BAC Information

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BAC

Clone NameB6Ng01-079N04
Chromosome14 (Build37)
Map Location 52,719,482 - 52,884,923
singlet/doubletdoublet
Overlap geneHnrpc, Rpgrip1, Supt16h, Chd8, Rab2b
Upstream geneRnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352
Downstream geneTox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079N04.bB6Ng01-079N04.g
ACCDH895123DH895124
length1,1631,088
definitionDH895123|Mus musculus domesticus DNA, BAC clone: B6Ng01-079N04, 5' end.DH895124|Mus musculus domesticus DNA, BAC clone: B6Ng01-079N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,719,482 - 52,720,657)(52,883,833 - 52,884,923)
sequence
gaattccaagatcagccagagcaccaagaagtatgagaccctgtctggaa
aaagccaaaaacaaaaacgcagcaatgtaaaaagcattacgtgttttatg
tcaacaagtaatctcacctatgttatcaaactaatgagctactgctactt
ttttaaaaagcaaaatgtctttccctacataaagaacatatatataggag
ttggaaagatggttcagcaggtaagagcactgctctcagaggttctaatt
ccagcacccagatgctagctcacacctaattctagttccagggagtccta
ggttttctttatgtcttacatgtccagcagacaagcacacagtgcacata
catacatatgtacatacatacatgcagccatacacagaaaaattagaatt
taagtatttctgggctatattctcaaaactctcattaaggtttgtttgga
tgagctcttctaaaaggacactcaaaaatgagtcaagacaagaaaaatca
cctggtacttattaaaaatgtaaaatctagagaaccatatgactcaactg
aaactggtagtccagagcccagccgtcgttttttaaactgatagtgggaa
ccaatactcaatgtagcttttcaaaaacagtaataaacaccaaaaagatt
ttcaccagtcaattcttcagtatatttagttcatacaaaaccataaccct
tccaatgaaagttgagtgtatgaagtgtaagtaaataatgctaagaacaa
ataccaacaaatttacttgaccgcttatagtaatactgtttttaaggaag
tcaatagcaatgactaggttttttttttccttttaagatgagatctcatc
tgttaacactggctgacctataactagctatttagaccatgctagcctcc
aactcagacatctgcctgcccgtctgcccatctgcccctgcctcccaagg
aagtacactcccttactagggtacacttcaccagtagagcaggaaacagt
ggggatgaggtgggactttttgtgtagcaccactttcaccatgagtcgtg
aataatgagaattcaaatttccaattaaattaggtagctagttggcttcc
agctcaaacaaaccagaagccttattactgaaatttataagagttttact
ccgccaaaatttt
gaattctctgtattactcccttctactgtttattaattattctcaggttt
tatttagtcagtttgagatagagtgtttctgggtagccctggctggtctg
gaattcactgtgtagaccagactagcctcaggcctgtgatctccttacct
ctgcctcctcagtgttgaggtcacaggattgggactaccacatccagatt
cttaattcaccttaggaatccaattaaaaatatttgtattttggactggc
gagatggctcagcaggtaagagcactgactgctcttctgtggtcctgagt
tcaactcccagcaaccacatggtggctcacaaccaactgtaatgaaatct
gatgccttcttctggtgtgtctgtagacagcaacagtcaacagtgtattt
aatctatagtaataaatctttaaaaaaaatatcatctctctatgtaattt
aaggctgataaaagatttctgtctcctccaggcctacattaatacagcca
aagaaatatataggaagatccagcaaggtttatttgatgtccacaatgag
gtgagaaaagtttggggttagaaccggcagctatcttgatagatgctctc
tagaatgtcagcgttcctgcctgatgtcacactgatcacaggtggttttt
aggtgcaggtatctaagaccccacattacattctgtttactctcagtctg
aaccccatacatattgttgagagagatatgccagtgatttacagacgtac
ataatatgagcgtttttctccttgacctcagttttttactattggagaga
gagagaggatttttcatttcttaggagggaaaattctgagacaaaacaaa
gaatcatatgctaatttgtttgccacttctactcttttgctttgcttact
cttttaaaaaaagaatttttttcttatgtatattgtatgtgatgagcatg
tatatatatgcatgttacatatgtgttggaaaatgttggtgttcatctgg
aggcacaggtgtcttttcatgctgttccactttaaccactgaggcaggtt
gcctctggggacctcccttgtatcttgcttctaaggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_52719482_52720657
seq2: B6Ng01-079N04.b_49_1211

seq1  GAATTCCAAGATCAGCCAGAGCACCAAGCTGTATGAGACCCTGTCTGGAA  50
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  GAATTCCAAGATCAGCCAGAGCACCAAGAAGTATGAGACCCTGTCTGGAA  50

seq1  AAAGCCAAAAACAAAAACGCAGCAATGTAAAAAGCATTACGTGTTTTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAAAAACAAAAACGCAGCAATGTAAAAAGCATTACGTGTTTTATG  100

seq1  TCAACAAGTAATCTCACCTATGTTATCAAACTAATGAGCTACTGCTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAGTAATCTCACCTATGTTATCAAACTAATGAGCTACTGCTACTT  150

seq1  TTTTAAAAAGCAAAATGTCTTTCCCTACATAAAGAACATATATATAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAGCAAAATGTCTTTCCCTACATAAAGAACATATATATAGGAG  200

seq1  TTGGAAAGATGGTTCAGCAGGTAAGAGCACTGCTCTCAGAGGTTCTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAGATGGTTCAGCAGGTAAGAGCACTGCTCTCAGAGGTTCTAATT  250

seq1  CCAGCACCCAGATGCTAGCTCACACCTAATTCTAGTTCCAGGGAGTCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACCCAGATGCTAGCTCACACCTAATTCTAGTTCCAGGGAGTCCTA  300

seq1  GGTTTTCTTTATGTCTTACATGTCCAGCAGACAAGCACACAGTGCACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTTTATGTCTTACATGTCCAGCAGACAAGCACACAGTGCACATA  350

seq1  CATACATATGTACATACATACATGCAGCCATACACAGAAAAATTAGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATATGTACATACATACATGCAGCCATACACAGAAAAATTAGAATT  400

seq1  TAAGTATTTCTGGGCTATATTCTCAAAACTCTCATTAAGGTTTGTTTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTTCTGGGCTATATTCTCAAAACTCTCATTAAGGTTTGTTTGGA  450

seq1  TGAGCTCTTCTAAAAGGACACTCAAAAATGAGTCAAGACAAGAAAAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCTTCTAAAAGGACACTCAAAAATGAGTCAAGACAAGAAAAATCA  500

seq1  CCTGGTACTTATTAAAAATGTAAAATCTAGAGAACCATATGACTCAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTACTTATTAAAAATGTAAAATCTAGAGAACCATATGACTCAACTG  550

seq1  AAACTGGTAGTCCAGAGCCCAGCCGTCGTTTTTTAAACTGATAGTGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGTAGTCCAGAGCCCAGCCGTCGTTTTTTAAACTGATAGTGGGAA  600

seq1  CCAATACTCAATGTAGCTTTTCAAAAACAGTAATAAACACCAAAAAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATACTCAATGTAGCTTTTCAAAAACAGTAATAAACACCAAAAAGATT  650

seq1  TTCACCAGTCAATTCTTCAGTATATTTAGTTCATACAAAACCATAACCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCAGTCAATTCTTCAGTATATTTAGTTCATACAAAACCATAACCCT  700

seq1  TCCAATGAAAGTTGAGTGTATGAAGTGTAAGTAAATAATGCTAAGAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGAAAGTTGAGTGTATGAAGTGTAAGTAAATAATGCTAAGAACAA  750

seq1  ATACCAACAAATTTACTTGACCGCTTATAGTAATACTGTTTTTAAGGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAACAAATTTACTTGACCGCTTATAGTAATACTGTTTTTAAGGAAG  800

seq1  TCAATAGCAATGACTAGGTTTTTTTTTTCCTTTTAAGATGAGATCTCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGCAATGACTAGGTTTTTTTTTTCCTTTTAAGATGAGATCTCATC  850

seq1  TGTTAACACTGGCTGACCTATAACTAGCTATTTAGACCATGCTAGCCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACACTGGCTGACCTATAACTAGCTATTTAGACCATGCTAGCCTCC  900

seq1  AACTCAGACATCTGCCTGCCCGTCTGCCCATCTGCCCCTGCCTCCCAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGACATCTGCCTGCCCGTCTGCCCATCTGCCCCTGCCTCCCAAGG  950

seq1  AAGTACACTCCCTTACTAGGGTACACTTCACCAGTAAGAGCAGGAAACAG  1000
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  AAGTACACTCCCTTACTAGGGTACACTTCACCAGT-AGAGCAGGAAACA-  998

seq1  GTGGGGATGAGGTGGGACTTTTTGTGTAGTCAACCACTTTCAACAATGAG  1050
      |||||||||||||||||||||||||||||   ||||||||| || |||||
seq2  GTGGGGATGAGGTGGGACTTTTTGTGTAG--CACCACTTTC-ACCATGAG  1045

seq1  TCGTGATAAATGAGAATTCAAATTTTCCATATAAATTAGGTAGTCTAGTT  1100
      ||||||  |||||||||||||| ||||||  |||||||||||| ||||||
seq2  TCGTGAATAATGAGAATTCAAA-TTTCCAATTAAATTAGGTAG-CTAGTT  1093

seq1  TGCTTTACAGCTCAAAACAAACCCAGAAGCCTAATTTACTGGATATTTAT  1150
       || || |||||| ||||||| |||||||||| | ||||| || ||||||
seq2  GGC-TTCCAGCTC-AAACAAA-CCAGAAGCCTTA-TTACT-GAAATTTAT  1138

seq1  AAGAGTTTTTACTCAGCCAAGATTTT  1176
      ||||| |||||||| ||||| |||||
seq2  AAGAG-TTTTACTCCGCCAAAATTTT  1163

seq1: chr14_52883833_52884923
seq2: B6Ng01-079N04.g_70_1157 (reverse)

seq1  GTCCTTAGAAGCAAAGATAC-AGGGA-GTCCCCAGAGCAAACCTGCCTCA  48
      |||||||||||| ||||||| ||||| ||||||||||  |||||||||||
seq2  GTCCTTAGAAGC-AAGATACAAGGGAGGTCCCCAGAGGCAACCTGCCTCA  49

seq1  GTGTGTAAGGT-GAACAGCAATGAAAAGACACCTGTTGCCTCCAGATGAA  97
      |||  ||| || ||||||| ||||||||||||||| ||||||||||||||
seq2  GTGGTTAAAGTGGAACAGC-ATGAAAAGACACCTG-TGCCTCCAGATGAA  97

seq1  CACCCACATTTTTCCCAACACATATGTAAACATGCATATATATACATGCT  147
      |||| |||||||  ||||||||||||| ||||||||||||||||||||||
seq2  CACCAACATTTT--CCAACACATATGT-AACATGCATATATATACATGCT  144

seq1  CATCACATACAATATACATAAGAAAAAAATTCTTTTTTTAAAAGAGTAAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACATACAATATACATAAGAAAAAAATTCTTTTTTTAAAAGAGTAAG  194

seq1  CAAAGCAAAAGAGTAGAAGTGGCAAACAAATTAGCATATGATTCTTTGTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAAAAGAGTAGAAGTGGCAAACAAATTAGCATATGATTCTTTGTT  244

seq1  TTGTCTCAGAATTTTCCCTCCTAAGAAATGAAAAATCCTCTCTCTCTCTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCAGAATTTTCCCTCCTAAGAAATGAAAAATCCTCTCTCTCTCTC  294

seq1  CAATAGTAAAAAACTGAGGTCAAGGAGAAAAACGCTCATATTATGTACGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTAAAAAACTGAGGTCAAGGAGAAAAACGCTCATATTATGTACGT  344

seq1  CTGTAAATCACTGGCATATCTCTCTCAACAATATGTATGGGGTTCAGACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAATCACTGGCATATCTCTCTCAACAATATGTATGGGGTTCAGACT  394

seq1  GAGAGTAAACAGAATGTAATGTGGGGTCTTAGATACCTGCACCTAAAAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAAACAGAATGTAATGTGGGGTCTTAGATACCTGCACCTAAAAAC  444

seq1  CACCTGTGATCAGTGTGACATCAGGCAGGAACGCTGACATTCTAGAGAGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTGATCAGTGTGACATCAGGCAGGAACGCTGACATTCTAGAGAGC  494

seq1  ATCTATCAAGATAGCTGCCGGTTCTAACCCCAAACTTTTCTCACCTCATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCAAGATAGCTGCCGGTTCTAACCCCAAACTTTTCTCACCTCATT  544

seq1  GTGGACATCAAATAAACCTTGCTGGATCTTCCTATATATTTCTTTGGCTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACATCAAATAAACCTTGCTGGATCTTCCTATATATTTCTTTGGCTG  594

seq1  TATTAATGTAGGCCTGGAGGAGACAGAAATCTTTTATCAGCCTTAAATTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATGTAGGCCTGGAGGAGACAGAAATCTTTTATCAGCCTTAAATTA  644

seq1  CATAGAGAGATGATATTTTTTTTAAAGATTTATTACTATAGATTAAATAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGAGATGATATTTTTTTTAAAGATTTATTACTATAGATTAAATAC  694

seq1  ACTGTTGACTGTTGCTGTCTACAGACACACCAGAAGAAGGCATCAGATTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGACTGTTGCTGTCTACAGACACACCAGAAGAAGGCATCAGATTT  744

seq1  CATTACAGTTGGTTGTGAGCCACCATGTGGTTGCTGGGAGTTGAACTCAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAGTTGGTTGTGAGCCACCATGTGGTTGCTGGGAGTTGAACTCAG  794

seq1  GACCACAGAAGAGCAGTCAGTGCTCTTACCTGCTGAGCCATCTCGCCAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAGAAGAGCAGTCAGTGCTCTTACCTGCTGAGCCATCTCGCCAGT  844

seq1  CCAAAATACAAATATTTTTAATTGGATTCCTAAGGTGAATTAAGAATCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATACAAATATTTTTAATTGGATTCCTAAGGTGAATTAAGAATCTG  894

seq1  GATGTGGTAGTCCCAATCCTGTGACCTCAACACTGAGGAGGCAGAGGTAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGTAGTCCCAATCCTGTGACCTCAACACTGAGGAGGCAGAGGTAA  944

seq1  GGAGATCACAGGCCTGAGGCTAGTCTGGTCTACACAGTGAATTCCAGACC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCACAGGCCTGAGGCTAGTCTGGTCTACACAGTGAATTCCAGACC  994

seq1  AGCCAGGGCTACCCAGAAACACTCTATCTCAAACTGACTAAATAAAACCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGCTACCCAGAAACACTCTATCTCAAACTGACTAAATAAAACCT  1044

seq1  GAGAATAATTAATAAACAGTAGAAGGGAGTAATACAGAGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAATTAATAAACAGTAGAAGGGAGTAATACAGAGAATTC  1088