BAC Information

Click to search

BAC

Clone NameB6Ng01-077P08
Chromosome14 (Build37)
Map Location 37,867,009 - 37,868,161
singlet/doubletsinglet
Overlap geneLrrc21
Upstream geneLOC665933, 4930474N05Rik, Gcap14, LOC100040341, LOC670331, Rgr
Downstream geneLrrc22, Pcdh21, 2610528A11Rik, Ghitm, LOC382871, LOC382872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077P08.bB6Ng01-077P08.g
ACCDH893793DH893794
length1,1411,133
definitionDH893793|Mus musculus domesticus DNA, BAC clone: B6Ng01-077P08, 5' end.DH893794|Mus musculus domesticus DNA, BAC clone: B6Ng01-077P08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagaggaccaagtattctgagacagaaaaatgaagccagcaagcg
ggtgacttaagaagtctagtattcagtcctgcctgtcatcttgagaagga
tcttacaggatggggttggagaagagaaaacaaataaaatttccaaaacc
tctgcaagatccagcactaggaccctccctcgtgtatgacgcttgaggaa
gggataccgttcctctcttgtagtgattccttttgttttcagtgtgggtg
gtagtgcctcaaaggttaccaactgacatcctagggttctgcgaccgggt
gcccatgaggcattaagggaaagcaggtgtttgcctatgctcatgagcat
agatgggcacctttaatgtctccttgtaatgtcagaatcttcccagctcc
tctgtgaacacgtacgtgcctgtaagtgccagaaattgacagttttcaga
aaggttctgtcccctcagcagtcagagatgggcaagcctgggctaatttt
caccagtattccaggtggaaagctttatttccttttgtgactgacgatct
gagatcggaatacaggtgtcaggccctgaaacatggactctttctaatgc
ctccacaaccttcagaaggcctcgcttcatgttactcttctttttcagag
actatcgtaggggacaatttttagaggcccttatttagaggccagagttc
tgtttctatttttttcctgagcctagcaccccaagcacacagatttatta
cccctggcctggttgaaatggagttctttgcaagcagccagtcactagtc
acttgcctctgggcagctgcccatctgccttatctttctgtgccctagct
tcttctggcctggggttgatgctatagagggattctctccctcccctcaa
gactgggtgattcatgcatcagtaagctgctgagtgctagggctggggct
ccctccctaatccccagcctgtgtttatcccatggccttggatgggggtt
gctggtgatgagcagtgggtagccgttgacttactggacagcagaaagag
cacttctggacaggcccctgcctgggtccaaaggagcgaagtcatgtggg
tgccctgggcatgtcctgatcttcgcacttggggacctcac
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
atcagcatccttaatcatcagggaaatgcaaattaaaacagccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggttatagc
agatgctgtcgaggatgtggagaaagaggaacactccttcattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggatatagtactactggagaatcctgcaatacctctcctgggc
atatatccagaagatgttccaactgataagaaagacacatgctccactat
gttcacagcagccatatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggattcagaaaatatggtacatttacacaatg
gagtactactcagatattaaaaagaatgaatttatgaaattcctaggcaa
atggatagacctgaagggcatcatcctgagtgaggtaacccaatcacaaa
agaattcacatgatatgtactcactgataagtggatattagcccagaaac
ttagaatacccaagatacaaagcacatgaaactcaagaagaacgaagacc
aaagtgtggacactttgccccttcttagaattgggaacaaaacacccatg
gaaggagtaacagagacaaagtttggagctgagacaaaaggatggatcat
ctagagaccgccatatccagggatccaccccataatcagccaccaaacgc
agacaccattgcatacacttgcaagaatttgctgaaaggaccctgatata
gctgtctcttgtgagactatgccggggcctagtaaacacagaagtggatg
ctcacagtcagctattggatggatcacagggcccaaatggagagctagag
aaagtatccatgagctaaaggtatctgcaccctatagtgacacatatgac
taaccagtacccctgagcctcatgtctctagtgcatagtatcagaaaaat
gctagcgcatcaatggaaagggaggcccatgtctgcaactttatgctctc
attaaaggaatgccaggccagaatgggatgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_37867009_37868161
seq2: B6Ng01-077P08.b_44_1184

seq1  GAATTCAGAGGACCAAGTATTCTGAGACAGAAAAATGAAGCCAGCAAGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGACCAAGTATTCTGAGACAGAAAAATGAAGCCAGCAAGCG  50

seq1  GGTGACTTAAGAAGTCTAGTATTCAGTCCTGCCTGTCATCTTGAGAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTTAAGAAGTCTAGTATTCAGTCCTGCCTGTCATCTTGAGAAGGA  100

seq1  TCTTACAGGATGGGGTTGGAGAAGAGAAAACAAATAAAATTTCCAAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAGGATGGGGTTGGAGAAGAGAAAACAAATAAAATTTCCAAAACC  150

seq1  TCTGCAAGATCCAGCACTAGGACCCTCCCTCGTGTATGACGCTTGAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAGATCCAGCACTAGGACCCTCCCTCGTGTATGACGCTTGAGGAA  200

seq1  GGGATACCGTTCCTCTCTTGTAGTGATTCCTTTTGTTTTCAGTGTGGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATACCGTTCCTCTCTTGTAGTGATTCCTTTTGTTTTCAGTGTGGGTG  250

seq1  GTAGTGCCTCAAAGGTTACCAACTGACATCCTAGGGTTCTGCGACCGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGCCTCAAAGGTTACCAACTGACATCCTAGGGTTCTGCGACCGGGT  300

seq1  GCCCATGAGGCATTAAGGGAAAGCAGGTGTTTGCCTATGCTCATGAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGAGGCATTAAGGGAAAGCAGGTGTTTGCCTATGCTCATGAGCAT  350

seq1  AGATGGGCACCTTTAATGTCTCCTTGTAATGTCAGAATCTTCCCAGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGCACCTTTAATGTCTCCTTGTAATGTCAGAATCTTCCCAGCTCC  400

seq1  TCTGTGAACACGTACGTGCCTGTAAGTGCCAGAAATTGACAGTTTTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAACACGTACGTGCCTGTAAGTGCCAGAAATTGACAGTTTTCAGA  450

seq1  AAGGTTCTGTCCCCTCAGCAGTCAGAGATGGGCAAGCCTGGGCTAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCTGTCCCCTCAGCAGTCAGAGATGGGCAAGCCTGGGCTAATTTT  500

seq1  CACCAGTATTCCAGGTGGAAAGCTTTATTTCCTTTTGTGACTGACGATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTATTCCAGGTGGAAAGCTTTATTTCCTTTTGTGACTGACGATCT  550

seq1  GAGATCGGAATACAGGTGTCAGGCCCTGAAACATGGACTCTTTCTAATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCGGAATACAGGTGTCAGGCCCTGAAACATGGACTCTTTCTAATGC  600

seq1  CTCCACAACCTTCAGAAGGCCTCGCTTCATGTTACTCTTCTTTTTCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAACCTTCAGAAGGCCTCGCTTCATGTTACTCTTCTTTTTCAGAG  650

seq1  ACTATCGTAGGGGACAATTTTTAGAGGCCCTTATTTAGAGGCCAGAGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCGTAGGGGACAATTTTTAGAGGCCCTTATTTAGAGGCCAGAGTTC  700

seq1  TGTTTCTATTTTTTTCCTGAGCCTAGCACCCCAAGCACACAGATTTATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTATTTTTTTCCTGAGCCTAGCACCCCAAGCACACAGATTTATTA  750

seq1  CCCCTGGCCTGGTTGAAATGGAGTTCTTTGCAAGCAGCCAGTCACTAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGCCTGGTTGAAATGGAGTTCTTTGCAAGCAGCCAGTCACTAGTC  800

seq1  ACTTGCCTCTGGGCAGCTGCCCATCTGCCTTATCTTTCTGTGCCCTAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTCTGGGCAGCTGCCCATCTGCCTTATCTTTCTGTGCCCTAGCT  850

seq1  TCTTCTGGCCTGGGGTTGATGCTATAGAGGGATTCTCTCCCTCCCCTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGCCTGGGGTTGATGCTATAGAGGGATTCTCTCCCTCCCCTCAA  900

seq1  GACTGGGTGATTCAGGCATCAGTAAGCTGCTGAGTGCTAGGGCTGGGGCT  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GACTGGGTGATTCATGCATCAGTAAGCTGCTGAGTGCTAGGGCTGGGGCT  950

seq1  CCCTCCCTAATCCCCAGCCTGTGTTTATCCCATGGCCTTGGATGGGGGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTAATCCCCAGCCTGTGTTTATCCCATGGCCTTGGATGGGGGTT  1000

seq1  GCTGAGTGATGAGCAAGTGGGTAGCCGTTGGACTTACTGGACAAGCAGGA  1050
      |||| ||||||||| |||||||||||||| |||||||||||| |||| ||
seq2  GCTG-GTGATGAGC-AGTGGGTAGCCGTT-GACTTACTGGAC-AGCA-GA  1045

seq1  CAGAGCACCTCTGGGACAGGCCCCTGCCTGGGCCCAAGAGGAGCCAGAAG  1100
       ||||||| ||| ||||||||||||||||||| |||| ||||||  ||||
seq2  AAGAGCACTTCT-GGACAGGCCCCTGCCTGGGTCCAA-AGGAGC--GAAG  1091

seq1  TCATGTGGGTGGCCCTGGGCATGCTCTGGCTCCTCGCACTTGGGGGACCT  1150
      |||||||||| |||||||||||| ||  | || |||||||| ||||||||
seq2  TCATGTGGGT-GCCCTGGGCATG-TCCTGATCTTCGCACTT-GGGGACCT  1138

seq1  CAC  1153
      |||
seq2  CAC  1141