BAC Information

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BAC

Clone NameB6Ng01-080J13
Chromosome14 (Build37)
Map Location 112,999,399 - 113,000,450
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk5, LOC100043501, EG223186
Downstream geneLOC100043509, Tpm3-rs7, LOC100043510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080J13.bB6Ng01-080J13.g
ACCDH895689DH895690
length1,047713
definitionDH895689|Mus musculus domesticus DNA, BAC clone: B6Ng01-080J13, 5' end.DH895690|Mus musculus domesticus DNA, BAC clone: B6Ng01-080J13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgttgaagaataagtttgagaatccattatcaaaaatacagt
atttaggatttcaaattcattttgataattaatatttatatataaattat
gtgacatttgagtgagcccctaatttaaacataagttcatgtttacttgc
acacatagccttatgagaaatctttacagtaatttaggtgtagcttcatt
agactctgaaaaaaaatcacaaatgaatagtaacaggatatttccaaatt
tgttacaaaaactaaaagggttatgattttagagcataccagaattttaa
tttcagattaaaactatgtagcctatattattttataaagaaaattaatt
cttaaatattacatattagtacacacacacacacatatatatatatatat
atatatatatgaatatatatgtttaagaaaatttaaatcacctttactgt
tacattcacaatcactaaatatgacttgaaatatgattttattgcatttt
gaaagtataatttttatttttaatgtagtacccaatgtacctggaagctc
agtaaagaattctttaaaaacaataaattccaaagtctgaatatttataa
tacagagttataattactctggccaaaattaatcttattaaaaataatct
tgtaatcattattttgctgatggataattagaaataaatgtaaagcaatt
tacaaaacgtattttgattactacagattttacatagacaaagcatgctt
ttggtttgactataaatatattttttccgtgtatgggacagacctagaca
cttttcatgtgggagtcctaaaggtgagcaggtaccatctctcactacat
tgcctgcttttgaatccctttctcctgtctgccctgtgctctctatcctc
atagaagagatgtaacaagtcttattgaaactggatatgccaggcaagtt
gatatccaatgaaacctccccctttctgcagagaggaggatgagagtgat
acaggagagaggcagtgggagggagggactggaaggagggaagggga

gaattctttgtttagctctctaacccatttttaatagggtgatttgattt
tttggcgtccaacttctagagctctttatatatattggatattattccct
tatagaatttaggattaataaatatcctttcccaatctgttggttggtgg
cctttttgtcttattgacagtatcttttgccttacagaagccatgcaatt
ttattaaatcccatttgtcaatagtttttctctgtgcccatatcttttag
acttttccccattttctcctctataaggaaggaccatccagagactgccc
cacctgaggatccatcctataaacaaccaccaaacccagatgctatattg
catatgccagcaagattttgctgacaggatcctgatatagctgtctcttg
tgaggatatgccagtgcctggcaaatacagaagtagatgctcacagtcat
ctattggttggcacacagggaccccaatgaaggatctagagaatttactc
aaggagctaaaggggtctgcaaccctataggaagaacaacaatatgaaat
aatgagtatcccccagagctcttgtctctagttgaatttgtagcagactt
cggtgtagtaggccattaattggaagagaggctcttggtcttgtgaagat
catatgccccagtacaggggaatgctgggtctaggaagcaggattgggtg
ggttggggagcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_112999399_113000450
seq2: B6Ng01-080J13.b_46_1092

seq1  GAATTCTCTGTTGAAGAATAAGTTTGAGAATCCATTATCAAAAATACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTGAAGAATAAGTTTGAGAATCCATTATCAAAAATACAGT  50

seq1  ATTTAGGATTTCAAATTCATTTTGATAATTAATATTTATATATAAATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGATTTCAAATTCATTTTGATAATTAATATTTATATATAAATTAT  100

seq1  GTGACATTTGAGTGAGCCCCTAATTTAAACATAAGTTCATGTTTACTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATTTGAGTGAGCCCCTAATTTAAACATAAGTTCATGTTTACTTGC  150

seq1  ACACATAGCCTTATGAGAAATCTTTACAGTAATTTAGGTGTAGCTTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAGCCTTATGAGAAATCTTTACAGTAATTTAGGTGTAGCTTCATT  200

seq1  AGACTCTGAAAAAAAATCACAAATGAATAGTAACAGGATATTTCCAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTGAAAAAAAATCACAAATGAATAGTAACAGGATATTTCCAAATT  250

seq1  TGTTACAAAAACTAAAAGGGTTATGATTTTAGAGCATACCAGAATTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAAAAACTAAAAGGGTTATGATTTTAGAGCATACCAGAATTTTAA  300

seq1  TTTCAGATTAAAACTATGTAGCCTATATTATTTTATAAAGAAAATTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATTAAAACTATGTAGCCTATATTATTTTATAAAGAAAATTAATT  350

seq1  CTTAAATATTACATATTAGTACACACACACACACATATATATATATATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATATTACATATTAGTACACACACACACACATATATATATATATAT  400

seq1  ATATATATATGAATATATATGTTTAAGAAAATTTAAATCACCTTTACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATGAATATATATGTTTAAGAAAATTTAAATCACCTTTACTGT  450

seq1  TACATTCACAATCACTAAATATGACTTGAAATATGATTTTATTGCATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCACAATCACTAAATATGACTTGAAATATGATTTTATTGCATTTT  500

seq1  GAAAGTATAATTTTTATTTTTAATGTAGTACCCAATGTACCTGGAAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATAATTTTTATTTTTAATGTAGTACCCAATGTACCTGGAAGCTC  550

seq1  AGTAAAGAATTCTTTAAAAACAATAAATTCCAAAGTCTGAATATTTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAATTCTTTAAAAACAATAAATTCCAAAGTCTGAATATTTATAA  600

seq1  TACAGAGTTATAATTACTCTGGCCAAAATTAATCTTATTAAAAATAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTTATAATTACTCTGGCCAAAATTAATCTTATTAAAAATAATCT  650

seq1  TGTAATCATTATTTTGCTGATGGATAATTAGAAATAAATGTAAAGCAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCATTATTTTGCTGATGGATAATTAGAAATAAATGTAAAGCAATT  700

seq1  TACAAAACGTATTTTGATTACTACAGATTTTACATAGACAAAGCATGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAACGTATTTTGATTACTACAGATTTTACATAGACAAAGCATGCTT  750

seq1  TTGGTTTGACTATAAATATATTTTTTCCGTGTATGGGACAGACCTAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGACTATAAATATATTTTTTCCGTGTATGGGACAGACCTAGACA  800

seq1  CTTTTCATGTGGGAGTCCTAAAGGTGAGCAGGTACCATCTCTCACTACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATGTGGGAGTCCTAAAGGTGAGCAGGTACCATCTCTCACTACAT  850

seq1  TGCCTGCTTTTGAATCCCTTTCTCCTGTCTGCCCTGTGCTCTCTATCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTTTTGAATCCCTTTCTCCTGTCTGCCCTGTGCTCTCTATCCTC  900

seq1  AATAGAAGAAGATGTAACAAGTCTTATTGAAACTGGATATGCCAAGGCAA  950
       ||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  -ATAGAAG-AGATGTAACAAGTCTTATTGAAACTGGATATGCC-AGGCAA  947

seq1  GTTGATATCCAATGAAAACCTCCCCCTTTCTGCAGAGAGGAGGATGAGGA  1000
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  GTTGATATCCAATG-AAACCTCCCCCTTTCTGCAGAGAGGAGGATGA-GA  995

seq1  GTGAATACAGGAGAGAGGCAGTGAGAGGGAGGGACTGGAAGGAGGG-AGG  1049
      ||| ||||||||||||||||||| |||||||||||||||||||||| |||
seq2  GTG-ATACAGGAGAGAGGCAGTGGGAGGGAGGGACTGGAAGGAGGGAAGG  1044

seq1  GGA  1052
      |||
seq2  GGA  1047


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