BAC Information

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BAC

Clone NameB6Ng01-080K13
Chromosome8 (Build37)14 (Build37)
Map Location 26,215,471 - 26,215,66953,590,142 - 53,591,271
singlet/doubletsingletsinglet
Overlap geneLOC100042390
Upstream gene1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5, Adam32, Adam9, Tm2d2, Htra4, Plekha2
Downstream geneTacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta, Hook3, 1700047A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080K13.bB6Ng01-080K13.g
ACCDH895733DH895734
length9211,107
definitionDH895733|Mus musculus domesticus DNA, BAC clone: B6Ng01-080K13, 5' end.DH895734|Mus musculus domesticus DNA, BAC clone: B6Ng01-080K13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(26,215,471 - 26,215,669)(53,590,142 - 53,591,271)
sequence
gaattcctgttctcccaccccctttatttccccaggagcgctgccccacg
ttttctcaaggtcatgacatggattctgtatataaaactacagcagaact
tggcagttgtgtgtttcccacatggaactgattttgaaaatgtgaaggga
cgtaaaaatactatttgggctcaatgcttggtaggatcagaatctgcctg
aagagaggctattggtaaaggtgctatctcaattgtactggaaaccatga
catcgaagatcccaggaccatgaaatgaccaagaacactggcaggtatag
attgtagccagactgaacccatggtagaactgcccaagccctgtggagcc
caaaaaaactccaagtgagttccagaccctgaaaccctgagctctttgca
ctgttgggttttgtttttgcatttatctaattgcaactgtgtctgattct
tccctgttagaataagaaggacaattgagaaacttcaggcttttaaaaag
acttttgatattttatcgtcttctgtgaaccttaacttttaacatctgag
cttcagctcaggttagatttttttttttaacagactgaacttttaaaatg
tttaaattttttaaagattgtgggactttaaaaagtttaaattcttatat
tagcatcagatattgggaggataataaagtttaccatgtaatagtgatgc
atttgtgtgtcaagttgtcgaggggtaaactttactgggtagtttctgtc
aatttaaaacaagctagctccgggcggtggtggcgcatacctttaatccc
agcacttgggaggcagaggcaagcagattctgattcgaggccagtctggg
ctacaaatgagtgccaggacagccagggctacaagagaaaccctgtctcg
aaaaaaaaaaaaaacccaacc
gaattctttgtctagaatttcttccaggtgatgtgtatgtatgagattag
taatttgtggaacagatctatgtcttggtttcacatcttgtttctgtttc
tgtgttggaatttcacatctacagtacattgttggttatggttcttcctt
cttctttttcttcctttgctacttccccatcccatcatccttgttcaatc
tacctttcttcttagcagagatatttctaatgtacaggagaagactaagg
gagagtaattttcctacttggggctggtacagaaagttccagagaggcat
atgttgtcctaagctggagcagtcagtagcctacttgttaccaaggctgt
gtggcctgggctcctggaacaaagttcctagaggttttagatggttctag
tacatcaggttggccaggaactggaggatagtttccgaattgtgtacatc
taagaggggaagacaagtccttttctggaggaggcccatggattgtgttt
gtttactaagtttcggggtggggtaggcatgtctaagcataggaatccag
ctttcttaccttcaatctctgtatgctagacttctgaagcaaaattcaag
gggttcctgggagctgtaggtgggtctggtttatatgcccatgggccgtc
ctgaagcttagttccccaggggtataagtgggtctcctcaaaagagaatt
ttcactctgctattccaatgaaagtatttataattataaatctttctttt
aaaactgcaaactgctttaaacatttttagctaaaacttatattgagaga
gagagaacacagagaaaaaagagaacctatgaaatttgcaaacatctttg
aaaggtagctatgctcaccatcacatcatcaaagccctattcatctttac
aagatatgctactaataacgaggagagaatatcagaattaaagacccatg
gatcaatgggctttacagacatcacagagcaagagtacgcattcttctct
agcatgtggaggttttcagaaagatctattgctggcctaatataagccta
catgaaaaaaataaatgaactgctcgtttcttttacgatgtggggggaga
ggatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_26215471_26215669
seq2: B6Ng01-080K13.b_786_962 (reverse)

seq1  GGTTGGGTTTTTTTTTTTGGGGGGGGGGGGGCTGGATTTCAAGACAGGGT  50
      ||||||||||||||||||                  |||| |||||||||
seq2  GGTTGGGTTTTTTTTTTT------------------TTTCGAGACAGGGT  32

seq1  TTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTG  100
      |||||| | |||||||||||||||||| ||||| ||||||| |||| |||
seq2  TTCTCT-TGTAGCCCTGGCTGTCCTGGCACTCA-TTTGTAGCCCAGACTG  80

seq1  ACCTCGAACTCAGAAATCCTCCTGCTTCTGCCTCCCAAGTGCTGGGATTA  150
       ||||||| |||| ||||  | ||| ||||||||||||||||||||||||
seq2  GCCTCGAA-TCAG-AATCTGCTTGCCTCTGCCTCCCAAGTGCTGGGATTA  128

seq1  AAGGTGTGCGCCACCACCGCCC--AGCTAATGAGCTTGTTTTAA--TGAC  196
      ||||| ||||||||||||||||  ||||    ||||||||||||  ||||
seq2  AAGGTATGCGCCACCACCGCCCGGAGCT----AGCTTGTTTTAAATTGAC  174

seq1  AGA  199
      |||
seq2  AGA  177

seq1: chr14_53590142_53591271
seq2: B6Ng01-080K13.g_68_1174

seq1  GAATTCTTTGTCTAGAATTTCTTCCAGGTGATGTGTATGTATGAGATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTCTAGAATTTCTTCCAGGTGATGTGTATGTATGAGATTAG  50

seq1  TAATTTGTGGAACAGATCTATGTCTTGGTTTCACATCTTGTTTCTGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGTGGAACAGATCTATGTCTTGGTTTCACATCTTGTTTCTGTTTC  100

seq1  TGTGTTGGAATTTCACATCTACAGTACATTGTTGGTTATGGTTCTTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGGAATTTCACATCTACAGTACATTGTTGGTTATGGTTCTTCCTT  150

seq1  CTTCTTTTTCTTCCTTTGCTACTTCCCCATCCCATCATCCTTGTTCAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTTCTTCCTTTGCTACTTCCCCATCCCATCATCCTTGTTCAATC  200

seq1  TACCTTTCTTCTTAGCAGAGATATTTCTAATGTACAGGAGAAGACTAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCTTCTTAGCAGAGATATTTCTAATGTACAGGAGAAGACTAAGG  250

seq1  GAGAGTAATTTTCCTACTTGGGGCTGGTACAGAAAGTTCCAGAGAGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAATTTTCCTACTTGGGGCTGGTACAGAAAGTTCCAGAGAGGCAT  300

seq1  ATGTTGTCCTAAGCTGGAGCAGTCAGTAGCCTACTTGTTACCAAGGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTCCTAAGCTGGAGCAGTCAGTAGCCTACTTGTTACCAAGGCTGT  350

seq1  GTGGCCTGGGCTCCTGGAACAAAGTTCCTAGAGGTTTTAGATGGTTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTGGGCTCCTGGAACAAAGTTCCTAGAGGTTTTAGATGGTTCTAG  400

seq1  TACATCAGGTTGGCCAGGAACTGGAGGATAGTTTCCGAATTGTGTACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCAGGTTGGCCAGGAACTGGAGGATAGTTTCCGAATTGTGTACATC  450

seq1  TAAGAGGGGAAGACAAGTCCTTTTCTGGAGGAGGCCCATGGATTGTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGGGAAGACAAGTCCTTTTCTGGAGGAGGCCCATGGATTGTGTTT  500

seq1  GTTTACTAAGTTTCGGGGTGGGGTAGGCATGTCTAAGCATAGGAATCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTAAGTTTCGGGGTGGGGTAGGCATGTCTAAGCATAGGAATCCAG  550

seq1  CTTTCTTACCTTCAATCTCTGTATGCTAGACTTCTGAAGCAAAATTCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTACCTTCAATCTCTGTATGCTAGACTTCTGAAGCAAAATTCAAG  600

seq1  GGGTTCCTGGGAGCTGTAGGTGGGTCTGGTTTATATGCCCATGGGCCGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCTGGGAGCTGTAGGTGGGTCTGGTTTATATGCCCATGGGCCGTC  650

seq1  CTGAAGCTTAGTTCCCCAGGGGTATAAGTGGGTCTCCTCAAAAGAGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCTTAGTTCCCCAGGGGTATAAGTGGGTCTCCTCAAAAGAGAATT  700

seq1  TTCACTCTGCTATTCCAATGAAAGTATTTATAATTATAAATCTTTCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTGCTATTCCAATGAAAGTATTTATAATTATAAATCTTTCTTTT  750

seq1  AAAACTGCAAACTGCTTTAAACATTTTTAGCTAAAACTTATATTGAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGCAAACTGCTTTAAACATTTTTAGCTAAAACTTATATTGAGAGA  800

seq1  GAGAGAAACACAGAGAAAAAAAGAGAACCTATGAAATTTGCAAACATCTT  850
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGAG-AACACAGAG-AAAAAAGAGAACCTATGAAATTTGCAAACATCTT  848

seq1  TGAAAGGTAGCTATGCTCACCATCACATCATCAAAGCCCTATTCATCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGTAGCTATGCTCACCATCACATCATCAAAGCCCTATTCATCTTT  898

seq1  ACAAAGAATATGCTAACTAATAACGAGGAGAGAAATATCAGAATTAAAAG  950
      ||||   ||||||| ||||||||||||||||| |||||||||||| ||||
seq2  ACAA--GATATGCT-ACTAATAACGAGGAGAG-AATATCAGAATT-AAAG  943

seq1  ACACCATGGATCAAATGGGCTTAACAGACATTCACAGAGCACAGAGTACG  1000
      || ||||||||| ||||||||| ||||||| |||||||||| ||||||||
seq2  AC-CCATGGATC-AATGGGCTTTACAGACA-TCACAGAGCA-AGAGTACG  989

seq1  CATTCTTCTCATAGCATGTGGAGGTTTTCTAGAATAGATCATATTGCTGG  1050
      |||||||||| |||||||||||||||||| |||| ||||| |||||||||
seq2  CATTCTTCTC-TAGCATGTGGAGGTTTTC-AGAA-AGATC-TATTGCTGG  1035

seq1  TCATAATATAAGCCTTAACAAGTACAAAAGAGTTAAAATGACTGCTTGTT  1100
       | ||||||||||||  ||| | | ||||    ||||   |||||| |||
seq2  -CCTAATATAAGCCT--ACATGAAAAAAA----TAAATGAACTGCTCGTT  1078

seq1  TCTTATACGATTGTGGTGGGAGAGGATGAG  1130
      |||| ||||| ||||| |||||||||||||
seq2  TCTTTTACGA-TGTGGGGGGAGAGGATGAG  1107