BAC Information

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BAC

Clone NameB6Ng01-078A13
Chromosome14 (Build37)
Map Location 43,235,875 - 43,237,037
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031
Downstream geneEG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078A13.bB6Ng01-078A13.g
ACCDH893849DH893850
length1,143805
definitionDH893849|Mus musculus domesticus DNA, BAC clone: B6Ng01-078A13, 5' end.DH893850|Mus musculus domesticus DNA, BAC clone: B6Ng01-078A13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaccatcattaaatcacaacatgagaagacaatgttggatatgga
aaaaatgaagcagtcaataagtgattccattgacaagtacaaggaattca
tagaagataatgattcctacaggtgagtcccagacacagctgagacccag
cactaggcagggaatgcttgtggccttctaggactttgtacaaaagtgag
agctctagttctatactctctgtttcttaataggagccctcccttgaggc
atgggtcttggatttgtacctcttagactcaggtttcctaagtgtgaata
ttgtccaagaccctccagtctttattcttccaaattcaggatcttctgca
tagaaatcatttccaccatgctgggaaactcaagcaaccctgaacttcta
gggttctgacagcagattacaagatctgggatccatgacaaaaatggaaa
gagtttataccttttgggtcttctctctccctaagagggcattgccctct
ccctactgatggttttctgatactacacacatatgagcaaccatgaggaa
gttttcctcttctgtgatgtatatggaacactcttggtgtagggttatca
gaaatattttgagtcttcttacatgtggctggtctctggatttgacctgc
ctctatttggtacttatggatatacagtggactctagtcttgggctgtct
ggggatcagagcccttgcagggatcataatatttggaagagtggcaggca
aatcaaaggtagctgggaatcaacatttatgttttatttgtttgtggttc
agcatcaggcacacccacctcctgaaagaatgcaatcaattgaaggaaaa
agtaaggatgttgctgaatgagaacagaaagctgctggtagagcagctga
ccaggaggcatcctttggtgaagaaaagagttctgtgatgagaccagcag
acatacatcccaagtgcaaagcagcagcagtagatgatgtgtatcagagc
acattgcctcatgctacatacatatagacaatcattgtacagtccaccac
ttattcaggcactcacctctgtctctctcagtgttaattagtgatcatct
acaagctttctgggagggtagcttttcagaactgccatgttta
gaattcaagaagttactctccagagatcctaataaccctattaaagaatg
gggtacagagctaaacagaaaattctcaactgatgaatcttgaatggctg
agatgtacttaagaaatgttcaacatctttagtcatcagggaaatgcaaa
tcaaattgaccctaagtttccacttcacagcactcagatgggacaagaac
aaaactcagctgacaggtgattctggcaagaatgtgaagaaagaagaaca
tccctccattcctgctgggactgcaagttggaaaaaccactttggagatc
aatctggcaattcttgagaaagttggaaatggttctacctcaagtacagg
tataccaccatggtacatatacccaaaagattctccaatgtattaaaaag
acacatgcaccactatgttcatagcagccttatttataatgaccagactc
tgaaaacaacccagatgtccctcacagaagaatagatacagaaaatattg
tacagtgtacaggagtactactcagcctttaaaaacattacttcatgaaa
ttcaaaggccaatgtttggaagttgaaatatcatcatgagtgtggtatcc
tagtcacaaaaggatacacatggtatgtagttattgataagtggaaattg
gtcaaaaaatgcatggaatgcccacaatacaactaacagaccacgggaaa
ccagagaagaaggaagatcacaccagagtgtgaatgctacagtttctact
cagaaagggggaagcaaagaatgtttggaagtaggaggagagaaaggatc
tggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_43235875_43237037
seq2: B6Ng01-078A13.b_49_1191

seq1  GAATTCACCATCATTAAATCACAACATGAGAAGACAATGTTGGATATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATCATTAAATCACAACATGAGAAGACAATGTTGGATATGGA  50

seq1  AAAAATGAAGCAGTCAATAAGTGATTCCATTGACAAGTACAAGGAATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAAGCAGTCAATAAGTGATTCCATTGACAAGTACAAGGAATTCA  100

seq1  TAGAAGATAATGATTCCTACAGGTGAGTCCCAGACACAGCTGAGACCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGATAATGATTCCTACAGGTGAGTCCCAGACACAGCTGAGACCCAG  150

seq1  CACTAGGCAGGGAATGCTTGTGGCCTTCTAGGACTTTGTACAAAAGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGCAGGGAATGCTTGTGGCCTTCTAGGACTTTGTACAAAAGTGAG  200

seq1  AGCTCTAGTTCTATACTCTCTGTTTCTTAATAGGAGCCCTCCCTTGAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTAGTTCTATACTCTCTGTTTCTTAATAGGAGCCCTCCCTTGAGGC  250

seq1  ATGGGTCTTGGATTTGTACCTCTTAGACTCAGGTTTCCTAAGTGTGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCTTGGATTTGTACCTCTTAGACTCAGGTTTCCTAAGTGTGAATA  300

seq1  TTGTCCAAGACCCTCCAGTCTTTATTCTTCCAAATTCAGGATCTTCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCAAGACCCTCCAGTCTTTATTCTTCCAAATTCAGGATCTTCTGCA  350

seq1  TAGAAATCATTTCCACCATGCTGGGAAACTCAAGCAACCCTGAACTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATCATTTCCACCATGCTGGGAAACTCAAGCAACCCTGAACTTCTA  400

seq1  GGGTTCTGACAGCAGATTACAAGATCTGGGATCCATGACAAAAATGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGACAGCAGATTACAAGATCTGGGATCCATGACAAAAATGGAAA  450

seq1  GAGTTTATACCTTTTGGGTCTTCTCTCTCCCTAAGAGGGCATTGCCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTATACCTTTTGGGTCTTCTCTCTCCCTAAGAGGGCATTGCCCTCT  500

seq1  CCCTACTGATGGTTTTCTGATACTACACACATATGAGCAACCATGAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTGATGGTTTTCTGATACTACACACATATGAGCAACCATGAGGAA  550

seq1  GTTTTCCTCTTCTGTGATGTATATGGAACACTCTTGGTGTAGGGTTATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTCTTCTGTGATGTATATGGAACACTCTTGGTGTAGGGTTATCA  600

seq1  GAAATATTTTGAGTCTTCTTACATGTGGCTGGTCTCTGGATTTGACCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTTTGAGTCTTCTTACATGTGGCTGGTCTCTGGATTTGACCTGC  650

seq1  CTCTATTTGGTACTTATGGATATACAGTGGACTCTAGTCTTGGGCTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTGGTACTTATGGATATACAGTGGACTCTAGTCTTGGGCTGTCT  700

seq1  GGGGATCAGAGCCCTTGCAGGGATCATAATATTTGGAAGAGTGGCAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATCAGAGCCCTTGCAGGGATCATAATATTTGGAAGAGTGGCAGGCA  750

seq1  AATCAAAGGTAGCTGGGAATCAACATTTATGTTTTATTTGTTTGTGGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGGTAGCTGGGAATCAACATTTATGTTTTATTTGTTTGTGGTTC  800

seq1  AGCATCAGGCACACCCACCTCCTGAAAGAATGCAATCAATTGAAGGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAGGCACACCCACCTCCTGAAAGAATGCAATCAATTGAAGGAAAA  850

seq1  AGTAAGGATGTTGCTGAATGAGAACAGAAAGCTGCTGGTAGAGCAGGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGTAAGGATGTTGCTGAATGAGAACAGAAAGCTGCTGGTAGAGCA-GCTG  899

seq1  ACCAGGAGGCATCCTTTGGTGAAGAAAAGAGTTCTGTGATGAGACCAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAGGCATCCTTTGGTGAAGAAAAGAGTTCTGTGATGAGACCAGCA  949

seq1  AGAACATACATCCCAAGTGCAAAGCAGCAGCAGGTAGGATGATGTGTATC  1000
         ||||||||||||||||||||||||||||| ||| |||||||||||||
seq2  --GACATACATCCCAAGTGCAAAGCAGCAGCA-GTA-GATGATGTGTATC  995

seq1  AGAGGCACATTGCCCTCATGGCTAACCATACATATAGACAATCCATTGTA  1050
      ||| |||||||| |||||| ||||  |||||||||||||||| |||||| 
seq2  AGA-GCACATTG-CCTCAT-GCTA--CATACATATAGACAAT-CATTGT-  1038

seq1  ACAGTCCACCAACTTATCCAGGCACTCACCTCTGTCTCCTCCAAGTGTTT  1100
      |||||||||| |||||| ||||||||||||||||||| |||  |||||| 
seq2  ACAGTCCACC-ACTTATTCAGGCACTCACCTCTGTCT-CTCTCAGTGTTA  1086

seq1  ATTTAGGTGATCATCTACAAGGCTTTCTGTGGAGGTAGCCTTTTTCAAGA  1150
      |||   |||||||||||||| |||||||| |  ||||||  ||||||   
seq2  ATT--AGTGATCATCTACAA-GCTTTCTGGGAGGGTAGC--TTTTCA--G  1129

seq1  AACTG-CATGTTTA  1163
      ||||| ||||||||
seq2  AACTGCCATGTTTA  1143