BAC Information

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BAC

Clone NameB6Ng01-077M15
Chromosome14 (Build37)
Map Location 33,228,187 - 33,365,830
singlet/doubletdoublet
Overlap geneChat, Slc18a3, LOC100040834, EG665618, Ercc6
Upstream geneSh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28, Galntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik
Downstream gene9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18, EG622657, Arhgap22, Mapk8, LOC100040079, LOC665681, Frmpd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077M15.bB6Ng01-077M15.g
ACCDH893672DH893673
length1,128858
definitionDH893672|Mus musculus domesticus DNA, BAC clone: B6Ng01-077M15, 5' end.DH893673|Mus musculus domesticus DNA, BAC clone: B6Ng01-077M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,364,688 - 33,365,830)(33,228,187 - 33,229,042)
sequence
gaattccttcacccactgatgcatcactgtcgttgggcagacaattatag
tggggcctagtccctcgaacctgcacccaaaagtccaagaagaaaacaca
atcatgaaagacagtagagaaagtaaccagcagccaacaacaaaaacctt
gcaaggttcaaaaaagaaaataacctatgaaaatttactgatgctttctt
taaggaaaaaagctatagtggggaaaatctgtatgaacccaaccatccct
tagtgcatgcaggaattaagaacaaacagtaaatggtacgcttggaagcc
aacatcaatagtaaagaagaaaataaaaataaaacaaaacacaacaaaaa
ccctcctccctcccttcttgtgtttctcaccagtcccgataacacacagt
gtatcctaaccaaagagcacaatagcagcttcactttgtatgaagatttc
ccaaatgccagagctttcagcccacggaatttcaatatgcctttactgct
ctagaaagcatgcatgacagacacagttcagaagctcgctggagcctcct
ctcactgacacgctgctgcctactccctaagcaatggcaacactatggag
gaacatcccagagattgccccctgcagggaaggaagctgagctgcagtgc
tcactgggtcactcagacagcgttgagcagcattactttatatataacta
agagggtaatatgacctaaatatgcagggacagacaagggagagttgaaa
tattccatagaacacaagccagcggccatggacaccacctgagtctgagt
gccactctacaatctcaggcatattaatttacatctctgaacttaagttt
ctcatcattaagtaaataatagtactgaatttacaggtactatgaattaa
cagctaacatctatgaacagtgtcatttggtaaataccaaaagtcttatt
gaataaaacatactatcacataccattaaaactgttaaagatatcttggg
gcctaggaaaaaacttataattaacttaaaaagaaaaaaagaaaaactct
ttagagaacactgcatttcttaacacgaaggagctgagcaggttaagcac
ctcacatgtcttcctagctccctgggag
gaattccctcaatatagaagcattttctgtggttctgaagtttgttttgt
tctgtgctggggatagtaccctgggatctatgcctgttaggcaagctctc
tatcattgaactatccacagcttttggtatttttcttgaattatttttgt
tgtctactctccaatttttctttctaagcaactattatttgggatactgc
tcacctgaactaagccaccttacctttcttatatttcacctctgttttgt
tagtgtttaaagtaggttacctcatattatctcccaatacttccattgac
attttctgctacactgtaccctagagctatctttatttcttgataatatt
ttagagtttcctgttcttatttatagaataaaaattttgtaaatttgtgg
ggtggtggatcataccaggaaacttggtagggttgagtgggttcagagac
cctagcacccaggcacccacatgagatggtagtcatctctctgctcctta
ctagattcctggcccagaacacatgatattccttcttgaaaaaggtattt
catctctggtctacccagaggaggtggtatgcacccatttttgatgatga
acagtcagtaaatggtatggataagcatggattgtcttttttatcaaggc
agaactacactctgtaagtctcctgaagaaagctccatgctcccagacaa
ttgcaactaagctaaagacaatctctaatgagctaagctggagttcccca
tccccctagccctgggcttctcagtccacagacccaactctgttcccaac
tccccacagctccagtggagtctgggatgtccaggggtttggaacccttg
gctctagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_33364688_33365830
seq2: B6Ng01-077M15.b_49_1176 (reverse)

seq1  CTCCCAGTGGAGCTAGGGGAAGACCATGGTGAGGTGCCTTCACCTGCCTT  50
      ||||||| |||||||  |||||| ||| |||||||| ||| ||||||   
seq2  CTCCCAG-GGAGCTA--GGAAGA-CAT-GTGAGGTG-CTTAACCTGC---  41

seq1  CCAGCTCCTTCGTGTTAGGAAATTGCAGTGATCTCTTAAGAGTTTTTCTT  100
       |||||||||||||||| |||| ||||||| ||||| ||||||||||| |
seq2  TCAGCTCCTTCGTGTTAAGAAA-TGCAGTGTTCTCTAAAGAGTTTTTC-T  89

seq1  TTTTTTCTTTTTAAGTTTATTATAAGTATTTTCTTAGGCCACAAGATATT  150
      ||||||||||||||||| ||||||||| ||||| |||||| ||||||| |
seq2  TTTTTTCTTTTTAAGTTAATTATAAGTTTTTTCCTAGGCCCCAAGATA-T  138

seq1  CTTTAAACAGTTTTAATGGTTATGTGATAGTATGTTTTATTCAATAAGAC  200
      |||| |||||||||||||| ||||||||||||||||||||||||||||| 
seq2  CTTT-AACAGTTTTAATGG-TATGTGATAGTATGTTTTATTCAATAAGA-  185

seq1  CTTTTGGTATTTACCAAATGACACTGTTCATAGATGTTAGCTGTTAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGTATTTACCAAATGACACTGTTCATAGATGTTAGCTGTTAATTC  235

seq1  ATAGTACCTGTAAATTCAGTACTATTATTTACTTAATGATGAGAAACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACCTGTAAATTCAGTACTATTATTTACTTAATGATGAGAAACTTA  285

seq1  AGTTCAGAGATGTAAATTAATATGCCTGAGATTGTAGAGTGGCACTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGAGATGTAAATTAATATGCCTGAGATTGTAGAGTGGCACTCAGA  335

seq1  CTCAGGTGGTGTCCATGGCCGCTGGCTTGTGTTCTATGGAATATTTCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTGGTGTCCATGGCCGCTGGCTTGTGTTCTATGGAATATTTCAAC  385

seq1  TCTCCCTTGTCTGTCCCTGCATATTTAGGTCATATTACCCTCTTAGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTGTCTGTCCCTGCATATTTAGGTCATATTACCCTCTTAGTTAT  435

seq1  ATATAAAGTAATGCTGCTCAACGCTGTCTGAGTGACCCAGTGAGCACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGTAATGCTGCTCAACGCTGTCTGAGTGACCCAGTGAGCACTGC  485

seq1  AGCTCAGCTTCCTTCCCTGCAGGGGGCAATCTCTGGGATGTTCCTCCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCTTCCTTCCCTGCAGGGGGCAATCTCTGGGATGTTCCTCCATA  535

seq1  GTGTTGCCATTGCTTAGGGAGTAGGCAGCAGCGTGTCAGTGAGAGGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCCATTGCTTAGGGAGTAGGCAGCAGCGTGTCAGTGAGAGGAGGC  585

seq1  TCCAGCGAGCTTCTGAACTGTGTCTGTCATGCATGCTTTCTAGAGCAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCGAGCTTCTGAACTGTGTCTGTCATGCATGCTTTCTAGAGCAGTA  635

seq1  AAGGCATATTGAAATTCCGTGGGCTGAAAGCTCTGGCATTTGGGAAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATATTGAAATTCCGTGGGCTGAAAGCTCTGGCATTTGGGAAATCT  685

seq1  TCATACAAAGTGAAGCTGCTATTGTGCTCTTTGGTTAGGATACACTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACAAAGTGAAGCTGCTATTGTGCTCTTTGGTTAGGATACACTGTGT  735

seq1  GTTATCGGGACTGGTGAGAAACACAAGAAGGGAGGGAGGAGGGTTTTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCGGGACTGGTGAGAAACACAAGAAGGGAGGGAGGAGGGTTTTTGT  785

seq1  TGTGTTTTGTTTTATTTTTATTTTCTTCTTTACTATTGATGTTGGCTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTGTTTTATTTTTATTTTCTTCTTTACTATTGATGTTGGCTTCC  835

seq1  AAGCGTACCATTTACTGTTTGTTCTTAATTCCTGCATGCACTAAGGGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTACCATTTACTGTTTGTTCTTAATTCCTGCATGCACTAAGGGATG  885

seq1  GTTGGGTTCATACAGATTTTCCCCACTATAGCTTTTTTCCTTAAAGAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTTCATACAGATTTTCCCCACTATAGCTTTTTTCCTTAAAGAAAG  935

seq1  CATCAGTAAATTTTCATAGGTTATTTTCTTTTTTGAACCTTGCAAGGTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTAAATTTTCATAGGTTATTTTCTTTTTTGAACCTTGCAAGGTTT  985

seq1  TTGTTGTTGGCTGCTGGTTACTTTCTCTACTGTCTTTCATGATTGTGTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGGCTGCTGGTTACTTTCTCTACTGTCTTTCATGATTGTGTTT  1035

seq1  TCTTCTTGGACTTTTGGGTGCAGGTTCGAGGGACTAGGCCCCACTATAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGGACTTTTGGGTGCAGGTTCGAGGGACTAGGCCCCACTATAAT  1085

seq1  TGTCTGCCCAACGACAGTGATGCATCAGTGGGTGAAGGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCCAACGACAGTGATGCATCAGTGGGTGAAGGAATTC  1128

seq1: chr14_33228187_33229042
seq2: B6Ng01-077M15.g_70_927

seq1  GAATTCCCTCAATATAGAAGCATTTTCTGTGGTTCTGAAGTTTGTTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCAATATAGAAGCATTTTCTGTGGTTCTGAAGTTTGTTTTGT  50

seq1  TCTGTGCTGGGGATAGTACCCTGGGATCTATGCCTGTTAGGCAAGCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTGGGGATAGTACCCTGGGATCTATGCCTGTTAGGCAAGCTCTC  100

seq1  TATCATTGAACTATCCACAGCTTTTGGTATTTTTCTTGAATTATTTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTGAACTATCCACAGCTTTTGGTATTTTTCTTGAATTATTTTTGT  150

seq1  TGTCTACTCTCCAATTTTTCTTTCTAAGCAACTATTATTTGGGATACTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACTCTCCAATTTTTCTTTCTAAGCAACTATTATTTGGGATACTGC  200

seq1  TCACCTGAACTAAGCCACCTTACCTTTCTTATATTTCACCTCTGTTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGAACTAAGCCACCTTACCTTTCTTATATTTCACCTCTGTTTTGT  250

seq1  TAGTGTTTAAAGTAGGTTACCTCATATTATCTCCCAATACTTCCATTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTTAAAGTAGGTTACCTCATATTATCTCCCAATACTTCCATTGAC  300

seq1  ATTTTCTGCTACACTGTACCCTAGAGCTATCTTTATTTCTTGATAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGCTACACTGTACCCTAGAGCTATCTTTATTTCTTGATAATATT  350

seq1  TTAGAGTTTCCTGTTCTTATTTATAGAATAAAAATTTTGTAAATTTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTTTCCTGTTCTTATTTATAGAATAAAAATTTTGTAAATTTGTGG  400

seq1  GGTGGTGGATCATACCAGGAAACTTGGTAGGGTTGAGTGGGTTCAGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGATCATACCAGGAAACTTGGTAGGGTTGAGTGGGTTCAGAGAC  450

seq1  CCTAGCACCCAGGCACCCACATGAGATGGTAGTCATCTCTCTGCTCCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACCCAGGCACCCACATGAGATGGTAGTCATCTCTCTGCTCCTTA  500

seq1  CTAGATTCCTGGCCCAGAACACATGATATTCCTTCTTGAAAAAGGTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTCCTGGCCCAGAACACATGATATTCCTTCTTGAAAAAGGTATTT  550

seq1  CATCTCTGGTCTACCCAGAGGAGGTGGTATGCACCCATTTTTGATGATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTGGTCTACCCAGAGGAGGTGGTATGCACCCATTTTTGATGATGA  600

seq1  ACAGTCAGTAAATGGTATGGATAAGCATGGATTGTCTTTTTTATCAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGTAAATGGTATGGATAAGCATGGATTGTCTTTTTTATCAAGGC  650

seq1  AGAACTACACTCTGTAAGTCTCCTGAAGAAAGCTCCATGCTCCCAGACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTACACTCTGTAAGTCTCCTGAAGAAAGCTCCATGCTCCCAGACAA  700

seq1  TTGCAACTAAGCTAAAGACAATCTCTAATGAGCTAAGCTGGAGTTCCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACTAAGCTAAAGACAATCTCTAATGAGCTAAGCTGGAGTTCCCCA  750

seq1  TCCCCCTAGCCCTGGGCTTCTCAGTCCACAGACCCAACTCTGTTCCCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTAGCCCTGGGCTTCTCAGTCCACAGACCCAACTCTGTTCCCAAC  800

seq1  TCCCCACAGC-CCAGTGGAGTCT-GGATGTCCAGGGGTTTGGAACCCCTG  848
      |||||||||| |||||||||||| ||||||||||||||||||||||| ||
seq2  TCCCCACAGCTCCAGTGGAGTCTGGGATGTCCAGGGGTTTGGAACCCTTG  850

seq1  GCTCTAGG  856
      ||||||||
seq2  GCTCTAGG  858