BAC Information

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BAC

Clone NameB6Ng01-080A15
Chromosome14 (Build37)
Map Location 38,535,755 - 38,677,246
singlet/doubletdoublet
Overlap geneLOC382871, LOC382872
Upstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
Downstream geneNrg3, LOC100041521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080A15.bB6Ng01-080A15.g
ACCDH895286DH895287
length1,0271,147
definitionDH895286|Mus musculus domesticus DNA, BAC clone: B6Ng01-080A15, 5' end.DH895287|Mus musculus domesticus DNA, BAC clone: B6Ng01-080A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,676,711 - 38,677,246)(38,535,755 - 38,536,911)
sequence
gaattcattcttaccatatcaagtagcattggctcttacctggaagtagc
caaccaatgtttgatttgaattaatgcccactctgttggatggaaaccac
acatgtcaatgcctgggtagccatgaaccagagactagatagaccagaga
agtagggtaaaaccaaatccaattggtctaaaaaaatcaacaaaatgact
cataatgctattctactatattcagattagagtcttatccagtaattatc
agagtcttcccttcagcacagacaaaaacacatgtagagacccatagcca
gatattatgaggaatgagagagagtgtgtgtctaaattggaggtctccat
gaaatccttccactcaggtcttaaagatgtctgtagaaagaatgtaagag
ccatagaggataccaaaagaacacacccctctgaatcaactaagcaaggt
gcatatgtgctcacagagattgaagcagaaatcatggggcctgcaggagt
ctatgtctgctgtataaataatttagctcttaacttaatattttataaga
tgttggactgtgagaataagagggtctctgactctttgtctgctcttggg
actttttttctcttgttgaattgccatgttcaactttcatgtgatagttt
ttgcttcctatcactgtactttgtttttgtcacgtttggttgttaaaaca
aacaaacacatacacacaaacaaaattcccacatgattgccttattagtt
acttattaattgttatgataaaataccataattaaaaaacaatttatgtt
atcaataacttattttgacttaatagttccagaggtttaagagtccatta
tggcaggaagcatggcagcatataataaggcacactcacatccttaacca
caaatatgaatcagagaagcagcaaaatggaactaatgcaagtctataca
tgttcagtgcctcctttcctactcagaaatgtgcttgcttcagcaggttt
catctccaaacctccacaaacagtaca
gaattcaaccagaataaggattccagtcgagcaggcaatggatgaggttg
tatacatgcagacagagagaatgatgggacagaaggagttgacagagata
tgattgtgacccagaggcaaaccagtttcatctggcccataacacagctg
gaaatgaagaagccagcgaaaaataaaatgtgtggccatacatatgaaga
ggaagccattgttcacatgattgaatccaagcataagaggaagaagaagg
cctgttgcccaaaaattggctgtagccatacagacatgcgaatgtcagat
ctcattccggatgaagccctgggaagggcaatcgagagccacaacaagaa
gaaaaaacacctctctgagtaggagcaagccacctacccacagggatgtc
agcagcctacctccctgccagccaccagagagtgagggtagacagcgata
gacctggctgagcagtgctgtttgcggtaacccttgagggctaattgtaa
ttgaaagcattttttaagttgcacagtaaaaacacaagtacattatattc
tttattttcaagtgctctgaaattttaaataaaactttgataatcctcaa
aaaaatttaaaaaagaaatatatcttaaaattaacctcacagtggataga
atctgagatgacctaaccatttcgttaagcctcaagtcactgaggttatc
agaattcagttgtacaactttaagagtgcccatttcatattttcatactc
cctgggttgatgtgccattaagctttcaaactctcttgcagaaaatgcaa
aaatcaaagcagaatcacatatggtaatttactagcaaacatttttattg
caaattttgcatttgttctctatttctgacaaaagatgcttctggattgg
gcactgggtcatgatagcaccatcctgatcactgatcattgctattgcta
tttgtatatggatatcattactatgtgtattaacccatcaatgctcagag
aggccattcttcatgatacggagaagtacgtggaattgcaacggatctga
gtagataacttgagttatctctttttatatgctttagcttagtaatcatg
tttgttacagggtctatttttcttaatgataagtatgttatgaattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_38676711_38677246
seq2: B6Ng01-080A15.b_45_580 (reverse)

seq1  AAGTTAAGAGCTAAATTATTTATACAGCAGACATAGACTCCTGCAGGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAGAGCTAAATTATTTATACAGCAGACATAGACTCCTGCAGGCCC  50

seq1  CATGATTTCTGCTTCAATCTCTGTGAGCACATATGCACCTTGCTTAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTTCTGCTTCAATCTCTGTGAGCACATATGCACCTTGCTTAGTTG  100

seq1  ATTCAGAGGGGTGTGTTCTTTTGGTATCCTCTATGGCTCTTACATTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAGGGGTGTGTTCTTTTGGTATCCTCTATGGCTCTTACATTCTTT  150

seq1  CTACAGACATCTTTAAGACCTGAGTGGAAGGATTTCATGGAGACCTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGACATCTTTAAGACCTGAGTGGAAGGATTTCATGGAGACCTCCAA  200

seq1  TTTAGACACACACTCTCTCTCATTCCTCATAATATCTGGCTATGGGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACACACACTCTCTCTCATTCCTCATAATATCTGGCTATGGGTCTC  250

seq1  TACATGTGTTTTTGTCTGTGCTGAAGGGAAGACTCTGATAATTACTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTGTTTTTGTCTGTGCTGAAGGGAAGACTCTGATAATTACTGGAT  300

seq1  AAGACTCTAATCTGAATATAGTAGAATAGCATTATGAGTCATTTTGTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCTAATCTGAATATAGTAGAATAGCATTATGAGTCATTTTGTTGA  350

seq1  TTTTTTTAGACCAATTGGATTTGGTTTTACCCTACTTCTCTGGTCTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAGACCAATTGGATTTGGTTTTACCCTACTTCTCTGGTCTATCT  400

seq1  AGTCTCTGGTTCATGGCTACCCAGGCATTGACATGTGTGGTTTCCATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGGTTCATGGCTACCCAGGCATTGACATGTGTGGTTTCCATCCA  450

seq1  ACAGAGTGGGCATTAATTCAAATCAAACATTGGTTGGCTACTTCCAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTGGGCATTAATTCAAATCAAACATTGGTTGGCTACTTCCAGGTA  500

seq1  AGAGCCAATGCTACTTGATATGGTAAGAATGAATTC  536
      ||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAATGCTACTTGATATGGTAAGAATGAATTC  536

seq1: chr14_38535755_38536911
seq2: B6Ng01-080A15.g_69_1215

seq1  GAATTCAACCAGAATAAGGATTCCAGTCGAGCAGGCAATGGATGAGGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCAGAATAAGGATTCCAGTCGAGCAGGCAATGGATGAGGTTG  50

seq1  TATACATGCAGACAGAGAGAATGATGGGACAGAAGGAGTTGACAGAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGCAGACAGAGAGAATGATGGGACAGAAGGAGTTGACAGAGATA  100

seq1  TGATTGTGACCCAGAGGCAAACCAGTTTCATCTGGCCCATAACACAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTGACCCAGAGGCAAACCAGTTTCATCTGGCCCATAACACAGCTG  150

seq1  GAAATGAAGAAGCCAGCGAAAAATAAAATGTGTGGCCATACATATGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAGAAGCCAGCGAAAAATAAAATGTGTGGCCATACATATGAAGA  200

seq1  GGAAGCCATTGTTCACATGATTGAATCCAAGCATAAGAGGAAGAAGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCATTGTTCACATGATTGAATCCAAGCATAAGAGGAAGAAGAAGG  250

seq1  CCTGTTGCCCAAAAATTGGCTGTAGCCATACAGACATGCGAATGTCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGCCCAAAAATTGGCTGTAGCCATACAGACATGCGAATGTCAGAT  300

seq1  CTCATTCCGGATGAAGCCCTGGGAAGGGCAATCGAGAGCCACAACAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCCGGATGAAGCCCTGGGAAGGGCAATCGAGAGCCACAACAAGAA  350

seq1  GAAAAAACACCTCTCTGAGTAGGAGCAAGCCACCTACCCACAGGGATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAACACCTCTCTGAGTAGGAGCAAGCCACCTACCCACAGGGATGTC  400

seq1  AGCAGCCTACCTCCCTGCCAGCCACCAGAGAGTGAGGGTAGACAGCGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTACCTCCCTGCCAGCCACCAGAGAGTGAGGGTAGACAGCGATA  450

seq1  GACCTGGCTGAGCAGTGCTGTTTGCGGTAACCCTTGAGGGCTAATTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGCTGAGCAGTGCTGTTTGCGGTAACCCTTGAGGGCTAATTGTAA  500

seq1  TTGAAAGCATTTTTTAAGTTGCACAGTAAAAACACAAGTACATTATATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCATTTTTTAAGTTGCACAGTAAAAACACAAGTACATTATATTC  550

seq1  TTTATTTTCAAGTGCTCTGAAATTTTAAATAAAACTTTGATAATCCTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCAAGTGCTCTGAAATTTTAAATAAAACTTTGATAATCCTCAA  600

seq1  AAAAATTTAAAAAAGAAATATATCTTAAAATTAACCTCACAGTGGATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTAAAAAAGAAATATATCTTAAAATTAACCTCACAGTGGATAGA  650

seq1  ATCTGAGATGACCTAACCATTTCGTTAAGCCTCAAGTCACTGAGGTTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGATGACCTAACCATTTCGTTAAGCCTCAAGTCACTGAGGTTATC  700

seq1  AGAATTCAGTTGTACAACTTTAAGAGTGCCCATTTCATA-TTTCATACTC  749
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAATTCAGTTGTACAACTTTAAGAGTGCCCATTTCATATTTTCATACTC  750

seq1  CCTGGGTTGATGTGCCATTAAGCTTTCAAACTCTCTTGCAGAAAATGCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTTGATGTGCCATTAAGCTTTCAAACTCTCTTGCAGAAAATGCAA  800

seq1  AAATCAAAGCAGAATCACATATGGTAATTTACTAGCAAACATTTTTATTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAGCAGAATCACATATGGTAATTTACTAGCAAACATTTTTATTG  850

seq1  CAAATTTTGCATTTGTTCTCTATTTCTGACAAAAGATGCTTCTGGAATGG  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAAATTTTGCATTTGTTCTCTATTTCTGACAAAAGATGCTTCTGGATTGG  900

seq1  GCACT-GGTCATGATAGCACCATCCTGATCACTGATCATTGCTATTGCTA  948
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGGTCATGATAGCACCATCCTGATCACTGATCATTGCTATTGCTA  950

seq1  TTTGTTATTATGGATAATCATTACTAATGTTGTTATTTAACCCCAATCAA  998
      |||||   ||||||| ||||||||||    |||   |||||||  |||||
seq2  TTTGT--ATATGGAT-ATCATTACTA----TGTGTATTAACCC--ATCAA  991

seq1  TGCCTCAGAGAGGCCATTCTTCATGATAACCGAAGAAGTACGTGGAAATG  1048
      || |||||||||||||||||||||||||  || |||||||||||||| ||
seq2  TG-CTCAGAGAGGCCATTCTTCATGATA--CGGAGAAGTACGTGGAATTG  1038

seq1  CAACGAATCTGAGTAGATAAACTTGAAGTATCTC-TTTTATATGCTTTAG  1097
      ||||| |||||||||||| |||||||  |||||| |||||||||||||||
seq2  CAACGGATCTGAGTAGAT-AACTTGAGTTATCTCTTTTTATATGCTTTAG  1087

seq1  CTTTTAGTAATCATGTTTGATACAAGGTCTA-TTTTCATAATGATAAGTA  1146
      |  |||||||||||||||| |||| |||||| ||||| ||||||||||||
seq2  C--TTAGTAATCATGTTTGTTACAGGGTCTATTTTTCTTAATGATAAGTA  1135

seq1  -GTTATGAATTG  1157
       |||||||||||
seq2  TGTTATGAATTG  1147