BAC Information

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BAC

Clone NameB6Ng01-077K11
Chromosome14 (Build37)
Map Location 119,180,936 - 119,232,531
singlet/doubletdoublet
Overlap geneCldn10
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4
Downstream geneDzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601, EG621324, LOC100043830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077K11.bB6Ng01-077K11.g
ACCDH893570DH893571
length1,0191,118
definitionDH893570|Mus musculus domesticus DNA, BAC clone: B6Ng01-077K11, 5' end.DH893571|Mus musculus domesticus DNA, BAC clone: B6Ng01-077K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,180,936 - 119,181,810)(119,231,427 - 119,232,531)
sequence
gaattcaggtgtggcggtcagtgctcactgtcagtttgtcagggtttaaa
attcccacagagatgcagctccgggcttgtctgtgaagttgttctcagaa
acgttcctctaaggagggaaggttagtgtgatgggaggtgtgacttgggc
ttgggctcagactggatgaaaaggaaaggtgggggaagcaggctgagcac
cactgtccacctctcgctgtgccctggccgtggacacagtgtgaccagct
ccttcacagccctgacaccatggcttctccctctgccatgatgaaccatg
tcctctcaaactgggagtccaatgtgtggcagtgaaccgtgccaccagac
agaaaacctggtaaggtcgggcagatactggaaccccggcaattctcata
attgagaatggtagacagttaaatctactcctgtccagattcctgtcctg
tgcgtgaccacgacatcccgttgagaggactgtgacaatcagtcacagag
gggcaatggctgaagcccttctacgtgcagatgaggcatccccaacatct
cagagcaggtcaatagaaaaaaggaaagaaggaaggaaaggaggaaggaa
ggagggaaagaaggaaggagaaagaaaaagggaaggagggacccacatag
ttcagaaagacggtgcactaacgctggaaagcagggtagtatggatccag
agagggacatctgagtacagggctgaccagggaagcttggagcatgccct
tttttgttaactgctgagcattgatgataatgtcttacccagcttttggc
ctgtgctatcccatctaccacactaccctggctttccagggccagcactg
gctcttgtgcacaggcaggtggcagcatgacctccaggacagaagcatga
cacttgctgaacctgtgaccgaccagggtgttgtgggtgtaagacaagaa
acaagggcaagtttcctctcttttcaccagccccgaaaaatgaaaaggtg
ggggcccactgtctacctt
gaattctctttagtcatttcagttagttggaagtcccacttcctctgaga
aatattccatgagatctggtggaaactattcataaagggaaagaaagccc
tgctaacttactggccagggaagtcagtcagcaaaagcaagaagagttct
ggggaactcctgtaagtttttcttttgatttttccaagatggggggaggg
tgtctcatcttacctccaactcctactgagccaaggatgacctgaaactc
ctgctccctttgctccatctcttcagtgctgggactgcaggcctgtgaca
ccatggctagtttacatcaggctgagctggccagggctttgtgctcgcta
ggcaagtagagcctgaccgtcctacaaccctagccctgcctcaatatttt
atggacttactttttaattataattttataggaaatggtgtgcatctctt
tgatcattgtaggaagcattgtgtggcatcggcccttggttctgcttcca
caggctccacccttgacggatggggatggtctccctgtcctcggttagca
tccttcgacatcactgtcagtcttttgggaagaggaaaccaacacacttg
tctctgtttgatttttgcctattactaatatcttcttttgaaatttgttt
tcggcggttgattagttcactggcccaggttttgctttcctccagccagc
attgacatctttgcttgccacgtcctgcgggtgaaaggccgcattcttcg
acacctctgtaatgtgacccacttgcaaattttggcattgaagagataca
gtcacacagagaatggtttgattaaaatatggaataaattaaccaggagg
ccttctgccaggttcccagcaagcattacgatcttcaggttactgtggat
cttactagtcagtagcttaagctatgtccatcaactacagcatagacata
gttctctaaagacttcttttacgtggttgtgagtatgtaacgcaacaggt
cctcagtgtggacatggcgcaaatgagccaggttcctgtgtgcgctccgg
aagcatcatctcacccggatctgggagttactgggggtgaaaacactcgg
tattggggtggggggaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_119180936_119181810
seq2: B6Ng01-077K11.b_189_1064

seq1  CTTGGGCTTGGGCTCAGACTGGATGAAAAGGAAAGGTGGGGGAAGCAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCTTGGGCTCAGACTGGATGAAAAGGAAAGGTGGGGGAAGCAGGC  50

seq1  TGAGCACCACTGTCCACCTCTCGCTGTGCCCTGGCCGTGGACACAGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACCACTGTCCACCTCTCGCTGTGCCCTGGCCGTGGACACAGTGTG  100

seq1  ACCAGCTCCTTCACAGCCCTGACACCATGGCTTCTCCCTCTGCCATGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTCCTTCACAGCCCTGACACCATGGCTTCTCCCTCTGCCATGATG  150

seq1  AACCATGTCCTCTCAAACTGGGAGTCCAATGTGTGGCAGTGAACCGTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGTCCTCTCAAACTGGGAGTCCAATGTGTGGCAGTGAACCGTGCC  200

seq1  ACCAGACAGAAAACCTGGTAAGGTCGGGCAGATACTGGAACCCCGGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACAGAAAACCTGGTAAGGTCGGGCAGATACTGGAACCCCGGCAAT  250

seq1  TCTCATAATTGAGAATGGTAGACAGTTAAATCTACTCCTGTCCAGATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAATTGAGAATGGTAGACAGTTAAATCTACTCCTGTCCAGATTCC  300

seq1  TGTCCTGTGCGTGACCACGACATCCCGTTGAGAGGACTGTGACAATCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGTGCGTGACCACGACATCCCGTTGAGAGGACTGTGACAATCAGT  350

seq1  CACAGAGGGGCAATGGCTGAAGCCCTTCTACGTGCAGATGAGGCATCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGGGCAATGGCTGAAGCCCTTCTACGTGCAGATGAGGCATCCCC  400

seq1  AACATCTCAGAGCAGGTCAATAGAAAAAAGGAAAGAAGGAAGGAAAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTCAGAGCAGGTCAATAGAAAAAAGGAAAGAAGGAAGGAAAGGAG  450

seq1  GAAGGAAGGAGGGAAAGAAGGAAGGAGAAAGAAAAAGGGAAGGAGGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGAGGGAAAGAAGGAAGGAGAAAGAAAAAGGGAAGGAGGGACC  500

seq1  CACATAGTTCAGAAAGACGGTGCACTAACGCTGGAAAGCAGGGTAGTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGTTCAGAAAGACGGTGCACTAACGCTGGAAAGCAGGGTAGTATG  550

seq1  GATCCAGAGAGGGACATCTGAGTACAGGGCTGACCAGGGAAGCTTGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGAGAGGGACATCTGAGTACAGGGCTGACCAGGGAAGCTTGGAGC  600

seq1  ATGCCCTTTTTTGTTAACTGCTGAGCATTGATGATAATGTCTTACCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTTTTTTGTTAACTGCTGAGCATTGATGATAATGTCTTACCCAGC  650

seq1  -TTTGGCCTGTGCTATCCCATCTACCACACTACCCTGGCTTCCCAGGGCC  699
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTTGGCCTGTGCTATCCCATCTACCACACTACCCTGGCTTTCCAGGGCC  700

seq1  AGCACTGGCTCTTGTGCACAGGCAGGTGGCAGCATGACCTCCAGGACAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGCTCTTGTGCACAGGCAGGTGGCAGCATGACCTCCAGGACAGA  750

seq1  AGCATGACACTTGCTGAACCTGTGACCGACCAGGG-GGTGTGGTTGTAAG  798
      ||||||||||||||||||||||||||||||||||| | ||||| ||||||
seq2  AGCATGACACTTGCTGAACCTGTGACCGACCAGGGTGTTGTGGGTGTAAG  800

seq1  ACAAGACAC-AGGGCCAGTTTCCTTCACTTTCCACCAGCCCCGAGAAACT  847
      |||||| || ||||| ||||||| || |||| |||||||||||| ||| |
seq2  ACAAGAAACAAGGGCAAGTTTCC-TCTCTTTTCACCAGCCCCGA-AAAAT  848

seq1  GAAAAGGTGGGGGCCACTTGTCTACCTT  875
      |||||||||||||||   ||||||||||
seq2  GAAAAGGTGGGGGCCCACTGTCTACCTT  876

seq1: chr14_119231427_119232531
seq2: B6Ng01-077K11.g_70_1187 (reverse)

seq1  GTTCCCCCCACCC--ATACCCAGTG-TCTCACACCCTGTAACT-CCAGAT  46
      |||||||||||||  ||||| |||| | |||| ||| |||||| ||||||
seq2  GTTCCCCCCACCCCAATACCGAGTGTTTTCACCCCCAGTAACTCCCAGAT  50

seq1  CAGGGTGAGCTGATGCTTCC-GAGCGC-CACAGG-ACCTGGCCTCATTTG  93
      | ||||||| |||||||||| |||||| |||||| |||||| ||||||||
seq2  CCGGGTGAGATGATGCTTCCGGAGCGCACACAGGAACCTGG-CTCATTTG  99

seq1  CG-CATGTCCACACTGA-GACCTG-TGCG-TACATACTCACAACAACGTA  139
      || |||||||||||||| |||||| |||| |||||||||||||| |||||
seq2  CGCCATGTCCACACTGAGGACCTGTTGCGTTACATACTCACAACCACGTA  149

seq1  AAAGAAGTCTTTAGAG-ACTATGTCTATGCTGTAGTTGATGGACATAGCC  188
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  AAAGAAGTCTTTAGAGAACTATGTCTATGCTGTAGTTGATGGACATAGCT  199

seq1  TAAGCTACTGACTAGTAAGATCCACAGTAACCTGAAGATCGTAATGCTTG  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTACTGACTAGTAAGATCCACAGTAACCTGAAGATCGTAATGCTTG  249

seq1  CTGGGAACCTGGCAGAAGGCCTCCTGGTTAATTTATTCCATATTTTAATC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAACCTGGCAGAAGGCCTCCTGGTTAATTTATTCCATATTTTAATC  299

seq1  AAACCATTCTCTGTGTGACTGTATCTCTTCAATGCCAAAATTTGCAAGTG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTCTCTGTGTGACTGTATCTCTTCAATGCCAAAATTTGCAAGTG  349

seq1  GGTCACATTACAGAGGTGTCGAAGAATGCGGCCTTTCACCCGCAGGACGT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACATTACAGAGGTGTCGAAGAATGCGGCCTTTCACCCGCAGGACGT  399

seq1  GGCAAGCAAAGATGTCAATGCTGGCTGGAGG-AAGCAAAACCTGGGCCAG  437
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGCAAGCAAAGATGTCAATGCTGGCTGGAGGAAAGCAAAACCTGGGCCAG  449

seq1  TGAACTAATCAACCGCCGAAAACAAATTTC-AAAGAAGATATTAGTAATA  486
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGAACTAATCAACCGCCGAAAACAAATTTCAAAAGAAGATATTAGTAATA  499

seq1  GGCAAAAATCAAACAGAGACAAGTGTGTTGGTTTCCTCTTCCCAAAAGAC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAATCAAACAGAGACAAGTGTGTTGGTTTCCTCTTCCCAAAAGAC  549

seq1  TGACAGTGATGTCGAAGGATGCTAACCGAGGACAGGGAGACCATCCCCAT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTGATGTCGAAGGATGCTAACCGAGGACAGGGAGACCATCCCCAT  599

seq1  CCGTCAAGGGTGGAGCCTGTGGAAGCAGAACCAAGGGCCGATGCCACACA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCAAGGGTGGAGCCTGTGGAAGCAGAACCAAGGGCCGATGCCACACA  649

seq1  ATGCTTCCTACAATGATCAAAGAGATGCACACCATTTCCTATAAAATTAT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCCTACAATGATCAAAGAGATGCACACCATTTCCTATAAAATTAT  699

seq1  AATTAAAAAGTAAGTCCATAAAATATTGAGGCAGGGCTAGGGTTGTAGGA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAAGTAAGTCCATAAAATATTGAGGCAGGGCTAGGGTTGTAGGA  749

seq1  CGGTCAGGCTCTACTTGCCTAGCGAGCACAAAGCCCTGGCCAGCTCAGCC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCAGGCTCTACTTGCCTAGCGAGCACAAAGCCCTGGCCAGCTCAGCC  799

seq1  TGATGTAAACTAGCCATGGTGTCACAGGCCTGCAGTCCCAGCACTGAAGA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTAAACTAGCCATGGTGTCACAGGCCTGCAGTCCCAGCACTGAAGA  849

seq1  GATGGAGCAAAGGGAGCAGGAGTTTCAGGTCATCCTTGGCTCAGTAGGAG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGCAAAGGGAGCAGGAGTTTCAGGTCATCCTTGGCTCAGTAGGAG  899

seq1  TTGGAGGTAAGATGAGACACCCTCCCCCCATCTTGGAAAAATCAAAAGAA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGTAAGATGAGACACCCTCCCCCCATCTTGGAAAAATCAAAAGAA  949

seq1  AAACTTACAGGAGTTCCCCAGAACTCTTCTTGCTTTTGCTGACTGACTTC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTACAGGAGTTCCCCAGAACTCTTCTTGCTTTTGCTGACTGACTTC  999

seq1  CCTGGCCAGTAAGTTAGCAGGGCTTTCTTTCCCTTTATGAATAGTTTCCA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCAGTAAGTTAGCAGGGCTTTCTTTCCCTTTATGAATAGTTTCCA  1049

seq1  CCAGATCTCATGGAATATTTCTCAGAGGAAGTGGGACTTCCAACTAACTG  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCTCATGGAATATTTCTCAGAGGAAGTGGGACTTCCAACTAACTG  1099

seq1  AAATGACTAAAGAGAATTC  1105
      |||||||||||||||||||
seq2  AAATGACTAAAGAGAATTC  1118