BAC Information

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BAC

Clone NameB6Ng01-078O12
Chromosome14 (Build37)
Map Location 19,796,818 - 19,941,256
singlet/doubletdoublet
Overlap geneLOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
Downstream geneEG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078O12.bB6Ng01-078O12.g
ACCDH894480DH894481
length1,098860
definitionDH894480|Mus musculus domesticus DNA, BAC clone: B6Ng01-078O12, 5' end.DH894481|Mus musculus domesticus DNA, BAC clone: B6Ng01-078O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,796,818 - 19,797,921)(19,940,400 - 19,941,256)
sequence
gaattccaacagcttcctgacagcacatgtaaggatatgttttccatccc
aaagttgaccaactccagcactgatacctggagctgtgctgactcctcct
ttgttattcttggtctgcagggtgagtttccaactgcagcagccaacctt
ctacctgacccttccctcactaggaataaatgaaggcttcatggctcaat
ccagtccctctacttgtccaagaacaagcagatatggtctgggagagtag
gacagaatctgtctttctagtcctgaatcatgagcccctctttggtcttt
tctactggtgatctggggccacattctctcccttcaagggtcctccagct
gtcagactataacttcatgtgatggctggtttttatatcaacttgacata
agctagagtaatttgggagtagggagcctcagttgagaaaatgtctccag
aagaccaggctgtggacaagcttgttgggcattttctgaattagttactg
atggggtggtagccctctgtttgtggtaccactccagggatggtggtcat
tggttctataagaaagcagaatgtgagcaagccagtaagaagtactgttc
catggactatgtaccagctcctgcctccaggtttctgccctgtttgagct
ctgtcttgatttcctttgatgatgaacagcaatgtagaagtgaaaaccaa
ataaatccttttcttccccaacttatttttggtcacagtattttatcaca
gcaatagtaatgctaactaataccccacagaagcccaggatgtcaagaag
agcagcacgtggcccaaggactttcccagtcaatggctatttttgtatct
tgtttttctttatacatttatttaaatttctttaggattttgacccattg
cccctgaattttaagtctatttgtcatattattgtctctttttgtgtgtg
acatgttacagctttctattcccaggttgcctgttgtcttttgataattt
tctctttccctgtgcagatgtttcaacttcaacaagctaattcacaaggt
tttccttgattaaatttatatatttcatgaaatgtttgctatatccca
gaattcaatgattacaacaccggaaaagaaagacttttgaagataaccta
agaccaaagaggactgcaactggataaattatgcacaatgggaggaaagc
ctgaaggaacttcaaaggactcaatccacataggagcgtgctttagatgt
ggactaccgatatattacactctggctgaaatatgcagaaatggagatga
agaacctccatgtcaagcatgcctgaaacatcagggacggtgccataaca
actctgccacgagtcaaccagttctggtacaagtacacatgcatggagga
gatgttgggcaacgttgctggtgctcggcaggtgtttgagtgctgaatgg
aagcgcagcctgaggagcaggcctggatttcctacatcaacttggagctg
agatacaaagtagtggattgggcccacaccatttattaatgctttgtgct
cgtgcaccctgctgtgaagaactggttcaagtattctcggtttgaaaaga
agcatgtttcatttgctcacgcgcagaaaatctatgtgagaggggtggag
gtttttggggtcgagcatatggaccaacacctctatgtggcttttgctaa
atttaaggaaaatcagaaagaatttgaaagggtacaagttatctacagat
atgccctggtttaggatttccaaacaggagacccaagaactcttgaaaaa
ctacatcatctttgagaagaagtttggtgaccggagattccagtaggaag
aagtgaaggctaatccacacaattatgacgcatgattttcattatttatt
gcttggtgggaagtgaggcagaagctgacactgtgcaggaagtctatgag
agagtcatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_19796818_19797921
seq2: B6Ng01-078O12.b_45_1142

seq1  GAATTCCAACAGCTTCCTGACAGCACATGTAAGGATATGTTTTCCATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACAGCTTCCTGACAGCACATGTAAGGATATGTTTTCCATCCC  50

seq1  AAAGTTGACCAACTCCAGCACTGATACCTGGAGCTGTGCTGACTCCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGACCAACTCCAGCACTGATACCTGGAGCTGTGCTGACTCCTCCT  100

seq1  TTGTTATTCTTGGTCTGCAGGGTGAGTTTCCAACTGCAGCAGCCAACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTCTTGGTCTGCAGGGTGAGTTTCCAACTGCAGCAGCCAACCTT  150

seq1  CTACCTGACCCTTCCCTCACTAGGAATAAATGAAGGCTTCATGGCTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGACCCTTCCCTCACTAGGAATAAATGAAGGCTTCATGGCTCAAT  200

seq1  CCAGTCCCTCTACTTGTCCAAGAACAAGCAGATATGGTCTGGGAGAGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCCTCTACTTGTCCAAGAACAAGCAGATATGGTCTGGGAGAGTAG  250

seq1  GACAGAATCTGTCTTTCTAGTCCTGAATCATGAGCCCCTCTTTGGTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAATCTGTCTTTCTAGTCCTGAATCATGAGCCCCTCTTTGGTCTTT  300

seq1  TCTACTGGTGATCTGGGGCCACATTCTCTCCCTTCAAGGGTCCTCCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGGTGATCTGGGGCCACATTCTCTCCCTTCAAGGGTCCTCCAGCT  350

seq1  GTCAGACTATAACTTCATGTGATGGCTGGTTTTTATATCAACTTGACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACTATAACTTCATGTGATGGCTGGTTTTTATATCAACTTGACATA  400

seq1  AGCTAGAGTAATTTGGGAGTAGGGAGCCTCAGTTGAGAAAATGTCTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAGTAATTTGGGAGTAGGGAGCCTCAGTTGAGAAAATGTCTCCAG  450

seq1  AAGACCAGGCTGTGGACAAGCTTGTTGGGCATTTTCTGAATTAGTTACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAGGCTGTGGACAAGCTTGTTGGGCATTTTCTGAATTAGTTACTG  500

seq1  ATGGGGTGGTAGCCCTCTGTTTGTGGTACCACTCCAGGGATGGTGGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTGGTAGCCCTCTGTTTGTGGTACCACTCCAGGGATGGTGGTCAT  550

seq1  TGGTTCTATAAGAAAGCAGAATGTGAGCAAGCCAGTAAGAAGTACTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTATAAGAAAGCAGAATGTGAGCAAGCCAGTAAGAAGTACTGTTC  600

seq1  CATGGACTATGTACCAGCTCCTGCCTCCAGGTTTCTGCCCTGTTTGAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACTATGTACCAGCTCCTGCCTCCAGGTTTCTGCCCTGTTTGAGCT  650

seq1  CTGTCTTGATTTCCTTTGATGATGAACAGCAATGTAGAAGTGAAAACCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTGATTTCCTTTGATGATGAACAGCAATGTAGAAGTGAAAACCAA  700

seq1  ATAAATCC-TTTCTTCCCCAACTTATTTTTGGTCACAGTATTTTATCACA  749
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCCTTTTCTTCCCCAACTTATTTTTGGTCACAGTATTTTATCACA  750

seq1  GCAATAGTAATGCTAACTAATACCCCACAGAAGCCCAGGATGTCAAGAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGTAATGCTAACTAATACCCCACAGAAGCCCAGGATGTCAAGAAG  800

seq1  AGCAGCAGGTGGCCCAAGGACTTTCCCAGTCAATGGCTATTTTTGTATCC  849
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  AGCAGCACGTGGCCCAAGGACTTTCCCAGTCAATGGCTATTTTTGTAT-C  849

seq1  TTGTTTTTCTTTATACATTTATTTAAATTTCTTTAGGATTTTGACCCATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCTTTATACATTTATTTAAATTTCTTTAGGATTTTGACCCATT  899

seq1  GCCCCTGAATTTTAAGTCTATTTGTCATATTTATTGTCTCTTTTTGTGTG  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCCCCTGAATTTTAAGTCTATTTGTCATA-TTATTGTCTCTTTTTGTGTG  948

seq1  TGACATGTTACAGCTTTCTA-TCCCAGGTTGCCTGTTGTCTTTTGATAAT  998
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGACATGTTACAGCTTTCTATTCCCAGGTTGCCTGTTGTCTTTTGATAAT  998

seq1  TTTCTCTTTCCCCTGTGCAGATGTATCAACTTCTACAAGCTTAAATTCAC  1048
      ||||||||| |||||||||||||| |||||||| |||||||  |||||| 
seq2  TTTCTCTTT-CCCTGTGCAGATGTTTCAACTTCAACAAGCT--AATTCA-  1044

seq1  CAGGGTTCTCCTTTGATTACATTTATATATTTCATTGAAAATGTTTGCTA  1098
      || |||| ||| ||||||| |||||||||||||||   ||||||||||||
seq2  CAAGGTTTTCC-TTGATTAAATTTATATATTTCAT--GAAATGTTTGCTA  1091

seq1  TA-CCCA  1104
      || ||||
seq2  TATCCCA  1098

seq1: chr14_19940400_19941256
seq2: B6Ng01-078O12.g_73_932 (reverse)

seq1  TAATGACTCTCTCATAGACTTCCTGCACAGTGTCAGCTTCTGCCTCACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACTCTCTCATAGACTTCCTGCACAGTGTCAGCTTCTGCCTCACTT  50

seq1  CCCACCAAGC-ATAAATAATG-AAATCATGCGTCATAATTGTGTGGATTA  98
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  CCCACCAAGCAATAAATAATGAAAATCATGCGTCATAATTGTGTGGATTA  100

seq1  GCCTTCACTTCTTCCTACTGGAATCTCCGGTCACCAAACTTCTTCTCAAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCACTTCTTCCTACTGGAATCTCCGGTCACCAAACTTCTTCTCAAA  150

seq1  GATGATGTAGTTTTTCAAGAGTTCTTGGGTCTCCTGTTTGGAAATCCT-A  197
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GATGATGTAGTTTTTCAAGAGTTCTTGGGTCTCCTGTTTGGAAATCCTAA  200

seq1  ACCAGGGCATATCTGTAGATAACTTGTACCCTTTCAAATTCTTTCTGATT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGCATATCTGTAGATAACTTGTACCCTTTCAAATTCTTTCTGATT  250

seq1  TTCCTTAAATTTAGCAAAAGCCACATAGAGGTGTTGGTCCATATGCTCGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAATTTAGCAAAAGCCACATAGAGGTGTTGGTCCATATGCTCGA  300

seq1  CCCCAAAAACCTCCACCCCTCTCACATAGATTTTCTGCGCGTGAGCAAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAAACCTCCACCCCTCTCACATAGATTTTCTGCGCGTGAGCAAAT  350

seq1  GAAACATGCTTCTTTTCAAACCGAGAATACTTGAACCAGTTCTTCACAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATGCTTCTTTTCAAACCGAGAATACTTGAACCAGTTCTTCACAGC  400

seq1  AGGGTGCACGAGCACAAAGCATTAATAAATGGTGTGGGCCCAATCCACTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCACGAGCACAAAGCATTAATAAATGGTGTGGGCCCAATCCACTA  450

seq1  CTTTGTATCTCAGCTCCAAGTTGATGTAGGAAATCCAGGCCTGCTCCTCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTATCTCAGCTCCAAGTTGATGTAGGAAATCCAGGCCTGCTCCTCA  500

seq1  GGCTGCGCTTCCATTCAGCACTCAAACACCTGCCGAGCACCAGCAACGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCGCTTCCATTCAGCACTCAAACACCTGCCGAGCACCAGCAACGTT  550

seq1  GCCCAACATCTCCTCCATGCATGTGTACTTGTACCAGAACTGGTTGACTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACATCTCCTCCATGCATGTGTACTTGTACCAGAACTGGTTGACTC  600

seq1  GTGGCAGAGTTGTTATGGCACCGTCCCTGATGTTTCAGGCATGCTTGACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGAGTTGTTATGGCACCGTCCCTGATGTTTCAGGCATGCTTGACA  650

seq1  TGGAGGTTCTTCATCTCCATTTCTGCATATTTCAGCCAGAGTGTAATATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTTCTTCATCTCCATTTCTGCATATTTCAGCCAGAGTGTAATATA  700

seq1  TCGGTAGTCCACATCTAAAGCACGCTCCTATGTGGATTGAGTCCTTTGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTAGTCCACATCTAAAGCACGCTCCTATGTGGATTGAGTCCTTTGAA  750

seq1  GTTCCTTCAGGCTTTCCTCCCATTGTGCATAATTTATCCAGTTGCAGTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTCAGGCTTTCCTCCCATTGTGCATAATTTATCCAGTTGCAGTCC  800

seq1  TCTTTGGTCTTAGGTTATCTTCAAAAGTCTTTCTTTTCCGGTGTTGTAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGTCTTAGGTTATCTTCAAAAGTCTTTCTTTTCCGGTGTTGTAAT  850

seq1  CATTGAATTC  857
      ||||||||||
seq2  CATTGAATTC  860