BAC Information

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BAC

Clone NameB6Ng01-079E17
Chromosome14 (Build37)
Map Location 89,833,825 - 89,834,929
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079E17.bB6Ng01-079E17.g
ACCDH894742DH894743
length1,0961,091
definitionDH894742|Mus musculus domesticus DNA, BAC clone: B6Ng01-079E17, 5' end.DH894743|Mus musculus domesticus DNA, BAC clone: B6Ng01-079E17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttgaaaagtacaaagaaacaaatggcagagtagaaacagcag
gtaatagaaaaatacaagctagcaagtaatgatgagaaaatctaatcctt
ccataaagtcaattaagatttgagaaaaacaattattttgtctaacaatt
acacagccagaactctggaattcatacctacctgtacagacatacagatt
gcttttactcagatggaaattgatcatttgtttgccttctcccaattgtg
acataaacctatccagatttgattatgccaaaatttagttttatctatta
acagaaccgctcctcattatgtgcctcctttatttttatcaagatttatt
aaataattaaccaccagtttgtagcagtagttgggtaaccgatctggctc
ccagcctgtcacacacacgtgcactcgcccaggagctctgtggattcacg
aataaaagacacagaaacacatcaggtaattttaacatgatgtgactagc
tcaaaatctggacacttcgaaccattcctctgctctcaaaacctttcctt
cagtactcctgatactcctaaaccttccgctgctatcccaggcccagtca
gggaagtggtcagtggccacgtacccaaattcatacatggctggttggct
ttctcttttgcagctcttaagtctcatctatcacacacacacacacacac
acacacacacacacacacacaggaactagccgagcaaatcccacctcact
gtatctgcccagccattggccattggctctttattgattgatcaaaaacc
aattgggaacaaggaccaccaacatttagacatgcagattcctgagtttg
gtggccaagttaatccaaaacattggaagcaatccccaacaacagttcat
tggttttcaaacctgagtcttacattttaatacattgcgagttttgtttt
aggatgatttgtttctttgtttttatgtggatacccctgtttcacactta
gctattatagtagaatctgagaataggaaggtacattattttttccttgt
cagtttttcatataactgggaactctcaattattcaatggacatca
gaattctcatattggttccctgaactgtagagtgagggctattatggttg
gaaaggccaaatggaagcctttagagttgcctctgccaaagaaaatagtg
aatcaaaaacagtatcgtattcctggaggcattgcagaaattactgccac
tatcaaggacttgaaagatgcaggggtggtggttcccaccacatctccat
ttaactctcctatctggccagtgcagaaaacagatggatcatggagaatg
acagttgattaccgaaaactaaatcaggtagtaactccaattgcagctgc
tgtaccagatgtagtttcgttacttgagcaaattaacgcatctcctggca
cctggtatgcggctattgatctggcaaatgccttcttctcagtacctgtc
cataaggaccaccagaagcaatttgctttcaattggcaaggccaacagta
taccttcacagttttgcctcaaggatatattaactctcctgccctgtgtc
ataatttagttagaagggatcttgatcgtttggatcttccacaaaatatc
acattggtacactatattgatgacattatgctgattggaccaagtgagca
ggaagtagcaaccactttggactcattggtaacacatatgcgtatcagag
gatgggaaataaatccaaccaaaattcaaggaccatctacctcagtgaaa
ttcttaggagtccagtggtgtggggcatgcagagatattccttctaaggt
gaaagataagttattgcacctggcccctcctacaaccaagaaagaagcac
aacgtttagtgggtctattttggattctggagacagcacatccctcactt
gggtgtgttacctaggcctattaccaagtgactcggaaagctgctagctt
tgtgtggggcctggaacaggagaggcccttcacaggtccaggctgctgtg
caggctgctctaccacttggaccatatgaccagcagaacccgatgggtac
ttggaggggtctgtgctgaaagagaagctgttaggagcctctggcagctc
cctgtaggtgattcacagaaaagactcttgtgaggagccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_89833825_89834929
seq2: B6Ng01-079E17.b_47_1142 (reverse)

seq1  TGATGTCAATTTGAATAATTTGAGGAGTTCCCAAGTTATATGAAAAAAAC  50
      ||||||| | |||||||| |||| |||||||| |||||||||  ||||||
seq2  TGATGTCCA-TTGAATAA-TTGA-GAGTTCCC-AGTTATATG--AAAAAC  44

seq1  TGACAAGGAAAAAATAATGTTACCTTCCTATTCTCAGAATTCTACTATAA  100
      ||||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  TGACAAGGAAAAAATAATG-TACCTTCCTATTCTCAG-ATTCTACTATAA  92

seq1  TAGCTAAGTGTGAAACAGGGGTATCCACAATAAAAACAAAGAAACAAATC  150
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAGCTAAGTGTGAAACAGGGGTATCCAC-ATAAAAACAAAGAAACAAATC  141

seq1  ATCCTAAAACAAAACTCGCAATGTATTAAAATGTAAGACTCAGGTTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAAACAAAACTCGCAATGTATTAAAATGTAAGACTCAGGTTTGAA  191

seq1  AACCAATGAACTGTTGTTGGGGATTGCTTCCAATGTTTTGGATTAACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATGAACTGTTGTTGGGGATTGCTTCCAATGTTTTGGATTAACTTG  241

seq1  GCCACCAAACTCAGGAATCTGCATGTCTAAATGTTGGTGGTCCTTGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCAAACTCAGGAATCTGCATGTCTAAATGTTGGTGGTCCTTGTTCC  291

seq1  CAATTGGTTTTTGATCAATCAATAAAGAGCCAATGGCCAATGGCTGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGGTTTTTGATCAATCAATAAAGAGCCAATGGCCAATGGCTGGGCA  341

seq1  GATACAGTGAGGTGGGATTTGCTCGGCTAGTTCCTGTGTGTGTGTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGTGAGGTGGGATTTGCTCGGCTAGTTCCTGTGTGTGTGTGTGTG  391

seq1  TGTGTGTGTGTGTGTGTGTGTGTGATAGATGAGACTTAAGAGCTGCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGATAGATGAGACTTAAGAGCTGCAAAA  441

seq1  GAGAAAGCCAACCAGCCATGTATGAATTTGGGTACGTGGCCACTGACCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCCAACCAGCCATGTATGAATTTGGGTACGTGGCCACTGACCAC  491

seq1  TTCCCTGACTGGGCCTGGGATAGCAGCGGAAGGTTTAGGAGTATCAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGACTGGGCCTGGGATAGCAGCGGAAGGTTTAGGAGTATCAGGAG  541

seq1  TACTGAAGGAAAGGTTTTGAGAGCAGAGGAATGGTTCGAAGTGTCCAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAGGAAAGGTTTTGAGAGCAGAGGAATGGTTCGAAGTGTCCAGAT  591

seq1  TTTGAGCTAGTCACATCATGTTAAAATTACCTGATGTGTTTCTGTGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCTAGTCACATCATGTTAAAATTACCTGATGTGTTTCTGTGTCTT  641

seq1  TTATTCGTGAATCCACAGAGCTCCTGGGCGAGTGCACGTGTGTGTGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCGTGAATCCACAGAGCTCCTGGGCGAGTGCACGTGTGTGTGACAG  691

seq1  GCTGGGAGCCAGATCGGTTACCCAACTACTGCTACAAACTGGTGGTTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAGCCAGATCGGTTACCCAACTACTGCTACAAACTGGTGGTTAAT  741

seq1  TATTTAATAAATCTTGATAAAAATAAAGGAGGCACATAATGAGGAGCGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATAAATCTTGATAAAAATAAAGGAGGCACATAATGAGGAGCGGT  791

seq1  TCTGTTAATAGATAAAACTAAATTTTGGCATAATCAAATCTGGATAGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAATAGATAAAACTAAATTTTGGCATAATCAAATCTGGATAGGTT  841

seq1  TATGTCACAATTGGGAGAAGGCAAACAAATGATCAATTTCCATCTGAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCACAATTGGGAGAAGGCAAACAAATGATCAATTTCCATCTGAGTA  891

seq1  AAAGCAATCTGTATGTCTGTACAGGTAGGTATGAATTCCAGAGTTCTGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATCTGTATGTCTGTACAGGTAGGTATGAATTCCAGAGTTCTGGC  941

seq1  TGTGTAATTGTTAGACAAAATAATTGTTTTTCTCAAATCTTAATTGACTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAATTGTTAGACAAAATAATTGTTTTTCTCAAATCTTAATTGACTT  991

seq1  TATGGAAGGATTAGATTTTCTCATCATTACTTGCTAGCTTGTATTTTTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAGGATTAGATTTTCTCATCATTACTTGCTAGCTTGTATTTTTCT  1041

seq1  ATTACCTGCTGTTTCTACTCTGCCATTTGTTTCTTTGTACTTTTCAAATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTGCTGTTTCTACTCTGCCATTTGTTTCTTTGTACTTTTCAAATG  1091

seq1  AATTC  1105
      |||||
seq2  AATTC  1096