttgtttttt
ttgtttccttttgttttatttttggttaatcgggtgggaggctattaagg
actgcttctttttaggtgtgggtatgggactgtttagatggtttactgta
ttgcaatccctttttggtatttggtatctgtctcagaaattgttcctttc
atccatattttcccgttttgtgagatataggcttttgatgtacgatctga
tgaatttttaaatttctacatgcacacgttgttatgtcccccttcatgca
tgcgatcttacatacaaatgtactgtctccatgcctgcttatggagaaaa
actaaaacttatctatcttgctgaagacttttataaacccttatatgaag
ataagacttcttttttttattgaatattttctttaattacttttcaaatg
tttccttaccttaacgaggttacaaatcccagaatccccctgaatttatc
ctttgtccccctgcttctatgatgaagttccttcacattcatatgtatta
aaatgttttgcctcagagctaggaagatgacttcattgttaagaacatat
actggttttgcagagaacccaaattcagttcccagtacccagatggcaac
ttatatcttaagaggatccaaatccaatagcctttctggaccctatgggg
cacctgcacttatcacacacacatacacacacacacacatacacacactt
aaaagaaaatgattttagccccagactgggaagaaatatagtctagtgtc
ctaccaattaattcaatcccagaacaaaaagggatgtgtgttcgtgtgtg
tgtgtgtgtgtgtg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_52953708_52954438
seq2: B6Ng01-077K06.g_781_925 (reverse)

seq1  CACACACACACACACACGCACACACAAATTCCATTCTATTTTAGAGACCC  50
      |||||||||||||||||| |||||||        ||  |||| |      
seq2  CACACACACACACACACGAACACACA--------TCCCTTTTTG------  36

seq1  CTTCTGGGAAAGAAAGCCTTCGGT--GACTAACTAGTTACTGAAAAAATT  98
       ||||||||  |||    || |||  |||  |||||  |||    | |||
seq2  -TTCTGGGATTGAATTAATT-GGTAGGAC--ACTAG--ACT----ATATT  76

seq1  CCTGTTCTCTTTTTGTGCTGGGC--------ATTGATTTTTAGATTGAGG  140
        | ||| |  | ||    ||||         ||  |||| ||  || | 
seq2  --TCTTCCCAGTCTG----GGGCTAAAATCATTTTCTTTTAAGTGTGTGT  120

seq1  CTTTAAGTATCTG-CTAAGCATGCCCTCTCCCGCTGAAGCATGCCCCCTT  189
       | |  || | ||  || |  ||                           
seq2  ATGTGTGTGTGTGTGTATGTGTGTG-------------------------  145

seq1  TCCTAAATGCTGGGACTATTGTTGCTGATATCTAATTCCTAGTAGTCAAT  239
                                                        
seq2  --------------------------------------------------  145

seq1  ACTTTAAATGCAATTTTTTTTTTTTTTGGTTTTTCAAGACACACACACAC  289
                                                        
seq2  --------------------------------------------------  145

seq1  ACACTTGTGATATATTAGAGTGGCTTATAGCCTGTGGTCTCACTATTCTG  339
                                                        
seq2  --------------------------------------------------  145

seq1  ACAAAGGCTGCCTCTCCAACCCAAGAAGCCAACTGTTGTTTGGTTTCCGA  389
                                                        
seq2  --------------------------------------------------  145

seq1  GGCTTGGTATCACAGATGGTCTTAATACTGCAGAAGTGGGCTCTAATGAC  439
                                                        
seq2  --------------------------------------------------  145

seq1  AGTGAAGGAATGAATGTGCCAATAAGAGTGAGGGCAAGCAGGGAAAGGCC  489
                                                        
seq2  --------------------------------------------------  145

seq1  AGCATTCCTTCTTCCCACATCCTTTATACAGGCTGTGACCAGAAGGTGTG  539
                                                        
seq2  --------------------------------------------------  145

seq1  CCCCAGAAGGAGGGTCTCTTACCCCAAAAGATCCAGATTTAGGGTTGCTC  589
                                                        
seq2  --------------------------------------------------  145

seq1  TTTCCACTTCAAATGATTCAATAATAACAACAATTAAAACCCCCAACCCT  639
                                                        
seq2  --------------------------------------------------  145

seq1  TTCTTGTGCTCCCCCTCCTCCTGATCTTCCTCTTCCAGACTAGTCAGACT  689
                                                        
seq2  --------------------------------------------------  145

seq1  TCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTG  731
                                                
seq2  ------------------------------------------  145